Wall clock time and date at job start Mon Mar 30 2020 02:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 H 1.09001 * 109.46847 * 57.47540 * 3 2 1 5 5 C 1.50694 * 109.46799 * 177.47334 * 3 2 1 6 6 H 1.08003 * 120.00141 * 120.00802 * 5 3 2 7 7 C 1.37877 * 120.00222 * 299.99927 * 5 3 2 8 8 N 1.31509 * 119.99816 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00070 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47270 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46958 * 119.99926 * 9 7 5 12 12 H 1.48492 * 109.47117 * 239.99700 * 9 7 5 13 13 N 1.46894 * 109.47066 * 297.47307 * 3 2 1 14 14 C 1.46903 * 110.99812 * 159.12198 * 13 3 2 15 15 C 1.53120 * 109.52221 * 158.68491 * 14 13 3 16 16 C 1.53037 * 109.28262 * 177.56050 * 15 14 13 17 17 N 1.46852 * 109.51959 * 300.82631 * 16 15 14 18 18 C 1.46906 * 110.99679 * 185.83747 * 17 16 15 19 19 C 1.52996 * 109.47084 * 77.71528 * 18 17 16 20 20 F 1.39897 * 109.47470 * 293.85369 * 19 18 17 21 21 F 1.39903 * 109.47042 * 53.85659 * 19 18 17 22 22 C 1.46842 * 111.20132 * 61.73723 * 17 16 15 23 23 C 1.53038 * 109.52444 * 298.25837 * 22 17 16 24 24 H 1.09000 * 109.47526 * 185.51815 * 1 2 3 25 25 H 1.09007 * 109.46723 * 305.51335 * 1 2 3 26 26 H 1.08996 * 109.46870 * 65.50960 * 1 2 3 27 27 H 1.08995 * 109.46572 * 239.99638 * 2 1 3 28 28 H 1.09002 * 109.46508 * 120.00195 * 2 1 3 29 29 H 0.97001 * 119.99914 * 180.02562 * 8 7 5 30 30 H 1.00903 * 111.00125 * 35.17024 * 13 3 2 31 31 H 1.08994 * 109.57491 * 38.53035 * 14 13 3 32 32 H 1.09005 * 109.50139 * 57.61885 * 15 14 13 33 33 H 1.09001 * 109.50538 * 297.50321 * 15 14 13 34 34 H 1.08998 * 109.45938 * 60.83129 * 16 15 14 35 35 H 1.08997 * 109.46682 * 180.81811 * 16 15 14 36 36 H 1.09000 * 109.46620 * 197.71827 * 18 17 16 37 37 H 1.09001 * 109.46677 * 317.71451 * 18 17 16 38 38 H 1.09000 * 109.46930 * 173.85573 * 19 18 17 39 39 H 1.09006 * 109.46379 * 58.27350 * 22 17 16 40 40 H 1.08998 * 109.46462 * 178.23895 * 22 17 16 41 41 H 1.09000 * 109.50222 * 179.12137 * 23 22 17 42 42 H 1.09002 * 109.50119 * 299.23631 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6403 1.9692 0.8665 5 6 3.5457 1.4428 0.0626 6 1 4.1192 1.8987 -0.7310 7 6 4.1913 0.8612 1.1331 8 7 3.4931 0.3066 2.0998 9 14 6.0577 0.8622 1.2111 10 1 6.6030 1.5454 0.0106 11 1 6.5017 1.5800 2.4329 12 1 6.5522 -0.5374 1.2521 13 7 1.6010 2.1171 -1.2288 14 6 1.6233 3.5767 -1.0646 15 6 1.6886 4.2454 -2.4406 16 6 1.6502 5.7653 -2.2662 17 7 0.4131 6.1487 -1.5739 18 6 0.2759 7.6100 -1.5116 19 6 -0.1971 8.1360 -2.8682 20 9 0.8004 7.9212 -3.8253 21 9 -1.3621 7.4618 -3.2494 22 6 0.3504 5.5565 -0.2316 23 6 0.3500 4.0304 -0.3453 24 1 -0.3634 -1.0229 0.0988 25 1 -0.3633 0.5970 0.8366 26 1 -0.3633 0.4260 -0.9352 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.9473 -0.1022 2.8531 30 1 0.6853 1.7987 -1.5087 31 1 2.4955 3.8650 -0.4779 32 1 0.8366 3.9264 -3.0410 33 1 2.6141 3.9598 -2.9405 34 1 2.5098 6.0851 -1.6773 35 1 1.6818 6.2442 -3.2448 36 1 -0.4528 7.8741 -0.7452 37 1 1.2399 8.0552 -1.2652 38 1 -0.4035 9.2036 -2.7919 39 1 1.2162 5.8773 0.3477 40 1 -0.5617 5.8837 0.2675 41 1 0.3192 3.5911 0.6518 42 1 -0.5231 3.7080 -0.9128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358277729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:41 Heat of formation + Delta-G solvation = -128.888421 kcal Electronic energy + Delta-G solvation = -22715.742503 eV Core-core repulsion = 19171.857367 eV Total energy + Delta-G solvation = -3543.885136 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.171 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.73558 -47.75646 -40.24209 -37.88938 -35.16944 -33.65754 -31.79901 -31.62277 -29.35535 -27.97150 -25.04006 -24.13949 -23.80690 -22.61710 -21.45760 -20.67738 -18.50001 -18.27622 -18.13411 -17.25308 -16.84262 -16.74274 -15.89516 -15.83448 -15.55643 -14.96831 -14.93341 -14.67818 -14.46489 -14.29631 -14.12484 -13.83766 -13.50368 -13.33851 -13.18846 -13.06253 -12.86236 -12.74552 -12.52596 -12.36625 -12.15479 -12.01052 -11.80610 -11.70664 -11.54293 -11.44130 -11.01758 -10.84245 -10.44156 -9.39031 -8.89447 -8.06843 -6.18157 1.37943 1.40543 1.52032 2.43103 2.72072 3.11813 3.18187 3.49986 3.59667 3.71087 3.87755 4.01071 4.15670 4.23972 4.29295 4.45674 4.50544 4.57925 4.58801 4.62238 4.66660 4.71544 4.76338 4.82144 4.89118 5.02413 5.06798 5.16543 5.24867 5.35620 5.37401 5.43814 5.63865 5.78050 5.90736 5.99787 6.02439 6.38478 6.55439 6.96635 7.05860 7.50947 8.96496 Molecular weight = 276.17amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.004406 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.179016 B = 6353.733581 C = 6967.319555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.228 3.772 4 H -0.029 1.029 5 C -0.510 4.510 6 H 0.045 0.955 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.685 5.685 14 C 0.097 3.903 15 C -0.093 4.093 16 C 0.052 3.948 17 N -0.542 5.542 18 C -0.004 4.004 19 C 0.263 3.737 20 F -0.221 7.221 21 F -0.215 7.215 22 C 0.070 3.930 23 C -0.136 4.136 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.260 0.740 30 H 0.327 0.673 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.158 0.842 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 16.152 -6.384 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.120 3.880 4 H -0.011 1.011 5 C -0.548 4.548 6 H 0.063 0.937 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.315 5.315 14 C -0.014 4.014 15 C -0.132 4.132 16 C -0.076 4.076 17 N -0.267 5.267 18 C -0.133 4.133 19 C 0.210 3.790 20 F -0.203 7.203 21 F -0.197 7.197 22 C -0.058 4.058 23 C -0.175 4.175 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.096 0.904 38 H 0.175 0.825 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.414 15.802 -6.813 19.155 hybrid contribution 1.093 -0.135 1.337 1.732 sum -7.321 15.667 -5.476 18.139 Atomic orbital electron populations 1.21740 0.96233 1.01067 1.00512 1.21563 0.94222 0.99098 1.00921 1.18875 0.93526 0.90382 0.85243 1.01133 1.21482 0.92785 1.35550 1.05025 0.93656 1.25640 1.02260 0.95388 0.95430 1.70005 1.36232 1.39229 1.10481 0.85591 0.81078 0.77732 0.77722 1.19735 1.20671 1.20565 1.60668 1.31023 1.04213 1.35625 1.21439 0.95967 0.88235 0.95775 1.21443 1.01729 0.93694 0.96308 1.22356 0.89543 0.95935 0.99813 1.61890 1.37255 1.08722 1.18839 1.23401 1.04129 0.88668 0.97057 1.22516 0.73062 0.98496 0.84953 1.92878 1.62932 1.96356 1.68096 1.92959 1.50204 1.84012 1.92508 1.21978 1.01247 0.93883 0.88713 1.22192 0.99016 0.96111 1.00197 0.92538 0.94314 0.92417 0.94897 0.91581 0.93119 0.85448 0.93683 0.91711 0.92139 0.95241 0.88722 0.85808 0.90381 0.82547 0.95216 0.88869 0.93347 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.57 71.98 0.69 -4.56 16 2 C -0.12 -5.75 5.39 30.59 0.17 -5.58 16 3 C 0.23 11.55 1.92 44.17 0.08 11.64 16 4 H -0.03 -1.61 6.92 -2.39 -0.02 -1.62 16 5 C -0.51 -28.84 8.26 25.60 0.21 -28.63 16 6 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 7 C 0.01 0.61 5.30 84.66 0.45 1.06 16 8 N -0.92 -53.27 11.30 21.45 0.24 -53.03 16 9 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.68 -29.44 6.03 -472.93 -2.85 -32.29 16 14 C 0.10 3.67 2.36 44.99 0.11 3.78 16 15 C -0.09 -3.05 5.70 30.65 0.17 -2.87 16 16 C 0.05 1.41 5.23 86.32 0.45 1.86 16 17 N -0.54 -13.17 4.39 -896.35 -3.94 -17.10 16 18 C 0.00 -0.06 5.39 86.30 0.47 0.40 16 19 C 0.26 4.04 5.59 71.98 0.40 4.44 16 20 F -0.22 -4.60 14.75 44.97 0.66 -3.94 16 21 F -0.22 -4.74 17.15 44.97 0.77 -3.97 16 22 C 0.07 1.81 5.42 86.33 0.47 2.28 16 23 C -0.14 -4.42 5.33 30.65 0.16 -4.26 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.06 1.95 6.54 -2.39 -0.02 1.93 16 27 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 3.60 6.01 -2.39 -0.01 3.58 16 29 H 0.26 14.32 8.31 -92.71 -0.77 13.54 16 30 H 0.33 12.79 6.23 -89.69 -0.56 12.24 16 31 H 0.04 2.01 7.51 -2.39 -0.02 1.99 16 32 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 2.47 5.53 -2.39 -0.01 2.45 16 36 H 0.12 1.41 7.76 -2.39 -0.02 1.39 16 37 H 0.08 1.10 7.97 -2.39 -0.02 1.08 16 38 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.09 1.99 7.92 -2.39 -0.02 1.97 16 41 H 0.05 1.76 7.20 -2.39 -0.02 1.74 16 42 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 Total: -1.00 -64.81 328.90 1.19 -63.62 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.44 Total: 20.37 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 3.83 Total: -20.45 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -6.54 Total: -102.42 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 1.43 Total: -7.91 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.81 1.19 -63.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.269 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds