Wall clock time and date at job start Mon Mar 30 2020 02:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00189 * 2 1 4 4 N 1.46506 * 109.47217 * 124.99835 * 3 2 1 5 5 C 1.36729 * 127.13841 * 270.02225 * 4 3 2 6 6 C 1.50700 * 126.35084 * 359.96497 * 5 4 3 7 7 C 1.52996 * 117.49943 * 188.74778 * 6 5 4 8 8 C 1.52995 * 117.50153 * 120.08404 * 6 5 4 9 9 N 1.30299 * 107.30407 * 179.97438 * 5 4 3 10 10 N 1.28521 * 110.05616 * 359.97438 * 9 5 4 11 11 C 1.31224 * 109.85862 * 0.02562 * 10 9 5 12 12 N 1.38580 * 126.46974 * 180.02562 * 11 10 9 13 13 C 1.46908 * 110.99746 * 123.92995 * 12 11 10 14 14 C 1.46897 * 111.00389 * 359.97438 * 12 11 10 15 15 H 1.08998 * 109.47002 * 309.99980 * 14 12 11 16 16 C 1.52999 * 109.46992 * 69.99802 * 14 12 11 17 17 C 1.50700 * 109.46981 * 189.99709 * 14 12 11 18 18 H 1.07997 * 120.00145 * 359.97438 * 17 14 12 19 19 C 1.37880 * 119.99400 * 179.97438 * 17 14 12 20 20 N 1.31506 * 120.00463 * 0.02562 * 19 17 14 21 21 Si 1.86807 * 119.99424 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47390 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46891 * 120.00332 * 21 19 17 24 24 H 1.48508 * 109.46995 * 239.99622 * 21 19 17 25 25 H 1.08003 * 119.99979 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99755 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.00060 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47245 * 5.00362 * 3 2 1 29 29 H 1.08999 * 109.47630 * 245.00142 * 3 2 1 30 30 H 1.09004 * 115.54620 * 334.41311 * 6 5 4 31 31 H 1.08997 * 117.50288 * 359.97438 * 7 6 5 32 32 H 1.09004 * 117.49796 * 145.02007 * 7 6 5 33 33 H 1.09001 * 117.49641 * 214.98128 * 8 6 5 34 34 H 1.08996 * 117.50233 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46715 * 59.99413 * 13 12 11 36 36 H 1.09001 * 109.47232 * 179.97438 * 13 12 11 37 37 H 1.08993 * 109.47068 * 300.00375 * 13 12 11 38 38 H 1.09005 * 109.47459 * 60.00178 * 16 14 12 39 39 H 1.09009 * 109.47089 * 180.02562 * 16 14 12 40 40 H 1.09000 * 109.47491 * 299.99856 * 16 14 12 41 41 H 0.97002 * 120.00194 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.7446 1.7931 2.3943 6 6 1.4477 2.3772 2.8922 7 6 1.4489 3.0184 4.2813 8 6 0.7571 1.6709 4.0605 9 7 3.8364 1.6340 3.0875 10 7 4.7512 1.1073 2.3543 11 6 4.2884 0.9009 1.1438 12 7 4.9831 0.3485 0.0795 13 6 4.2783 -0.8231 -0.4579 14 6 6.3567 0.0036 0.4694 15 1 6.8202 0.8586 0.9616 16 6 6.3303 -1.1860 1.4312 17 6 7.1509 -0.3606 -0.7584 18 1 6.6821 -0.3385 -1.7310 19 6 8.4762 -0.7221 -0.6398 20 7 9.0470 -0.7495 0.5446 21 14 9.4606 -1.1743 -2.1617 22 1 8.5934 -1.0666 -3.3623 23 1 10.6136 -0.2485 -2.2986 24 1 9.9574 -2.5680 -2.0339 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 0.8121 2.8284 2.1302 31 1 2.3876 3.0174 4.8353 32 1 0.8138 3.8911 4.4334 33 1 -0.3328 1.6576 4.0673 34 1 1.2405 0.7834 4.4688 35 1 3.2885 -0.5248 -0.8034 36 1 4.8448 -1.2368 -1.2922 37 1 4.1785 -1.5768 0.3232 38 1 5.8668 -2.0410 0.9391 39 1 7.3496 -1.4417 1.7210 40 1 5.7558 -0.9226 2.3193 41 1 9.9795 -1.0034 0.6279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289887310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:08 Heat of formation + Delta-G solvation = 151.621663 kcal Electronic energy + Delta-G solvation = -22136.597075 eV Core-core repulsion = 19055.564955 eV Total energy + Delta-G solvation = -3081.032120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.48578 -37.64116 -36.82984 -36.07513 -32.90636 -32.47398 -29.41851 -28.60575 -26.96992 -25.34546 -25.18148 -23.57407 -22.43302 -21.71399 -20.68920 -19.62183 -19.09300 -17.24754 -16.29630 -15.97646 -15.46849 -15.43865 -14.95363 -14.50611 -14.40732 -14.02635 -13.55458 -13.10386 -12.80546 -12.50338 -12.04588 -11.75803 -11.59619 -11.50320 -11.29569 -11.02790 -10.92744 -10.88548 -10.70266 -10.59025 -10.55513 -10.19488 -10.07119 -9.81776 -9.73291 -9.66204 -8.96592 -8.83891 -8.39878 -7.29436 -6.03069 -4.10053 1.80278 2.22896 2.82474 3.28545 3.35995 3.36489 3.39525 3.93660 4.33435 4.42705 4.52379 4.60177 4.68781 4.80345 4.85339 4.98755 5.07322 5.28402 5.32090 5.56646 5.57210 5.59570 5.68400 5.83598 5.97507 6.01858 6.14001 6.20260 6.25395 6.37065 6.43258 6.50227 6.81429 7.00754 7.05727 7.16203 7.48628 7.63950 7.76152 7.99643 8.26520 8.45050 8.92206 9.42287 9.54667 11.03506 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025890 B = 0.005019 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.240758 B = 5577.179723 C = 6310.364110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.179 4.179 3 C 0.140 3.860 4 N -0.485 5.485 5 C 0.179 3.821 6 C -0.072 4.072 7 C -0.152 4.152 8 C -0.161 4.161 9 N -0.284 5.284 10 N -0.317 5.317 11 C 0.386 3.614 12 N -0.449 5.449 13 C 0.021 3.979 14 C 0.227 3.773 15 H 0.057 0.943 16 C -0.168 4.168 17 C -0.512 4.512 18 H 0.064 0.936 19 C 0.063 3.937 20 N -0.884 5.884 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.034 0.966 38 H 0.023 0.977 39 H 0.092 0.908 40 H 0.029 0.971 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.245 3.100 0.357 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.198 4.198 3 C 0.017 3.983 4 N -0.182 5.182 5 C -0.088 4.088 6 C -0.093 4.093 7 C -0.190 4.190 8 C -0.199 4.199 9 N -0.123 5.123 10 N -0.161 5.161 11 C 0.031 3.969 12 N -0.172 5.172 13 C -0.126 4.126 14 C 0.123 3.877 15 H 0.075 0.925 16 C -0.227 4.227 17 C -0.551 4.551 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.211 1.211 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.139 0.861 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.110 0.890 40 H 0.048 0.952 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.994 3.426 1.187 18.355 hybrid contribution -0.266 -0.845 -1.568 1.800 sum -18.260 2.581 -0.381 18.445 Atomic orbital electron populations 1.23881 0.95406 1.02272 0.98806 1.23399 0.96413 0.98657 1.01312 1.20870 0.91829 0.96575 0.89050 1.46061 1.11262 1.49686 1.11158 1.23350 0.97659 1.05664 0.82162 1.19873 0.92080 1.04887 0.92479 1.23007 1.03424 0.96060 0.96519 1.23035 0.99235 0.97198 1.00478 1.73878 0.96894 1.15499 1.26009 1.74859 1.22297 1.20509 0.98471 1.23317 0.81653 0.99448 0.92496 1.59286 1.05405 1.28884 1.23633 1.22720 0.98015 0.91109 1.00796 1.19404 0.78168 0.95176 0.94951 0.92519 1.22355 1.03887 0.98435 0.98036 1.21050 0.95211 1.46181 0.92661 0.91809 1.24896 0.97490 0.95420 0.96126 1.69926 1.12486 1.47755 1.22073 0.86426 0.80032 0.77960 0.82869 1.19756 1.20944 1.21060 0.87808 0.88289 0.86050 0.88874 0.87488 0.86741 0.87213 0.88254 0.88329 0.88339 0.92266 0.88863 0.94729 0.95765 0.88974 0.95228 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 14.32 29.02 0.42 -0.95 16 2 C -0.18 -1.94 8.68 -36.03 -0.31 -2.25 16 3 C 0.14 1.71 5.58 -5.19 -0.03 1.68 16 4 N -0.48 -8.23 2.79 -115.36 -0.32 -8.55 16 5 C 0.18 3.04 7.59 -154.02 -1.17 1.87 16 6 C -0.07 -0.87 5.99 -91.78 -0.55 -1.42 16 7 C -0.15 -1.62 10.15 -26.69 -0.27 -1.90 16 8 C -0.16 -1.66 10.24 -26.70 -0.27 -1.93 16 9 N -0.28 -5.98 11.79 32.99 0.39 -5.59 16 10 N -0.32 -7.54 9.63 30.32 0.29 -7.25 16 11 C 0.39 8.26 6.76 -318.87 -2.16 6.11 16 12 N -0.45 -9.92 4.76 -176.08 -0.84 -10.76 16 13 C 0.02 0.38 7.87 60.07 0.47 0.86 16 14 C 0.23 5.91 2.00 -68.87 -0.14 5.77 16 15 H 0.06 1.70 7.75 -51.93 -0.40 1.29 16 16 C -0.17 -4.30 8.18 37.16 0.30 -4.00 16 17 C -0.51 -13.86 7.91 -34.44 -0.27 -14.13 16 18 H 0.06 1.68 7.12 -52.49 -0.37 1.31 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.88 -25.44 11.32 55.43 0.63 -24.81 16 21 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.10 0.75 8.06 -52.48 -0.42 0.32 16 26 H 0.10 0.65 7.84 -52.49 -0.41 0.24 16 27 H 0.12 1.47 6.16 -52.48 -0.32 1.15 16 28 H 0.09 0.88 7.09 -51.93 -0.37 0.51 16 29 H 0.11 1.34 7.57 -51.93 -0.39 0.94 16 30 H 0.11 1.08 7.54 -51.93 -0.39 0.69 16 31 H 0.11 1.39 7.92 -51.93 -0.41 0.98 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 0.88 3.47 -51.93 -0.18 0.70 16 36 H 0.09 1.77 6.76 -51.93 -0.35 1.42 16 37 H 0.03 0.65 6.46 -51.93 -0.34 0.32 16 38 H 0.02 0.57 6.42 -51.93 -0.33 0.24 16 39 H 0.09 2.58 6.07 -51.92 -0.32 2.27 16 40 H 0.03 0.75 6.34 -51.93 -0.33 0.42 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -32.10 327.02 -9.76 -41.86 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.75 Total: 2.80 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -4.07 Total: -8.65 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.15 Total: -56.96 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.10 -9.76 -41.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289887310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.483 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds