Wall clock time and date at job start Mon Mar 30 2020 01:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35908 * 117.00093 * 2 1 4 4 C 1.38753 * 120.47100 * 0.02562 * 3 2 1 5 5 N 1.31812 * 120.68204 * 179.97438 * 4 3 2 6 6 C 1.31875 * 121.77865 * 359.70601 * 5 4 3 7 7 C 1.38212 * 120.88792 * 0.58400 * 6 5 4 8 8 C 1.50706 * 120.38924 * 179.70197 * 7 6 5 9 9 N 1.46496 * 109.46847 * 264.36413 * 8 7 6 10 10 C 1.36939 * 119.99711 * 264.61850 * 9 8 7 11 11 H 1.07997 * 119.99582 * 145.99141 * 10 9 8 12 12 C 1.38806 * 120.00152 * 325.98501 * 10 9 8 13 13 N 1.31613 * 120.00331 * 337.20622 * 12 10 9 14 14 Si 1.86803 * 120.00006 * 157.19985 * 12 10 9 15 15 H 1.48503 * 109.47152 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47234 * 120.00210 * 14 12 10 17 17 H 1.48493 * 109.47300 * 240.00630 * 14 12 10 18 18 C 1.46500 * 120.00156 * 84.62321 * 9 8 7 19 19 C 1.54265 * 110.03327 * 122.08870 * 18 9 8 20 20 C 1.54960 * 104.16137 * 95.75391 * 19 18 9 21 21 C 1.54887 * 102.77905 * 37.88814 * 20 19 18 22 22 C 1.53873 * 110.03075 * 239.30324 * 18 9 8 23 23 C 1.38577 * 119.22403 * 359.43049 * 7 6 5 24 24 H 1.09000 * 109.47091 * 60.00163 * 1 2 3 25 25 H 1.09007 * 109.46680 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46995 * 299.99483 * 1 2 3 27 27 H 1.07999 * 119.65913 * 359.95662 * 4 3 2 28 28 H 1.08003 * 119.55895 * 180.31328 * 6 5 4 29 29 H 1.08998 * 109.47019 * 144.36208 * 8 7 6 30 30 H 1.09003 * 109.46779 * 24.36466 * 8 7 6 31 31 H 0.97005 * 120.00169 * 180.02562 * 13 12 10 32 32 H 1.08995 * 110.01431 * 0.69796 * 18 9 8 33 33 H 1.09003 * 110.48948 * 214.40016 * 19 18 9 34 34 H 1.09006 * 110.48616 * 337.04713 * 19 18 9 35 35 H 1.09001 * 110.72224 * 279.57372 * 20 19 18 36 36 H 1.09003 * 110.92578 * 156.29518 * 20 19 18 37 37 H 1.08998 * 110.49070 * 203.40801 * 21 20 19 38 38 H 1.09004 * 110.60116 * 80.81629 * 21 20 19 39 39 H 1.08997 * 110.03529 * 359.95785 * 22 18 9 40 40 H 1.09009 * 110.02873 * 121.33569 * 22 18 9 41 41 H 1.07994 * 120.81336 * 180.25392 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.3000 2.3808 0.0005 5 7 1.8941 3.5574 0.0010 6 6 3.2078 3.6721 0.0068 7 6 4.0179 2.5523 0.0005 8 6 5.5180 2.6964 0.0005 9 7 6.0163 2.6153 -1.3748 10 6 6.4656 1.4206 -1.8708 11 1 6.3178 1.1789 -2.9129 12 6 7.1112 0.5206 -1.0343 13 7 7.6891 0.9457 0.0691 14 14 7.1596 -1.2942 -1.4744 15 1 6.4420 -1.5120 -2.7562 16 1 8.5715 -1.7314 -1.6177 17 1 6.5041 -2.0819 -0.3997 18 6 6.0339 3.8123 -2.2193 19 6 7.4700 4.0936 -2.7074 20 6 7.5297 3.4358 -4.1091 21 6 6.1236 3.7325 -4.6870 22 6 5.1781 3.5823 -3.4773 23 6 3.4345 1.2953 0.0000 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.2214 2.3268 0.0002 28 1 3.6569 4.6544 0.0122 29 1 5.9599 1.8967 0.5948 30 1 5.7903 3.6608 0.4293 31 1 8.1406 0.3167 0.6536 32 1 5.6548 4.6683 -1.6611 33 1 7.6441 5.1670 -2.7822 34 1 8.1973 3.6339 -2.0381 35 1 7.6937 2.3615 -4.0244 36 1 8.3044 3.8961 -4.7225 37 1 5.8693 3.0095 -5.4620 38 1 6.0780 4.7469 -5.0832 39 1 4.7504 2.5799 -3.4599 40 1 4.3832 4.3264 -3.5292 41 1 4.0429 0.4030 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290350053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:44 Heat of formation + Delta-G solvation = -4.113895 kcal Electronic energy + Delta-G solvation = -22246.983995 eV Core-core repulsion = 19126.905924 eV Total energy + Delta-G solvation = -3120.078071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51951 -39.56185 -38.87238 -36.15424 -33.77909 -32.59372 -31.40476 -29.28792 -28.65830 -28.27931 -27.38875 -24.56409 -24.27703 -22.37526 -21.24743 -20.69095 -18.89332 -18.09552 -17.83532 -17.52854 -16.98008 -16.76271 -16.39381 -15.95259 -15.14547 -15.04575 -14.91383 -14.63290 -14.22992 -14.02991 -13.94998 -13.22029 -13.20331 -12.90581 -12.76137 -12.60146 -12.38408 -12.35045 -12.16030 -11.91352 -11.79093 -11.69138 -11.60593 -11.31855 -11.12271 -10.51272 -10.39306 -10.23362 -9.33343 -8.54964 -7.81888 -5.32100 0.26296 0.38979 1.40210 1.46996 1.53068 2.30587 2.50842 2.88063 3.28235 3.62004 3.72495 3.77548 3.99611 4.02735 4.09841 4.22289 4.33506 4.37189 4.39342 4.43240 4.67116 4.72636 4.74760 4.81684 4.93629 4.97465 4.99283 5.06154 5.07119 5.21235 5.27495 5.33671 5.49108 5.58420 5.60854 5.66615 5.71647 5.75611 5.87866 6.33205 6.52447 7.02188 7.20132 7.91607 8.41554 9.16828 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.007538 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.648084 B = 3713.684707 C = 4772.444336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.073 3.927 4 C 0.000 4.000 5 N -0.463 5.463 6 C 0.055 3.945 7 C -0.087 4.087 8 C 0.180 3.820 9 N -0.576 5.576 10 C -0.228 4.228 11 H 0.054 0.946 12 C -0.031 4.031 13 N -0.910 5.910 14 Si 0.930 3.070 15 H -0.275 1.275 16 H -0.293 1.293 17 H -0.293 1.293 18 C 0.162 3.838 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.127 4.127 23 C -0.115 4.115 24 H 0.067 0.933 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.183 0.817 28 H 0.165 0.835 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.249 0.751 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.817 4.044 -2.479 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.249 6.249 3 C 0.026 3.974 4 C -0.158 4.158 5 N -0.172 5.172 6 C -0.104 4.104 7 C -0.092 4.092 8 C 0.054 3.946 9 N -0.295 5.295 10 C -0.359 4.359 11 H 0.072 0.928 12 C -0.228 4.228 13 N -0.555 5.555 14 Si 0.760 3.240 15 H -0.200 1.200 16 H -0.220 1.220 17 H -0.220 1.220 18 C 0.056 3.944 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.148 4.148 22 C -0.166 4.166 23 C -0.143 4.143 24 H 0.086 0.914 25 H 0.139 0.861 26 H 0.089 0.911 27 H 0.200 0.800 28 H 0.182 0.818 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.142 4.504 -2.382 12.252 hybrid contribution 0.692 -2.144 0.048 2.253 sum -10.451 2.360 -2.334 10.965 Atomic orbital electron populations 1.23419 0.75959 1.05865 1.02633 1.86073 1.23974 1.26149 1.88673 1.20117 0.92654 0.86406 0.98246 1.23089 1.01181 0.86502 1.05074 1.67486 1.12259 1.26937 1.10488 1.22637 0.88472 0.98779 1.00467 1.21923 1.00413 0.92381 0.94490 1.19842 0.85338 1.01287 0.88171 1.44018 1.69711 1.05407 1.10347 1.18993 1.28313 0.93645 0.94903 0.92803 1.25441 0.97645 1.01048 0.98678 1.70081 1.36197 1.33590 1.15598 0.85781 0.76889 0.83657 0.77674 1.19950 1.22032 1.21969 1.21268 0.93647 0.88253 0.91229 1.22625 0.97967 0.98937 0.96591 1.22381 0.97004 0.99926 0.95905 1.22240 0.94624 1.01328 0.96625 1.22521 0.98109 1.00162 0.95842 1.20807 0.91929 0.98675 1.02879 0.91428 0.86124 0.91072 0.80016 0.81763 0.90189 0.93478 0.94113 0.91933 0.91118 0.94237 0.93691 0.91302 0.92610 0.90246 0.94221 0.92070 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.82 113.37 1.11 1.40 16 2 O -0.34 -10.56 10.51 -92.52 -0.97 -11.53 16 3 C 0.07 2.57 6.71 22.60 0.15 2.72 16 4 C 0.00 -0.01 10.22 84.82 0.87 0.86 16 5 N -0.46 -15.75 10.36 -195.44 -2.02 -17.77 16 6 C 0.05 1.93 10.83 84.68 0.92 2.85 16 7 C -0.09 -3.50 5.47 -19.79 -0.11 -3.61 16 8 C 0.18 8.07 5.35 85.64 0.46 8.53 16 9 N -0.58 -26.49 2.32 -678.33 -1.57 -28.06 16 10 C -0.23 -11.70 7.39 84.03 0.62 -11.08 16 11 H 0.05 2.86 6.47 -2.91 -0.02 2.84 16 12 C -0.03 -1.66 4.90 84.86 0.42 -1.25 16 13 N -0.91 -50.74 11.38 21.65 0.25 -50.50 16 14 Si 0.93 44.29 29.61 68.60 2.03 46.32 16 15 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 16 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 17 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 18 C 0.16 6.31 3.48 45.72 0.16 6.47 16 19 C -0.12 -4.56 6.10 31.69 0.19 -4.37 16 20 C -0.11 -3.97 6.52 31.91 0.21 -3.76 16 21 C -0.11 -3.41 6.83 31.67 0.22 -3.20 16 22 C -0.13 -4.53 6.15 31.32 0.19 -4.33 16 23 C -0.12 -4.78 9.83 22.56 0.22 -4.56 16 24 H 0.07 1.09 7.68 -2.39 -0.02 1.08 16 25 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 27 H 0.18 4.15 6.32 -2.91 -0.02 4.14 16 28 H 0.17 5.10 8.06 -2.91 -0.02 5.07 16 29 H 0.08 4.16 5.36 -2.39 -0.01 4.14 16 30 H 0.05 1.97 7.96 -2.39 -0.02 1.95 16 31 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 32 H 0.06 2.24 7.89 -2.39 -0.02 2.22 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.04 1.78 7.97 -2.38 -0.02 1.76 16 35 H 0.04 1.83 6.78 -2.39 -0.02 1.81 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.65 7.04 -2.39 -0.02 1.63 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -60.88 329.54 4.35 -56.53 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 1.01 Total: 18.35 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 5.63 Total: -13.34 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -3.35 Total: -96.33 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.97 Total: -11.53 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -60.88 4.35 -56.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290350053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.417 kcal (2) G-P(sol) polarization free energy of solvation -60.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds