Wall clock time and date at job start Mon Mar 30 2020 01:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35908 * 117.00093 * 2 1 4 4 C 1.38753 * 120.47100 * 0.02562 * 3 2 1 5 5 N 1.31812 * 120.68204 * 179.97438 * 4 3 2 6 6 C 1.31875 * 121.77865 * 359.70601 * 5 4 3 7 7 C 1.38212 * 120.88792 * 0.58400 * 6 5 4 8 8 C 1.50706 * 120.38924 * 179.70197 * 7 6 5 9 9 N 1.46496 * 109.46847 * 264.36413 * 8 7 6 10 10 C 1.36939 * 119.99711 * 264.61850 * 9 8 7 11 11 H 1.07997 * 119.99582 * 145.99141 * 10 9 8 12 12 C 1.38806 * 120.00152 * 325.98501 * 10 9 8 13 13 N 1.31613 * 120.00331 * 337.20622 * 12 10 9 14 14 Si 1.86803 * 120.00006 * 157.19985 * 12 10 9 15 15 H 1.48503 * 109.47152 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47234 * 120.00210 * 14 12 10 17 17 H 1.48493 * 109.47300 * 240.00630 * 14 12 10 18 18 C 1.46500 * 120.00156 * 84.62321 * 9 8 7 19 19 C 1.54265 * 110.03327 * 122.08870 * 18 9 8 20 20 C 1.54960 * 104.16137 * 95.75391 * 19 18 9 21 21 C 1.54887 * 102.77905 * 37.88814 * 20 19 18 22 22 C 1.53873 * 110.03075 * 239.30324 * 18 9 8 23 23 C 1.38577 * 119.22403 * 359.43049 * 7 6 5 24 24 H 1.09000 * 109.47091 * 60.00163 * 1 2 3 25 25 H 1.09007 * 109.46680 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46995 * 299.99483 * 1 2 3 27 27 H 1.07999 * 119.65913 * 359.95662 * 4 3 2 28 28 H 1.08003 * 119.55895 * 180.31328 * 6 5 4 29 29 H 1.08998 * 109.47019 * 144.36208 * 8 7 6 30 30 H 1.09003 * 109.46779 * 24.36466 * 8 7 6 31 31 H 0.97005 * 120.00169 * 180.02562 * 13 12 10 32 32 H 1.08995 * 110.01431 * 0.69796 * 18 9 8 33 33 H 1.09003 * 110.48948 * 214.40016 * 19 18 9 34 34 H 1.09006 * 110.48616 * 337.04713 * 19 18 9 35 35 H 1.09001 * 110.72224 * 279.57372 * 20 19 18 36 36 H 1.09003 * 110.92578 * 156.29518 * 20 19 18 37 37 H 1.08998 * 110.49070 * 203.40801 * 21 20 19 38 38 H 1.09004 * 110.60116 * 80.81629 * 21 20 19 39 39 H 1.08997 * 110.03529 * 359.95785 * 22 18 9 40 40 H 1.09009 * 110.02873 * 121.33569 * 22 18 9 41 41 H 1.07994 * 120.81336 * 180.25392 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.3000 2.3808 0.0005 5 7 1.8941 3.5574 0.0010 6 6 3.2078 3.6721 0.0068 7 6 4.0179 2.5523 0.0005 8 6 5.5180 2.6964 0.0005 9 7 6.0163 2.6153 -1.3748 10 6 6.4656 1.4206 -1.8708 11 1 6.3178 1.1789 -2.9129 12 6 7.1112 0.5206 -1.0343 13 7 7.6891 0.9457 0.0691 14 14 7.1596 -1.2942 -1.4744 15 1 6.4420 -1.5120 -2.7562 16 1 8.5715 -1.7314 -1.6177 17 1 6.5041 -2.0819 -0.3997 18 6 6.0339 3.8123 -2.2193 19 6 7.4700 4.0936 -2.7074 20 6 7.5297 3.4358 -4.1091 21 6 6.1236 3.7325 -4.6870 22 6 5.1781 3.5823 -3.4773 23 6 3.4345 1.2953 0.0000 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.2214 2.3268 0.0002 28 1 3.6569 4.6544 0.0122 29 1 5.9599 1.8967 0.5948 30 1 5.7903 3.6608 0.4293 31 1 8.1406 0.3167 0.6536 32 1 5.6548 4.6683 -1.6611 33 1 7.6441 5.1670 -2.7822 34 1 8.1973 3.6339 -2.0381 35 1 7.6937 2.3615 -4.0244 36 1 8.3044 3.8961 -4.7225 37 1 5.8693 3.0095 -5.4620 38 1 6.0780 4.7469 -5.0832 39 1 4.7504 2.5799 -3.4599 40 1 4.3832 4.3264 -3.5292 41 1 4.0429 0.4030 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290350053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:45 Heat of formation + Delta-G solvation = 10.271550 kcal Electronic energy + Delta-G solvation = -22246.360196 eV Core-core repulsion = 19126.905924 eV Total energy + Delta-G solvation = -3119.454272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.12673 -38.07804 -37.48067 -34.49974 -32.07642 -30.96714 -29.93103 -27.80125 -27.44687 -26.80787 -25.73121 -22.97297 -22.72693 -20.86979 -19.82097 -19.02632 -17.50755 -16.52946 -16.30161 -16.11306 -15.60662 -15.31606 -14.68666 -14.27568 -13.89500 -13.48047 -13.39180 -13.02545 -12.80960 -12.56917 -12.42252 -11.78725 -11.66406 -11.32731 -11.26928 -11.12546 -10.77726 -10.74065 -10.38943 -10.33148 -10.25943 -10.17324 -9.98249 -9.72074 -9.59193 -8.92891 -8.75620 -8.50187 -7.96482 -6.69163 -5.88426 -3.36716 1.69724 1.89032 3.31847 3.42328 3.44916 3.46913 4.31109 4.46323 4.91048 5.02779 5.18377 5.22394 5.27506 5.36840 5.45291 5.47363 5.50379 5.57741 5.75702 5.80130 5.94751 6.17596 6.19292 6.31500 6.36644 6.47904 6.48394 6.58635 6.60470 6.66446 6.70163 6.84824 7.04951 7.05941 7.14981 7.17584 7.31855 7.53922 7.61461 7.80312 8.44033 8.46071 9.10590 9.74758 10.30364 11.13422 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.007538 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.648084 B = 3713.684707 C = 4772.444336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.069 3.931 4 C -0.012 4.012 5 N -0.459 5.459 6 C 0.054 3.946 7 C -0.081 4.081 8 C 0.175 3.825 9 N -0.566 5.566 10 C -0.242 4.242 11 H 0.066 0.934 12 C 0.010 3.990 13 N -0.883 5.883 14 Si 0.887 3.113 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.287 1.287 18 C 0.171 3.829 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.134 4.134 23 C -0.091 4.091 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.112 0.888 30 H 0.039 0.961 31 H 0.255 0.745 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 2.639 -1.414 9.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.022 3.978 4 C -0.170 4.170 5 N -0.168 5.168 6 C -0.105 4.105 7 C -0.086 4.086 8 C 0.048 3.952 9 N -0.284 5.284 10 C -0.371 4.371 11 H 0.083 0.917 12 C -0.190 4.190 13 N -0.525 5.525 14 Si 0.716 3.284 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.213 1.213 18 C 0.064 3.936 19 C -0.166 4.166 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.173 4.173 23 C -0.118 4.118 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.130 0.870 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.834 3.093 -1.302 9.450 hybrid contribution 0.142 -1.701 -0.297 1.733 sum -8.692 1.391 -1.600 8.947 Atomic orbital electron populations 1.22995 0.79066 1.03562 1.01124 1.86085 1.20788 1.26879 1.89051 1.20158 0.93444 0.85120 0.99060 1.22526 0.99552 0.87578 1.07322 1.67380 1.12637 1.26398 1.10425 1.22475 0.88384 0.98702 1.00969 1.22206 1.01530 0.91731 0.93125 1.20072 0.84038 1.02243 0.88857 1.43897 1.69326 1.05127 1.10015 1.19014 1.29775 0.92783 0.95535 0.91671 1.25030 0.96875 0.98870 0.98243 1.69991 1.34529 1.33326 1.14690 0.86473 0.77452 0.86196 0.78287 1.20073 1.21672 1.21301 1.21045 0.92814 0.88917 0.90852 1.22702 0.99580 0.97490 0.96797 1.22439 0.95120 1.01816 0.96019 1.22273 0.96525 0.99476 0.97450 1.22634 0.97591 1.01488 0.95629 1.20884 0.90506 0.99422 1.00998 0.92845 0.88550 0.92874 0.83817 0.83608 0.87024 0.94216 0.93481 0.93252 0.93924 0.90376 0.90543 0.93731 0.93122 0.93150 0.91170 0.93827 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.82 101.05 0.99 1.30 16 2 O -0.32 -5.20 10.51 -19.45 -0.20 -5.40 16 3 C 0.07 1.25 6.71 -39.07 -0.26 0.99 16 4 C -0.01 -0.20 10.22 -17.37 -0.18 -0.38 16 5 N -0.46 -8.42 10.36 -13.12 -0.14 -8.55 16 6 C 0.05 0.99 10.83 -17.54 -0.19 0.80 16 7 C -0.08 -1.61 5.47 -104.50 -0.57 -2.18 16 8 C 0.17 3.80 5.35 -5.19 -0.03 3.77 16 9 N -0.57 -12.72 2.32 -165.76 -0.38 -13.11 16 10 C -0.24 -5.99 7.39 -15.06 -0.11 -6.10 16 11 H 0.07 1.67 6.47 -52.49 -0.34 1.33 16 12 C 0.01 0.25 4.90 -17.44 -0.09 0.16 16 13 N -0.88 -23.50 11.38 55.49 0.63 -22.87 16 14 Si 0.89 20.72 29.61 -169.99 -5.03 15.69 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.17 3.39 3.48 -66.81 -0.23 3.15 16 19 C -0.13 -2.42 6.10 -25.03 -0.15 -2.57 16 20 C -0.12 -2.09 6.52 -24.70 -0.16 -2.25 16 21 C -0.12 -1.99 6.83 -25.07 -0.17 -2.17 16 22 C -0.13 -2.49 6.15 -25.61 -0.16 -2.65 16 23 C -0.09 -1.84 9.83 -39.14 -0.38 -2.22 16 24 H 0.05 0.53 7.68 -51.93 -0.40 0.14 16 25 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 27 H 0.14 1.97 6.32 -52.49 -0.33 1.64 16 28 H 0.15 2.42 8.06 -52.48 -0.42 1.99 16 29 H 0.11 2.75 5.36 -51.93 -0.28 2.47 16 30 H 0.04 0.82 7.96 -51.93 -0.41 0.40 16 31 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.05 0.93 7.89 -51.93 -0.41 0.52 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.73 7.97 -51.93 -0.41 1.32 16 35 H 0.08 1.54 6.78 -51.93 -0.35 1.19 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.48 7.04 -51.93 -0.37 1.11 16 40 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.14 3.00 8.06 -52.49 -0.42 2.57 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -27.30 329.54 -8.07 -35.37 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.22 Total: 4.25 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.69 Total: -10.34 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.11 Total: -44.53 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.20 Total: -5.40 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.30 -8.07 -35.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290350053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.645 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds