Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35684 * 116.99790 * 2 1 4 4 C 1.38916 * 119.67920 * 179.97438 * 3 2 1 5 5 C 1.38384 * 119.10702 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.75392 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47009 * 90.00620 * 6 5 4 8 8 C 1.36938 * 120.00265 * 89.99853 * 7 6 5 9 9 H 1.08000 * 120.00044 * 217.19553 * 8 7 6 10 10 C 1.38820 * 119.99880 * 37.19001 * 8 7 6 11 11 N 1.31613 * 119.99865 * 21.27358 * 10 8 7 12 12 Si 1.86803 * 119.99702 * 201.27145 * 10 8 7 13 13 H 1.48495 * 109.47028 * 90.00422 * 12 10 8 14 14 H 1.48505 * 109.46503 * 210.00134 * 12 10 8 15 15 H 1.48497 * 109.47163 * 330.00127 * 12 10 8 16 16 C 1.46496 * 120.00024 * 269.99621 * 7 6 5 17 17 C 1.54269 * 110.03586 * 241.23529 * 16 7 6 18 18 C 1.54966 * 104.16111 * 217.13583 * 17 16 7 19 19 C 1.54889 * 102.77531 * 37.88567 * 18 17 16 20 20 C 1.53875 * 110.03298 * 124.01625 * 16 7 6 21 21 C 1.38828 * 118.48819 * 0.28250 * 5 4 3 22 22 C 1.38051 * 119.28305 * 359.46881 * 21 5 4 23 23 N 1.31962 * 120.84009 * 0.53998 * 22 21 5 24 24 H 1.09007 * 109.47085 * 59.99554 * 1 2 3 25 25 H 1.08989 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46848 * 300.00253 * 1 2 3 27 27 H 1.07994 * 120.45229 * 359.97438 * 4 3 2 28 28 H 1.09003 * 109.46826 * 209.99805 * 6 5 4 29 29 H 1.09000 * 109.47604 * 330.00435 * 6 5 4 30 30 H 0.97005 * 119.99922 * 174.94961 * 11 10 8 31 31 H 1.09003 * 110.01356 * 2.62521 * 16 7 6 32 32 H 1.09004 * 110.48253 * 335.78404 * 17 16 7 33 33 H 1.08995 * 110.48888 * 98.42485 * 17 16 7 34 34 H 1.09003 * 110.72139 * 279.57562 * 18 17 16 35 35 H 1.08999 * 110.92155 * 156.29324 * 18 17 16 36 36 H 1.09000 * 110.48520 * 203.40663 * 19 18 17 37 37 H 1.09003 * 110.60203 * 80.81816 * 19 18 17 38 38 H 1.09001 * 110.03057 * 238.57322 * 20 16 7 39 39 H 1.09002 * 110.03327 * 359.95042 * 20 16 7 40 40 H 1.07997 * 120.35914 * 179.72008 * 21 5 4 41 41 H 1.08004 * 119.57915 * 180.25362 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5132 0.0000 6 6 5.5512 2.6269 0.0000 7 7 6.0381 2.6633 -1.3813 8 6 6.1762 3.8628 -2.0273 9 1 5.9416 3.9401 -3.0787 10 6 6.6175 4.9796 -1.3307 11 7 7.2891 4.8321 -0.2085 12 14 6.2582 6.6915 -1.9863 13 1 4.9632 7.1694 -1.4387 14 1 7.3427 7.6176 -1.5723 15 1 6.1831 6.6482 -3.4687 16 6 6.3774 1.4164 -2.0714 17 6 7.8686 1.4199 -2.4665 18 6 7.8966 0.7170 -3.8473 19 6 6.6066 1.2420 -4.5251 20 6 5.5752 1.3029 -3.3796 21 6 3.2505 3.6492 0.0049 22 6 1.8771 3.5097 -0.0010 23 7 1.3186 2.3141 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.0229 0.3696 0.0014 28 1 5.8463 3.5421 0.5134 29 1 5.9807 1.7671 0.5141 30 1 7.6607 5.6079 0.2399 31 1 6.1638 0.5635 -1.4272 32 1 8.2384 2.4418 -2.5513 33 1 8.4571 0.8594 -1.7402 34 1 7.8578 -0.3659 -3.7296 35 1 8.7788 1.0110 -4.4159 36 1 6.2751 0.5515 -5.3006 37 1 6.7703 2.2348 -4.9442 38 1 4.9730 0.3944 -3.3706 39 1 4.9328 2.1752 -3.5006 40 1 3.6993 4.6315 0.0092 41 1 1.2517 4.3903 -0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342866340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -5.659404 kcal Electronic energy + Delta-G solvation = -22112.298007 eV Core-core repulsion = 18992.152917 eV Total energy + Delta-G solvation = -3120.145090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46824 -39.46928 -38.69287 -36.25744 -33.93750 -32.44922 -31.54759 -29.34940 -28.68743 -28.16838 -27.43915 -24.64168 -24.12653 -22.34024 -21.31208 -20.78149 -18.95913 -18.00530 -17.86666 -17.01119 -16.89472 -16.72842 -16.37899 -15.94898 -15.32625 -15.21509 -15.08183 -14.56023 -14.20991 -14.10845 -13.94015 -13.12548 -13.12391 -12.83802 -12.69796 -12.55575 -12.26709 -12.23778 -12.05838 -11.92599 -11.77529 -11.72102 -11.68504 -11.33035 -11.18765 -10.59105 -10.49153 -10.40345 -9.38601 -8.47614 -7.82519 -5.37040 0.30872 0.44251 1.45186 1.49976 1.55604 2.21025 2.51616 2.89626 3.27408 3.46484 3.72501 3.98150 4.00657 4.10112 4.23300 4.30822 4.33722 4.44828 4.46541 4.54806 4.68208 4.72691 4.78343 4.81834 4.87940 4.94775 4.96505 4.99060 5.14256 5.20344 5.24954 5.32198 5.50215 5.53786 5.60057 5.64956 5.72081 5.78594 5.86169 6.34121 6.54490 6.92874 7.19887 7.88582 8.42026 9.17632 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.007250 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.805147 B = 3861.120452 C = 5180.885877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.323 6.323 3 C 0.302 3.698 4 C -0.195 4.195 5 C -0.006 4.006 6 C 0.177 3.823 7 N -0.576 5.576 8 C -0.241 4.241 9 H 0.050 0.950 10 C -0.024 4.024 11 N -0.913 5.913 12 Si 0.940 3.060 13 H -0.281 1.281 14 H -0.296 1.296 15 H -0.277 1.277 16 C 0.163 3.837 17 C -0.127 4.127 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.200 4.200 22 C 0.131 3.869 23 N -0.557 5.557 24 H 0.052 0.948 25 H 0.124 0.876 26 H 0.055 0.945 27 H 0.136 0.864 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.253 0.747 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.120 0.880 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.872 -8.045 -1.572 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.124 3.876 4 C -0.216 4.216 5 C -0.016 4.016 6 C 0.051 3.949 7 N -0.295 5.295 8 C -0.372 4.372 9 H 0.068 0.932 10 C -0.221 4.221 11 N -0.557 5.557 12 Si 0.770 3.230 13 H -0.208 1.208 14 H -0.223 1.223 15 H -0.202 1.202 16 C 0.057 3.943 17 C -0.166 4.166 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.165 4.165 21 C -0.221 4.221 22 C -0.023 4.023 23 N -0.283 5.283 24 H 0.071 0.929 25 H 0.142 0.858 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.138 0.862 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.626 -8.274 -1.438 12.039 hybrid contribution 0.714 1.533 -0.135 1.696 sum -7.912 -6.742 -1.573 10.513 Atomic orbital electron populations 1.23016 0.76091 1.04457 1.02039 1.86202 1.24252 1.24354 1.88242 1.19909 0.89448 0.85019 0.93229 1.20955 0.91803 0.99014 1.09854 1.21398 0.99521 0.91720 0.89005 1.19931 0.85245 1.02010 0.87753 1.43957 1.72482 1.01877 1.11150 1.18910 1.37529 0.86502 0.94215 0.93198 1.25620 0.97548 1.00923 0.98050 1.69979 1.35966 1.29593 1.20188 0.85696 0.77407 0.81663 0.78282 1.20762 1.22281 1.20221 1.21282 0.92666 0.87663 0.92677 1.22687 0.97643 0.99692 0.96622 1.22400 0.97378 0.99910 0.95300 1.22222 0.95458 1.00249 0.97160 1.22449 0.98050 1.00050 0.95995 1.21924 0.94879 0.99565 1.05778 1.22657 0.92604 0.94042 0.93032 1.67285 1.40825 0.98923 1.21224 0.92915 0.85839 0.92589 0.84571 0.89883 0.93952 0.93779 0.92478 0.93541 0.93188 0.90368 0.91654 0.90569 0.93515 0.92143 0.93936 0.86163 0.80156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 10.38 113.37 1.18 2.04 16 2 O -0.32 -10.00 10.48 -90.03 -0.94 -10.94 16 3 C 0.30 10.64 7.49 84.79 0.63 11.28 16 4 C -0.19 -7.19 9.75 22.47 0.22 -6.97 16 5 C -0.01 -0.24 5.50 -19.69 -0.11 -0.35 16 6 C 0.18 7.94 5.43 85.63 0.47 8.41 16 7 N -0.58 -26.67 2.37 -678.30 -1.61 -28.28 16 8 C -0.24 -12.29 7.75 84.04 0.65 -11.64 16 9 H 0.05 2.64 7.00 -2.91 -0.02 2.62 16 10 C -0.02 -1.24 4.96 84.87 0.42 -0.82 16 11 N -0.91 -50.02 11.43 21.65 0.25 -49.78 16 12 Si 0.94 42.75 29.61 68.60 2.03 44.78 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 16 C 0.16 6.52 3.41 45.72 0.16 6.67 16 17 C -0.13 -4.88 6.43 31.70 0.20 -4.68 16 18 C -0.11 -3.38 6.91 31.91 0.22 -3.16 16 19 C -0.11 -3.57 6.83 31.67 0.22 -3.35 16 20 C -0.13 -4.58 6.15 31.32 0.19 -4.39 16 21 C -0.20 -7.75 9.81 22.37 0.22 -7.53 16 22 C 0.13 4.38 11.17 84.63 0.95 5.32 16 23 N -0.56 -19.18 9.22 -308.94 -2.85 -22.02 16 24 H 0.05 1.20 8.10 -2.38 -0.02 1.19 16 25 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 27 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.08 4.25 5.44 -2.39 -0.01 4.23 16 29 H 0.04 1.81 7.92 -2.39 -0.02 1.79 16 30 H 0.25 13.55 8.32 -92.70 -0.77 12.78 16 31 H 0.06 2.16 7.85 -2.39 -0.02 2.14 16 32 H 0.05 2.14 7.17 -2.39 -0.02 2.13 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.04 1.78 6.79 -2.39 -0.02 1.76 16 40 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 41 H 0.18 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -58.22 334.25 3.50 -54.72 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 1.00 Total: 20.67 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.61 Total: -9.16 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -4.21 Total: -100.08 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.94 Total: -10.94 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -58.22 3.50 -54.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342866340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.063 kcal (2) G-P(sol) polarization free energy of solvation -58.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds