Wall clock time and date at job start Mon Mar 30 2020 01:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48500 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47128 * 299.99529 * 3 2 1 6 6 H 1.48496 * 109.47396 * 59.99568 * 3 2 1 7 7 C 1.37881 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47139 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46933 * 179.97438 * 10 9 7 12 12 C 1.31551 * 119.99315 * 114.20907 * 11 10 9 13 13 C 1.41669 * 120.86958 * 353.56534 * 12 11 10 14 14 C 1.35886 * 118.81925 * 180.02562 * 13 12 11 15 15 N 1.33391 * 120.56236 * 359.97438 * 14 13 12 16 16 C 1.31575 * 121.90252 * 359.97438 * 15 14 13 17 17 N 1.36961 * 119.41838 * 179.97438 * 16 15 14 18 18 C 1.46852 * 110.99962 * 124.21409 * 17 16 15 19 19 C 1.53031 * 109.52467 * 174.15988 * 18 17 16 20 20 C 1.53123 * 109.27712 * 59.17957 * 19 18 17 21 21 C 1.53116 * 109.16028 * 302.34269 * 20 19 18 22 22 C 1.46840 * 111.00309 * 0.02562 * 17 16 15 23 23 N 1.36349 * 121.16355 * 0.02562 * 16 15 14 24 24 H 0.97005 * 120.36123 * 180.27119 * 23 16 15 25 25 H 0.96999 * 119.99948 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47143 * 59.99545 * 9 7 2 27 27 H 1.08998 * 109.46756 * 300.00018 * 9 7 2 28 28 H 1.08994 * 109.46704 * 60.00080 * 10 9 7 29 29 H 1.09001 * 109.47095 * 300.00099 * 10 9 7 30 30 H 1.07998 * 120.58937 * 0.04716 * 13 12 11 31 31 H 1.08000 * 119.71745 * 179.97438 * 14 13 12 32 32 H 1.08999 * 109.46272 * 294.17893 * 18 17 16 33 33 H 1.09000 * 109.45943 * 54.14283 * 18 17 16 34 34 H 1.08997 * 109.50539 * 299.23937 * 19 18 17 35 35 H 1.09000 * 109.50303 * 179.12177 * 19 18 17 36 36 H 1.09004 * 109.52084 * 182.43814 * 20 19 18 37 37 H 1.08998 * 109.57210 * 62.28640 * 20 19 18 38 38 H 1.08998 * 109.50384 * 297.71946 * 21 20 19 39 39 H 1.09000 * 109.53555 * 177.61796 * 21 20 19 40 40 H 1.09006 * 109.45970 * 305.85350 * 22 17 16 41 41 H 1.09002 * 109.46620 * 65.83216 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 1.5883 -5.7342 -1.0378 13 6 2.2599 -5.3337 -2.2191 14 6 2.3121 -6.1967 -3.2675 15 7 1.7414 -7.3995 -3.1850 16 6 1.1123 -7.7977 -2.1002 17 7 0.5440 -9.0435 -2.0712 18 6 1.0506 -9.8267 -0.9369 19 6 0.2907 -11.1522 -0.8505 20 6 0.4797 -11.9292 -2.1563 21 6 -0.0111 -11.0724 -3.3266 22 6 0.7580 -9.7493 -3.3409 23 7 1.0152 -6.9916 -1.0048 24 1 0.5520 -7.2985 -0.2097 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5566 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 2.7225 -4.3601 -2.2851 31 1 2.8201 -5.9061 -4.1753 32 1 2.1129 -10.0256 -1.0785 33 1 0.9064 -9.2646 -0.0142 34 1 -0.7698 -10.9543 -0.6951 35 1 0.6776 -11.7399 -0.0181 36 1 -0.0951 -12.8545 -2.1161 37 1 1.5357 -12.1622 -2.2930 38 1 -1.0764 -10.8731 -3.2100 39 1 0.1596 -11.6028 -4.2634 40 1 0.4011 -9.1310 -4.1647 41 1 1.8217 -9.9489 -3.4709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353281474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:32 Heat of formation + Delta-G solvation = 49.148292 kcal Electronic energy + Delta-G solvation = -20890.562230 eV Core-core repulsion = 17805.086531 eV Total energy + Delta-G solvation = -3085.475699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.39925 -39.86300 -37.22039 -35.62622 -35.28647 -34.07791 -31.94243 -31.67165 -29.96148 -26.95899 -26.29613 -24.84007 -23.87917 -23.46463 -21.78117 -20.67622 -19.72286 -18.63959 -18.46861 -18.10614 -16.73536 -16.57767 -16.50944 -15.76818 -15.53943 -15.34253 -14.92631 -14.82943 -14.51471 -14.33445 -14.23334 -13.78483 -13.58648 -13.25804 -12.97686 -12.76746 -12.39815 -12.22716 -12.12561 -11.97400 -11.70144 -11.49125 -11.44816 -11.40328 -11.29802 -10.88298 -10.63038 -10.08021 -10.02738 -8.46742 -8.21833 -6.37481 -0.17902 0.91467 1.24987 1.38268 1.40044 1.53937 2.37090 2.43249 2.71021 3.08776 3.38269 3.71266 3.83636 3.87394 3.95728 4.02129 4.19915 4.29654 4.32971 4.46335 4.48983 4.60983 4.70180 4.74695 4.78788 4.90191 4.96569 5.02218 5.06207 5.16577 5.25113 5.28080 5.34238 5.42348 5.49237 5.52900 5.59903 5.70496 5.77210 6.12538 6.24419 6.78300 6.92072 7.11668 7.32765 8.89325 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.044320 B = 0.003029 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.611803 B = 9242.188389 C = 9480.095142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.043 3.957 10 C 0.090 3.910 11 N -0.641 5.641 12 C 0.397 3.603 13 C -0.323 4.323 14 C 0.173 3.827 15 N -0.599 5.599 16 C 0.578 3.422 17 N -0.475 5.475 18 C 0.050 3.950 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.117 4.117 22 C 0.076 3.924 23 N -0.611 5.611 24 H 0.423 0.577 25 H 0.265 0.735 26 H -0.023 1.023 27 H -0.016 1.016 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.138 0.862 31 H 0.188 0.812 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -28.062 -7.489 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.005 3.995 10 C -0.040 4.040 11 N -0.369 5.369 12 C 0.127 3.873 13 C -0.352 4.352 14 C 0.032 3.968 15 N -0.331 5.331 16 C 0.223 3.777 17 N -0.196 5.196 18 C -0.075 4.075 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.049 4.049 23 N -0.238 5.238 24 H 0.262 0.738 25 H 0.073 0.927 26 H -0.004 1.004 27 H 0.002 0.998 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.155 0.845 31 H 0.205 0.795 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.085 -28.167 -7.277 29.167 hybrid contribution 0.708 2.048 0.442 2.212 sum 2.793 -26.119 -6.835 27.143 Atomic orbital electron populations 1.70153 1.08169 1.27899 1.51370 1.26117 0.95828 1.03821 0.94333 0.85242 0.79050 0.77863 0.77918 1.18143 1.20070 1.20181 1.21635 0.93683 0.91779 1.51098 0.91575 1.18881 0.94088 0.92585 0.93960 1.21820 0.95238 0.87255 0.99703 1.72216 1.28843 1.08364 1.27478 1.18986 0.90543 0.85265 0.92511 1.22295 1.12596 1.04714 0.95594 1.22394 0.90241 0.86490 0.97649 1.68504 1.21060 1.20396 1.23157 1.20955 0.84611 0.89900 0.82189 1.58205 1.52197 0.99541 1.09632 1.22514 0.98762 0.95559 0.90628 1.21648 1.01085 0.92984 0.99369 1.21648 1.02113 0.98725 0.93592 1.21717 1.00221 0.93428 1.00167 1.22142 1.00706 0.94893 0.87201 1.42449 1.51931 1.12387 1.17035 0.73763 0.92655 1.00433 0.99793 0.92004 0.93736 0.84473 0.79515 0.92104 0.89784 0.90732 0.88730 0.89875 0.91355 0.91265 0.88936 0.89841 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.46 13.29 21.45 0.28 -60.17 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.98 46.02 29.54 68.60 2.03 48.05 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.54 -33.19 9.11 25.60 0.23 -32.95 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.04 2.56 5.30 29.85 0.16 2.72 16 10 C 0.09 4.46 6.14 86.38 0.53 4.99 16 11 N -0.64 -29.22 10.68 -344.02 -3.67 -32.89 16 12 C 0.40 15.01 7.72 134.21 1.04 16.04 16 13 C -0.32 -11.23 9.23 22.57 0.21 -11.02 16 14 C 0.17 4.73 11.15 83.91 0.94 5.67 16 15 N -0.60 -15.51 8.57 -198.25 -1.70 -17.21 16 16 C 0.58 14.27 7.22 260.81 1.88 16.15 16 17 N -0.48 -8.48 4.68 -707.60 -3.31 -11.80 16 18 C 0.05 0.65 5.30 86.32 0.46 1.11 16 19 C -0.11 -0.94 6.09 30.65 0.19 -0.76 16 20 C -0.12 -0.87 6.00 30.67 0.18 -0.68 16 21 C -0.12 -1.08 6.09 30.65 0.19 -0.90 16 22 C 0.08 1.12 4.62 86.33 0.40 1.52 16 23 N -0.61 -17.64 5.20 -194.07 -1.01 -18.65 16 24 H 0.42 10.75 7.73 -92.70 -0.72 10.04 16 25 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 26 H -0.02 -1.50 8.14 -2.39 -0.02 -1.51 16 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 28 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.04 2.08 5.31 -2.39 -0.01 2.07 16 30 H 0.14 5.11 5.89 -2.91 -0.02 5.09 16 31 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.09 6.82 -2.39 -0.02 1.08 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 1.45 7.67 -2.38 -0.02 1.43 16 41 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 Total: -1.00 -77.16 329.74 -0.22 -77.38 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.31 Total: 13.16 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 6.86 Total: 2.14 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -9.41 Total: -140.72 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -77.16 -0.22 -77.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353281474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.528 kcal (2) G-P(sol) polarization free energy of solvation -77.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds