Wall clock time and date at job start Mon Mar 30 2020 01:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35747 * 116.99598 * 2 1 4 4 C 1.39286 * 120.84560 * 359.97438 * 3 2 1 5 5 C 1.37948 * 119.08849 * 180.02562 * 4 3 2 6 6 N 1.31972 * 120.82926 * 359.97438 * 5 4 3 7 7 C 1.31950 * 121.85938 * 359.73235 * 6 5 4 8 8 C 1.37991 * 120.82232 * 0.53910 * 7 6 5 9 9 C 1.50701 * 120.45426 * 179.74919 * 8 7 6 10 10 N 1.46897 * 109.47462 * 254.39364 * 9 8 7 11 11 C 1.46900 * 111.00408 * 199.62005 * 10 9 8 12 12 C 1.50701 * 109.46958 * 170.00506 * 11 10 9 13 13 H 1.07998 * 120.00340 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99779 * 180.02562 * 12 11 10 15 15 N 1.31505 * 120.00068 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99934 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47612 * 89.99705 * 16 14 12 18 18 H 1.48503 * 109.46919 * 210.00228 * 16 14 12 19 19 H 1.48506 * 109.47100 * 329.99802 * 16 14 12 20 20 C 1.46908 * 110.99341 * 75.66562 * 10 9 8 21 21 C 1.52994 * 109.46785 * 68.28718 * 20 10 9 22 22 C 1.53000 * 117.52020 * 116.76195 * 21 20 10 23 23 C 1.52995 * 60.00318 * 107.47453 * 22 21 20 24 24 H 1.08994 * 109.47241 * 59.99875 * 1 2 3 25 25 H 1.09002 * 109.46721 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47008 * 299.99659 * 1 2 3 27 27 H 1.07999 * 120.45342 * 359.97438 * 4 3 2 28 28 H 1.08009 * 119.58696 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.58700 * 180.28912 * 7 6 5 30 30 H 1.09009 * 109.47176 * 134.39759 * 9 8 7 31 31 H 1.09000 * 109.47003 * 14.40148 * 9 8 7 32 32 H 1.09004 * 109.46586 * 290.00324 * 11 10 9 33 33 H 1.08993 * 109.46822 * 50.00128 * 11 10 9 34 34 H 0.97001 * 119.99923 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.47216 * 308.28068 * 20 10 9 36 36 H 1.09000 * 109.46566 * 188.28506 * 20 10 9 37 37 H 1.08998 * 115.55170 * 331.05493 * 21 20 10 38 38 H 1.09003 * 117.49900 * 214.96809 * 22 21 20 39 39 H 1.09000 * 117.49567 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.50091 * 252.51333 * 23 22 21 41 41 H 1.08997 * 117.49886 * 107.49103 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3038 2.3887 -0.0005 5 6 1.9674 3.5981 -0.0011 6 7 3.2863 3.6459 -0.0005 7 6 4.0229 2.5512 0.0057 8 6 3.4345 1.3030 0.0009 9 6 4.2838 0.0582 0.0024 10 7 4.2580 -0.5540 -1.3327 11 6 4.6621 -1.9650 -1.2729 12 6 4.3910 -2.6219 -2.6018 13 1 3.9611 -2.0487 -3.4099 14 6 4.6908 -3.9551 -2.7857 15 7 4.4539 -4.5285 -3.9452 16 14 5.4337 -4.9468 -1.3879 17 1 4.3464 -5.5584 -0.5824 18 1 6.2988 -6.0172 -1.9456 19 1 6.2467 -4.0530 -0.5243 20 6 5.1024 0.1962 -2.2721 21 6 6.5719 0.0333 -1.8786 22 6 7.4972 -0.6673 -2.8756 23 6 7.6069 0.8437 -2.6617 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2243 2.3566 -0.0014 28 1 1.4005 4.5175 -0.0019 29 1 5.0998 2.6331 0.0106 30 1 3.8914 -0.6486 0.7337 31 1 5.3097 0.3186 0.2630 32 1 5.7264 -2.0288 -1.0464 33 1 4.0937 -2.4729 -0.4938 34 1 4.6645 -5.4665 -4.0745 35 1 4.8325 1.2517 -2.2401 36 1 4.9519 -0.1869 -3.2814 37 1 6.7591 -0.1306 -0.8174 38 1 8.2931 -1.2921 -2.4703 39 1 7.0590 -1.0126 -3.8120 40 1 7.2408 1.4925 -3.4573 41 1 8.4749 1.2130 -2.1156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287867241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:49 Heat of formation + Delta-G solvation = 35.509853 kcal Electronic energy + Delta-G solvation = -21950.541812 eV Core-core repulsion = 18832.181955 eV Total energy + Delta-G solvation = -3118.359857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.54304 -38.16285 -37.87800 -35.25230 -32.75439 -31.57871 -31.07066 -27.98725 -27.41158 -26.78229 -24.10898 -22.73028 -21.88631 -21.64316 -21.37641 -19.06606 -18.11659 -16.94898 -16.69506 -15.74857 -15.51037 -15.15904 -14.81831 -14.59911 -14.17288 -14.11787 -14.04951 -13.33628 -13.32768 -12.96328 -12.36932 -12.11900 -11.93710 -11.51006 -11.41492 -11.29072 -11.15334 -11.00121 -10.92497 -10.52358 -10.44140 -9.98062 -9.79929 -9.38353 -9.27393 -9.17246 -9.01695 -8.51806 -8.48388 -7.26994 -5.99719 -3.94880 1.21380 1.53504 3.30694 3.33492 3.38214 3.40301 3.91964 4.32687 4.46452 4.53903 4.76119 4.86854 4.97812 5.12395 5.20546 5.24896 5.28663 5.34858 5.45716 5.49541 5.52327 5.55360 5.63650 5.80726 5.94766 6.00759 6.06795 6.17314 6.22986 6.31028 6.41975 6.47763 6.69892 6.71032 6.85016 6.96929 7.09488 7.40936 7.66717 7.95719 8.10317 8.13456 8.72402 9.09127 9.63080 11.13707 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.006414 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.097309 B = 4364.638378 C = 5571.362971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.285 6.285 3 C 0.191 3.809 4 C -0.269 4.269 5 C 0.124 3.876 6 N -0.513 5.513 7 C 0.131 3.869 8 C -0.148 4.148 9 C 0.098 3.902 10 N -0.512 5.512 11 C 0.163 3.837 12 C -0.495 4.495 13 H 0.078 0.922 14 C 0.069 3.931 15 N -0.903 5.903 16 Si 0.870 3.130 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.268 1.268 20 C 0.097 3.903 21 C -0.175 4.175 22 C -0.161 4.161 23 C -0.190 4.190 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.051 0.949 27 H 0.134 0.866 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.041 0.959 32 H -0.003 1.003 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 12.773 8.726 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.195 6.195 3 C 0.136 3.864 4 C -0.290 4.290 5 C -0.033 4.033 6 N -0.226 5.226 7 C -0.024 4.024 8 C -0.151 4.151 9 C -0.031 4.031 10 N -0.234 5.234 11 C 0.037 3.963 12 C -0.533 4.533 13 H 0.096 0.904 14 C -0.132 4.132 15 N -0.543 5.543 16 Si 0.698 3.302 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.193 1.193 20 C -0.032 4.032 21 C -0.194 4.194 22 C -0.198 4.198 23 C -0.228 4.228 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.014 0.986 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.352 13.150 8.457 15.991 hybrid contribution 0.485 -1.489 0.961 1.838 sum -2.867 11.661 9.419 15.262 Atomic orbital electron populations 1.23102 0.78614 1.04330 1.00846 1.86276 1.20933 1.25547 1.86704 1.19173 0.91966 0.84608 0.90642 1.22175 1.01268 0.93369 1.12211 1.22413 0.90384 0.96690 0.93817 1.67687 1.07030 1.32109 1.15759 1.22517 0.99977 0.86340 0.93580 1.20395 0.91528 0.97333 1.05845 1.20818 0.95937 0.92619 0.93715 1.62161 1.52321 1.03734 1.05135 1.20200 0.93761 0.83845 0.98490 1.20944 1.40568 0.94864 0.96954 0.90421 1.24834 0.95555 0.97534 0.95241 1.69887 1.49171 1.12108 1.23160 0.86941 0.79737 0.80318 0.83238 1.20371 1.21403 1.19251 1.21695 0.86461 0.96705 0.98304 1.22944 0.94646 1.04695 0.97148 1.22886 1.01876 0.93227 1.01763 1.22900 1.01196 0.94998 1.03673 0.92544 0.87916 0.93071 0.84778 0.83107 0.82671 0.90432 0.94126 0.98561 0.96182 0.92856 0.92582 0.89701 0.88856 0.89888 0.88062 0.89283 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.84 101.05 0.99 1.29 16 2 O -0.29 -4.57 9.96 -18.95 -0.19 -4.76 16 3 C 0.19 2.93 6.70 -38.82 -0.26 2.67 16 4 C -0.27 -3.39 9.11 -39.30 -0.36 -3.75 16 5 C 0.12 1.54 11.17 -17.60 -0.20 1.35 16 6 N -0.51 -7.41 10.36 -13.33 -0.14 -7.54 16 7 C 0.13 1.90 10.24 -17.59 -0.18 1.72 16 8 C -0.15 -2.33 4.83 -104.34 -0.50 -2.83 16 9 C 0.10 1.69 4.67 -4.98 -0.02 1.66 16 10 N -0.51 -10.51 4.62 -237.51 -1.10 -11.61 16 11 C 0.16 3.87 3.54 -4.98 -0.02 3.85 16 12 C -0.49 -13.76 9.13 -34.44 -0.31 -14.08 16 13 H 0.08 2.38 7.34 -52.49 -0.39 1.99 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 16 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 20 C 0.10 1.84 5.29 -3.82 -0.02 1.82 16 21 C -0.17 -3.02 3.88 -90.62 -0.35 -3.37 16 22 C -0.16 -2.83 10.18 -26.73 -0.27 -3.10 16 23 C -0.19 -2.82 10.25 -26.73 -0.27 -3.09 16 24 H 0.06 0.57 7.71 -51.93 -0.40 0.17 16 25 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.45 7.71 -51.93 -0.40 0.05 16 27 H 0.13 1.31 6.47 -52.49 -0.34 0.97 16 28 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.16 1.97 8.00 -52.49 -0.42 1.55 16 30 H 0.08 1.37 7.67 -51.92 -0.40 0.98 16 31 H 0.04 0.64 6.01 -51.93 -0.31 0.33 16 32 H 0.00 -0.08 5.64 -51.93 -0.29 -0.37 16 33 H 0.02 0.49 7.26 -51.93 -0.38 0.12 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.06 0.99 6.98 -51.93 -0.36 0.63 16 36 H 0.08 1.84 6.72 -51.93 -0.35 1.49 16 37 H 0.09 1.61 6.33 -51.93 -0.33 1.28 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.10 1.97 8.03 -51.93 -0.42 1.55 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -31.64 332.22 -8.25 -39.89 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.06 Total: 2.88 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.88 Total: -13.98 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.46 Total: -45.86 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.19 Total: -4.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.64 -8.25 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287867241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.399 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds