Wall clock time and date at job start Mon Mar 30 2020 01:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46577 * 180.02562 * 9 7 2 11 11 C 1.46845 * 111.00362 * 66.04915 * 10 9 7 12 12 C 1.53032 * 109.52303 * 185.83677 * 11 10 9 13 13 C 1.53114 * 109.28175 * 300.81730 * 12 11 10 14 14 C 1.53127 * 109.15771 * 57.65415 * 13 12 11 15 15 H 1.08998 * 109.50140 * 62.29456 * 14 13 12 16 16 C 1.50703 * 109.50073 * 182.36765 * 14 13 12 17 17 N 1.30500 * 126.37374 * 59.69274 * 16 14 13 18 18 N 1.28568 * 109.66722 * 179.76363 * 17 16 14 19 19 C 1.30673 * 109.63472 * 0.40566 * 18 17 16 20 20 N 1.35166 * 107.33513 * 359.85723 * 19 18 17 21 21 C 1.46802 * 111.15333 * 179.77583 * 20 19 18 22 22 C 1.54429 * 105.56038 * 17.02583 * 21 20 19 23 23 C 1.51346 * 142.71883 * 179.97438 * 19 18 17 24 24 C 1.46849 * 110.99609 * 190.25792 * 10 9 7 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 27 27 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 28 28 H 1.09004 * 109.45622 * 305.85356 * 11 10 9 29 29 H 1.08997 * 109.45994 * 65.81572 * 11 10 9 30 30 H 1.09002 * 109.50567 * 60.76226 * 12 11 10 31 31 H 1.09004 * 109.50007 * 180.87454 * 12 11 10 32 32 H 1.09001 * 109.52941 * 177.56107 * 13 12 11 33 33 H 1.09000 * 109.52138 * 297.75482 * 13 12 11 34 34 H 1.08995 * 110.23057 * 136.04874 * 21 20 19 35 35 H 1.09005 * 110.22482 * 258.00870 * 21 20 19 36 36 H 1.08998 * 110.95701 * 92.52297 * 22 21 20 37 37 H 1.08991 * 110.95990 * 216.26564 * 22 21 20 38 38 H 1.08994 * 110.47209 * 44.75617 * 23 19 18 39 39 H 1.08993 * 110.58439 * 282.20269 * 23 19 18 40 40 H 1.09000 * 109.46006 * 294.17660 * 24 10 9 41 41 H 1.09000 * 109.46486 * 54.14386 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 2.9697 -3.6546 1.2520 12 6 4.0499 -4.7346 1.1591 13 6 3.3880 -6.0909 0.9008 14 6 2.5595 -6.0091 -0.3843 15 1 3.2160 -5.7944 -1.2275 16 6 1.8577 -7.3227 -0.6149 17 7 1.0024 -7.8946 0.1879 18 7 0.5994 -9.0017 -0.3268 19 6 1.1869 -9.1900 -1.4787 20 7 2.0021 -8.1332 -1.6926 21 6 2.7128 -8.2624 -2.9706 22 6 1.9355 -9.3304 -3.7707 23 6 1.2765 -10.1547 -2.6414 24 6 1.5224 -4.8922 -0.2467 25 1 -0.4849 0.8400 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6247 -2.5562 -0.8920 28 1 3.4387 -2.6853 1.4215 29 1 2.2982 -3.8827 2.0796 30 1 4.7300 -4.4997 0.3402 31 1 4.6068 -4.7738 2.0954 32 1 4.1563 -6.8563 0.7909 33 1 2.7376 -6.3440 1.7381 34 1 2.7048 -7.3120 -3.5041 35 1 3.7379 -8.5913 -2.8001 36 1 1.1807 -8.8682 -4.4068 37 1 2.6144 -9.9476 -4.3590 38 1 0.2817 -10.4843 -2.9408 39 1 1.8987 -11.0111 -2.3817 40 1 0.8577 -5.1145 0.5881 41 1 0.9403 -4.8219 -1.1656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336688367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:22 Heat of formation + Delta-G solvation = 81.673461 kcal Electronic energy + Delta-G solvation = -21565.821667 eV Core-core repulsion = 18481.756366 eV Total energy + Delta-G solvation = -3084.065301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.39146 -38.44820 -37.36311 -34.07635 -32.62298 -31.77364 -30.91284 -29.26311 -27.51649 -26.88734 -23.99056 -23.27155 -22.67191 -21.58213 -21.11939 -20.27942 -19.02353 -17.20862 -16.43865 -16.20213 -15.45759 -14.91321 -14.58207 -14.30582 -14.14113 -13.83645 -13.76082 -13.53113 -13.42088 -13.08651 -12.57689 -12.10238 -12.05498 -11.91018 -11.78236 -11.32868 -11.24022 -11.07523 -10.82321 -10.65233 -10.49034 -10.28304 -10.17394 -10.11931 -10.07945 -9.73120 -9.20445 -8.87108 -8.42513 -7.24301 -6.01327 -4.03146 1.79920 2.37666 2.90244 3.33794 3.37993 3.40452 3.53302 4.00052 4.24857 4.30125 4.42953 4.48969 4.83163 4.92115 4.99245 5.09653 5.14808 5.19968 5.29871 5.33925 5.41701 5.45534 5.48194 5.63805 5.75478 5.93167 5.93740 6.15751 6.19373 6.22635 6.29998 6.34079 6.48042 6.74528 6.75781 6.81283 7.30966 7.38281 7.79894 8.09548 8.20973 8.54622 8.81452 9.04101 9.60842 11.09539 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.028043 B = 0.003864 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.209644 B = 7244.309230 C = 7495.610454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.061 3.939 12 C -0.115 4.115 13 C -0.104 4.104 14 C 0.004 3.996 15 H 0.089 0.911 16 C 0.217 3.783 17 N -0.284 5.284 18 N -0.283 5.283 19 C 0.142 3.858 20 N -0.494 5.494 21 C 0.101 3.899 22 C -0.129 4.129 23 C -0.037 4.037 24 C 0.070 3.930 25 H 0.262 0.738 26 H -0.007 1.007 27 H 0.029 0.971 28 H 0.086 0.914 29 H 0.023 0.977 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 -19.077 -7.516 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.260 5.260 11 C -0.067 4.067 12 C -0.153 4.153 13 C -0.143 4.143 14 C -0.018 4.018 15 H 0.107 0.893 16 C -0.050 4.050 17 N -0.123 5.123 18 N -0.123 5.123 19 C -0.126 4.126 20 N -0.186 5.186 21 C -0.021 4.021 22 C -0.167 4.167 23 C -0.077 4.077 24 C -0.060 4.060 25 H 0.071 0.929 26 H 0.011 0.989 27 H 0.047 0.953 28 H 0.104 0.896 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.055 0.945 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.050 -18.956 -6.659 21.293 hybrid contribution 0.556 1.035 -0.483 1.271 sum 7.607 -17.920 -7.142 20.737 Atomic orbital electron populations 1.69954 1.06078 1.26891 1.50833 1.24994 0.94850 0.99292 0.95465 0.86559 0.79423 0.82787 0.78613 1.20206 1.21379 1.20255 1.21110 0.93436 0.89861 1.50255 0.91849 1.19702 0.90017 0.87101 0.96227 1.62031 1.28121 1.02151 1.33747 1.21985 0.94993 0.99040 0.90720 1.21629 0.98338 0.93914 1.01413 1.21565 0.98420 0.97912 0.96397 1.19717 0.96280 0.85749 1.00012 0.89266 1.24688 0.99680 0.96456 0.84153 1.74430 1.11521 1.02703 1.23626 1.73978 1.21597 1.11324 1.05432 1.25891 0.95770 0.92711 0.98208 1.47239 1.34823 1.18619 1.17922 1.22404 0.96556 1.02048 0.81122 1.22808 1.00259 0.96425 0.97241 1.20597 1.03726 0.95265 0.88108 1.21893 0.93795 0.89318 1.00959 0.92852 0.98929 0.95275 0.89604 0.95879 0.91412 0.91799 0.92645 0.91065 0.88334 0.88813 0.89147 0.87846 0.88114 0.88331 0.94463 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.24 8.44 -34.44 -0.29 -14.53 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 9 C 0.19 5.15 4.72 -4.97 -0.02 5.12 16 10 N -0.54 -11.63 4.65 -236.11 -1.10 -12.72 16 11 C 0.06 1.19 5.30 -3.84 -0.02 1.17 16 12 C -0.11 -1.75 6.09 -26.66 -0.16 -1.91 16 13 C -0.10 -1.54 5.27 -26.61 -0.14 -1.68 16 14 C 0.00 0.06 2.82 -91.69 -0.26 -0.20 16 15 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 16 C 0.22 3.46 6.82 -154.89 -1.06 2.40 16 17 N -0.28 -5.26 12.21 32.82 0.40 -4.86 16 18 N -0.28 -4.93 12.22 32.93 0.40 -4.53 16 19 C 0.14 1.87 8.69 -154.84 -1.35 0.52 16 20 N -0.49 -6.28 3.62 -109.38 -0.40 -6.68 16 21 C 0.10 0.75 7.77 -3.13 -0.02 0.72 16 22 C -0.13 -0.61 7.17 -25.16 -0.18 -0.79 16 23 C -0.04 -0.26 6.85 -26.74 -0.18 -0.44 16 24 C 0.07 1.35 4.73 -3.83 -0.02 1.33 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H -0.01 -0.20 8.12 -51.93 -0.42 -0.63 16 27 H 0.03 0.82 7.98 -51.93 -0.41 0.41 16 28 H 0.09 1.79 6.71 -51.93 -0.35 1.44 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.29 8.01 -51.93 -0.42 0.88 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -34.31 329.08 -10.42 -44.74 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -6.61 Total: -4.48 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.80 Total: -6.81 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.05 Total: -54.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.31 -10.42 -44.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336688367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.409 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds