Wall clock time and date at job start Mon Mar 30 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 H 1.09001 * 109.46847 * 57.47540 * 3 2 1 5 5 C 1.50694 * 109.46799 * 177.47334 * 3 2 1 6 6 H 1.08003 * 120.00141 * 120.00802 * 5 3 2 7 7 C 1.37877 * 120.00222 * 299.99927 * 5 3 2 8 8 N 1.31509 * 119.99816 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00070 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47270 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46958 * 119.99926 * 9 7 5 12 12 H 1.48492 * 109.47117 * 239.99700 * 9 7 5 13 13 N 1.46894 * 109.47066 * 297.47307 * 3 2 1 14 14 C 1.46903 * 110.99812 * 159.12198 * 13 3 2 15 15 C 1.53120 * 109.52221 * 158.68491 * 14 13 3 16 16 C 1.53037 * 109.28262 * 177.56050 * 15 14 13 17 17 N 1.46852 * 109.51959 * 300.82631 * 16 15 14 18 18 C 1.46906 * 110.99679 * 185.83747 * 17 16 15 19 19 C 1.52996 * 109.47084 * 77.71528 * 18 17 16 20 20 F 1.39897 * 109.47470 * 293.85369 * 19 18 17 21 21 F 1.39903 * 109.47042 * 53.85659 * 19 18 17 22 22 C 1.46842 * 111.20132 * 61.73723 * 17 16 15 23 23 C 1.53038 * 109.52444 * 298.25837 * 22 17 16 24 24 H 1.09000 * 109.47526 * 185.51815 * 1 2 3 25 25 H 1.09007 * 109.46723 * 305.51335 * 1 2 3 26 26 H 1.08996 * 109.46870 * 65.50960 * 1 2 3 27 27 H 1.08995 * 109.46572 * 239.99638 * 2 1 3 28 28 H 1.09002 * 109.46508 * 120.00195 * 2 1 3 29 29 H 0.97001 * 119.99914 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00125 * 35.17024 * 13 3 2 31 31 H 1.08994 * 109.57491 * 38.53035 * 14 13 3 32 32 H 1.09005 * 109.50139 * 57.61885 * 15 14 13 33 33 H 1.09001 * 109.50538 * 297.50321 * 15 14 13 34 34 H 1.08998 * 109.45938 * 60.83129 * 16 15 14 35 35 H 1.08997 * 109.46682 * 180.81811 * 16 15 14 36 36 H 1.09000 * 109.46620 * 197.71827 * 18 17 16 37 37 H 1.09001 * 109.46677 * 317.71451 * 18 17 16 38 38 H 1.09000 * 109.46930 * 173.85573 * 19 18 17 39 39 H 1.09006 * 109.46379 * 58.27350 * 22 17 16 40 40 H 1.08998 * 109.46462 * 178.23895 * 22 17 16 41 41 H 1.09000 * 109.50222 * 179.12137 * 23 22 17 42 42 H 1.09002 * 109.50119 * 299.23631 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6403 1.9692 0.8665 5 6 3.5457 1.4428 0.0626 6 1 4.1192 1.8987 -0.7310 7 6 4.1913 0.8612 1.1331 8 7 3.4931 0.3066 2.0998 9 14 6.0577 0.8622 1.2111 10 1 6.6030 1.5454 0.0106 11 1 6.5017 1.5800 2.4329 12 1 6.5522 -0.5374 1.2521 13 7 1.6010 2.1171 -1.2288 14 6 1.6233 3.5767 -1.0646 15 6 1.6886 4.2454 -2.4406 16 6 1.6502 5.7653 -2.2662 17 7 0.4131 6.1487 -1.5739 18 6 0.2759 7.6100 -1.5116 19 6 -0.1971 8.1360 -2.8682 20 9 0.8004 7.9212 -3.8253 21 9 -1.3621 7.4618 -3.2494 22 6 0.3504 5.5565 -0.2316 23 6 0.3500 4.0304 -0.3453 24 1 -0.3634 -1.0229 0.0988 25 1 -0.3633 0.5970 0.8366 26 1 -0.3633 0.4260 -0.9352 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.9473 -0.1022 2.8531 30 1 0.6853 1.7987 -1.5087 31 1 2.4955 3.8650 -0.4779 32 1 0.8366 3.9264 -3.0410 33 1 2.6141 3.9598 -2.9405 34 1 2.5098 6.0851 -1.6773 35 1 1.6818 6.2442 -3.2448 36 1 -0.4528 7.8741 -0.7452 37 1 1.2399 8.0552 -1.2652 38 1 -0.4035 9.2036 -2.7919 39 1 1.2162 5.8773 0.3477 40 1 -0.5617 5.8837 0.2675 41 1 0.3192 3.5911 0.6518 42 1 -0.5231 3.7080 -0.9128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358277729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:42 Heat of formation + Delta-G solvation = -109.853763 kcal Electronic energy + Delta-G solvation = -22714.917098 eV Core-core repulsion = 19171.857367 eV Total energy + Delta-G solvation = -3543.059731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.171 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.95354 -46.95008 -38.96902 -36.27707 -33.60394 -31.75527 -30.56470 -30.28313 -28.02388 -26.15464 -23.51244 -22.81025 -22.53481 -21.49301 -19.66765 -19.19784 -17.69842 -17.35035 -16.43107 -16.15555 -15.54571 -14.90451 -14.80395 -14.30413 -14.03710 -13.87449 -13.70121 -13.32802 -13.30601 -12.96373 -12.66603 -12.57477 -12.24389 -12.08902 -11.89176 -11.63079 -11.34275 -11.13629 -10.88997 -10.85075 -10.59593 -10.56784 -10.17290 -10.11132 -9.95264 -9.62360 -9.37232 -8.96885 -8.36847 -8.34212 -7.12162 -5.95171 -3.98638 3.31316 3.39539 3.44800 3.60661 3.84708 4.14465 4.37879 4.46080 4.80187 5.03144 5.14170 5.23781 5.30908 5.34358 5.35976 5.55250 5.59851 5.71027 5.92363 6.06873 6.15710 6.17905 6.20500 6.21279 6.33998 6.40887 6.49403 6.68612 6.87188 6.89587 7.00632 7.10443 7.16783 7.25585 7.59036 7.81964 7.95363 8.37592 8.42938 8.83807 9.10020 9.66339 11.10332 Molecular weight = 276.17amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.004406 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.179016 B = 6353.733581 C = 6967.319555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.095 3.905 15 C -0.101 4.101 16 C 0.043 3.957 17 N -0.532 5.532 18 C 0.000 4.000 19 C 0.271 3.729 20 F -0.205 7.205 21 F -0.196 7.196 22 C 0.064 3.936 23 C -0.144 4.144 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.258 0.742 30 H 0.317 0.683 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 14.540 -5.895 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.311 5.311 14 C -0.016 4.016 15 C -0.140 4.140 16 C -0.084 4.084 17 N -0.257 5.257 18 C -0.130 4.130 19 C 0.216 3.784 20 F -0.187 7.187 21 F -0.178 7.178 22 C -0.064 4.064 23 C -0.184 4.184 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.125 0.875 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.627 14.174 -6.312 17.289 hybrid contribution 0.861 0.341 1.193 1.510 sum -6.766 14.515 -5.119 16.813 Atomic orbital electron populations 1.21884 0.99673 0.99626 0.99573 1.21729 0.91123 1.00373 1.02961 1.19140 0.94945 0.89774 0.85009 0.98184 1.21254 0.91117 1.35420 1.05210 0.92145 1.24948 0.98119 0.95717 0.95743 1.69885 1.34736 1.38889 1.10148 0.86530 0.86051 0.77629 0.77729 1.19822 1.21326 1.21128 1.60756 1.30324 1.02672 1.37376 1.21476 0.96072 0.89569 0.94489 1.21551 1.02318 0.91948 0.98154 1.22485 0.88873 0.97897 0.99191 1.61931 1.38214 1.05998 1.19524 1.23201 1.02623 0.91325 0.95848 1.21965 0.74218 0.96214 0.85974 1.92912 1.62219 1.96145 1.67411 1.92997 1.49123 1.83297 1.92346 1.22063 1.00273 0.96075 0.88033 1.22357 1.00446 0.93768 1.01799 0.94477 0.94047 0.94395 0.94034 0.88521 0.93220 0.86483 0.90288 0.91830 0.90976 0.94843 0.89536 0.88216 0.91656 0.87480 0.94665 0.91283 0.91329 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.57 37.16 0.36 -2.56 16 2 C -0.12 -2.92 5.39 -26.73 -0.14 -3.06 16 3 C 0.22 5.37 1.92 -68.87 -0.13 5.24 16 4 H 0.00 0.02 6.92 -51.93 -0.36 -0.34 16 5 C -0.49 -13.47 8.26 -34.44 -0.28 -13.76 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 8 N -0.90 -25.43 11.30 55.43 0.63 -24.81 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.68 -14.37 6.03 -100.83 -0.61 -14.98 16 14 C 0.10 1.77 2.36 -67.59 -0.16 1.61 16 15 C -0.10 -1.66 5.70 -26.65 -0.15 -1.81 16 16 C 0.04 0.61 5.23 -3.83 -0.02 0.59 16 17 N -0.53 -7.00 4.39 -234.67 -1.03 -8.03 16 18 C 0.00 0.00 5.39 -3.82 -0.02 -0.02 16 19 C 0.27 2.51 5.59 37.16 0.21 2.72 16 20 F -0.21 -2.37 14.75 2.25 0.03 -2.34 16 21 F -0.20 -2.41 17.15 2.25 0.04 -2.37 16 22 C 0.06 0.87 5.42 -3.84 -0.02 0.85 16 23 C -0.14 -2.36 5.33 -26.65 -0.14 -2.50 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.67 6.54 -51.93 -0.34 0.33 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 2.56 6.01 -51.93 -0.31 2.25 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.32 6.24 6.23 -39.29 -0.24 6.00 16 31 H 0.08 1.69 7.51 -51.93 -0.39 1.30 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 1.19 5.53 -51.93 -0.29 0.90 16 36 H 0.10 0.77 7.76 -51.93 -0.40 0.37 16 37 H 0.07 0.57 7.97 -51.93 -0.41 0.15 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 41 H 0.07 1.22 7.20 -51.93 -0.37 0.85 16 42 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -29.27 328.90 -8.49 -37.76 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.88 Total: 4.61 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -0.61 Total: -11.28 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -1.01 Total: -47.82 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.07 Total: -4.71 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.27 -8.49 -37.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.090 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds