Wall clock time and date at job start Mon Mar 30 2020 02:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.01544 * 2 1 4 4 C 1.50600 * 109.79477 * 121.10568 * 2 1 3 5 5 N 1.29720 * 128.69350 * 288.87660 * 4 2 1 6 6 N 1.28921 * 109.43317 * 179.63629 * 5 4 2 7 7 C 1.30827 * 109.74241 * 0.10558 * 6 5 4 8 8 C 1.50689 * 126.44458 * 180.15671 * 7 6 5 9 9 C 1.54266 * 110.03171 * 57.88377 * 8 7 6 10 10 C 1.54967 * 104.16247 * 217.13810 * 9 8 7 11 11 C 1.54893 * 102.77671 * 37.88386 * 10 9 8 12 12 C 1.53872 * 110.03478 * 300.66743 * 8 7 6 13 13 N 1.34797 * 107.11547 * 0.13547 * 7 6 5 14 14 C 1.46214 * 128.60399 * 179.52740 * 13 7 6 15 15 C 1.53334 * 109.18220 * 161.67217 * 14 13 7 16 16 N 1.47077 * 109.24907 * 45.62727 * 15 14 13 17 17 C 1.36941 * 120.94321 * 116.43054 * 16 15 14 18 18 H 1.08003 * 120.00387 * 340.61639 * 17 16 15 19 19 C 1.38812 * 119.99705 * 160.88308 * 17 16 15 20 20 N 1.31614 * 119.99952 * 339.61226 * 19 17 16 21 21 Si 1.86795 * 119.99770 * 159.60969 * 19 17 16 22 22 H 1.48501 * 109.47223 * 90.00139 * 21 19 17 23 23 H 1.48503 * 109.47127 * 209.99959 * 21 19 17 24 24 H 1.48493 * 109.47440 * 330.00322 * 21 19 17 25 25 H 1.09006 * 109.46625 * 181.24759 * 1 2 3 26 26 H 1.08999 * 109.47106 * 301.24309 * 1 2 3 27 27 H 1.08998 * 109.46975 * 61.24594 * 1 2 3 28 28 H 1.09001 * 110.02320 * 179.27062 * 8 7 6 29 29 H 1.09005 * 110.48906 * 335.78420 * 9 8 7 30 30 H 1.09004 * 110.48977 * 98.42752 * 9 8 7 31 31 H 1.09003 * 110.71876 * 279.57169 * 10 9 8 32 32 H 1.08999 * 110.92668 * 156.29322 * 10 9 8 33 33 H 1.08997 * 110.48729 * 203.40549 * 11 10 9 34 34 H 1.09004 * 110.48567 * 80.76488 * 11 10 9 35 35 H 1.08997 * 110.03471 * 238.56926 * 12 8 7 36 36 H 1.08998 * 110.03005 * 359.97438 * 12 8 7 37 37 H 1.08997 * 109.52176 * 41.75924 * 14 13 7 38 38 H 1.09000 * 109.56944 * 281.61573 * 14 13 7 39 39 H 1.08996 * 109.50467 * 285.69570 * 15 14 13 40 40 H 1.09000 * 109.54034 * 165.58435 * 15 14 13 41 41 H 0.97004 * 120.00012 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0400 -0.7321 1.2133 5 7 2.0064 -0.3633 2.4565 6 7 2.5412 -1.2787 3.1900 7 6 2.9405 -2.2712 2.4370 8 6 3.6121 -3.5363 2.9053 9 6 2.7118 -4.2672 3.9226 10 6 3.7061 -4.8513 4.9579 11 6 4.7716 -3.7334 5.0780 12 6 4.9214 -3.1974 3.6393 13 7 2.6377 -1.9497 1.1634 14 6 2.8851 -2.7189 -0.0552 15 6 1.9840 -2.1891 -1.1770 16 7 2.0336 -0.7192 -1.1855 17 6 2.5381 -0.0379 -2.2609 18 1 3.1803 -0.5429 -2.9673 19 6 2.2285 1.3034 -2.4401 20 7 1.1713 1.8193 -1.8499 21 14 3.3126 2.3760 -3.5187 22 1 2.8176 2.3310 -4.9181 23 1 3.2725 3.7757 -3.0243 24 1 4.7093 1.8741 -3.4714 25 1 -0.3633 -1.0275 0.0224 26 1 -0.3633 0.5330 0.8786 27 1 -0.3633 0.4944 -0.9009 28 1 3.8183 -4.1862 2.0548 29 1 2.0303 -3.5648 4.4027 30 1 2.1550 -5.0668 3.4340 31 1 4.1535 -5.7729 4.5855 32 1 3.2152 -5.0216 5.9160 33 1 5.7169 -4.1440 5.4326 34 1 4.4233 -2.9445 5.7447 35 1 5.7628 -3.6833 3.1455 36 1 5.0711 -2.1179 3.6564 37 1 2.6614 -3.7701 0.1259 38 1 3.9300 -2.6141 -0.3472 39 1 0.9589 -2.5178 -1.0062 40 1 2.3336 -2.5707 -2.1363 41 1 0.9548 2.7565 -1.9754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376505545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:22 Heat of formation + Delta-G solvation = 91.735542 kcal Electronic energy + Delta-G solvation = -22370.091862 eV Core-core repulsion = 19286.462885 eV Total energy + Delta-G solvation = -3083.628977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.61083 -38.04764 -36.97363 -34.23359 -31.97434 -30.90015 -30.18200 -28.72271 -27.96951 -27.21641 -24.46975 -22.96726 -22.08873 -21.92197 -20.68238 -19.28979 -18.63945 -16.91833 -16.56764 -15.94405 -15.67176 -15.19791 -14.85488 -14.04959 -13.83486 -13.74023 -13.36253 -13.12561 -12.82682 -12.22733 -11.83753 -11.61079 -11.51050 -11.33093 -11.19170 -11.14076 -11.11622 -10.93404 -10.81211 -10.76006 -10.65753 -10.57289 -10.26340 -10.12853 -9.86507 -9.61221 -9.42947 -8.82393 -8.17714 -7.15409 -5.99205 -3.39791 2.48348 3.10501 3.28981 3.38276 3.39413 3.53735 4.29860 4.39925 4.60648 4.62377 4.92780 5.01088 5.08398 5.21384 5.24473 5.30422 5.41366 5.49108 5.51753 5.54820 5.62691 5.65282 5.81670 5.86396 5.98516 6.08794 6.17329 6.19690 6.31840 6.34178 6.39562 6.49301 6.58758 6.76120 6.84002 6.88868 7.31390 7.51116 7.56826 7.75745 8.09384 8.92833 9.43828 9.56045 10.05459 11.08685 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030543 B = 0.004892 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.525161 B = 5721.847534 C = 5854.905323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H 0.122 0.878 4 C 0.194 3.806 5 N -0.311 5.311 6 N -0.303 5.303 7 C 0.156 3.844 8 C 0.002 3.998 9 C -0.113 4.113 10 C -0.122 4.122 11 C -0.120 4.120 12 C -0.112 4.112 13 N -0.461 5.461 14 C 0.084 3.916 15 C 0.130 3.870 16 N -0.590 5.590 17 C -0.265 4.265 18 H 0.076 0.924 19 C 0.008 3.992 20 N -0.895 5.895 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.280 1.280 25 H 0.018 0.982 26 H 0.040 0.960 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -12.918 6.903 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.140 0.860 4 C -0.075 4.075 5 N -0.150 5.150 6 N -0.143 5.143 7 C -0.112 4.112 8 C -0.019 4.019 9 C -0.151 4.151 10 C -0.160 4.160 11 C -0.158 4.158 12 C -0.150 4.150 13 N -0.151 5.151 14 C -0.042 4.042 15 C 0.002 3.998 16 N -0.312 5.312 17 C -0.393 4.393 18 H 0.094 0.906 19 C -0.191 4.191 20 N -0.538 5.538 21 Si 0.735 3.265 22 H -0.212 1.212 23 H -0.213 1.213 24 H -0.205 1.205 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.010 -11.884 8.061 14.910 hybrid contribution 0.830 -0.244 -1.752 1.954 sum 4.840 -12.128 6.309 14.502 Atomic orbital electron populations 1.22059 0.95251 0.98683 1.03227 1.19102 0.93047 0.95257 0.76122 0.86018 1.26320 0.97404 0.85651 0.98172 1.73992 1.19700 1.21506 0.99820 1.74271 1.14658 0.99040 1.26342 1.24379 1.05094 1.00074 0.81625 1.20081 0.94516 0.89004 0.98291 1.22436 0.97619 0.99200 0.95848 1.22485 0.96601 0.97916 0.98953 1.22327 0.98631 0.98151 0.96693 1.22147 0.95339 1.02137 0.95398 1.45908 1.44479 1.17199 1.07535 1.22697 1.02786 0.94626 0.84102 1.21188 0.96241 0.86850 0.95531 1.44360 1.72739 0.98846 1.15286 1.19139 1.23655 0.93276 1.03263 0.90646 1.24920 0.96643 0.98309 0.99204 1.69970 1.23497 1.13826 1.46555 0.86255 0.80446 0.80057 0.79755 1.21237 1.21252 1.20548 0.96280 0.94092 0.88197 0.90058 0.90204 0.91658 0.91644 0.91409 0.91810 0.91080 0.91621 0.90946 0.90213 0.90124 0.94431 0.89812 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.07 37.16 0.34 -2.67 16 2 C 0.27 6.53 2.42 -68.57 -0.17 6.36 16 3 H 0.12 3.31 6.24 -51.93 -0.32 2.98 16 4 C 0.19 4.41 7.14 -155.48 -1.11 3.30 16 5 N -0.31 -7.37 12.20 32.69 0.40 -6.97 16 6 N -0.30 -6.47 12.02 32.71 0.39 -6.08 16 7 C 0.16 2.85 6.28 -155.37 -0.98 1.87 16 8 C 0.00 0.03 3.34 -90.66 -0.30 -0.27 16 9 C -0.11 -1.33 6.36 -25.03 -0.16 -1.49 16 10 C -0.12 -1.16 6.91 -24.69 -0.17 -1.33 16 11 C -0.12 -1.25 6.83 -25.07 -0.17 -1.42 16 12 C -0.11 -1.37 6.45 -25.62 -0.17 -1.53 16 13 N -0.46 -8.97 3.11 -110.97 -0.35 -9.32 16 14 C 0.08 1.35 6.70 -4.02 -0.03 1.32 16 15 C 0.13 2.40 6.39 -3.55 -0.02 2.38 16 16 N -0.59 -13.73 2.69 -165.59 -0.45 -14.18 16 17 C -0.27 -6.69 9.68 -15.06 -0.15 -6.83 16 18 H 0.08 1.83 7.89 -52.48 -0.41 1.42 16 19 C 0.01 0.22 4.92 -17.43 -0.09 0.13 16 20 N -0.90 -23.84 9.22 55.49 0.51 -23.33 16 21 Si 0.91 20.59 29.60 -169.99 -5.03 15.55 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H 0.02 0.40 7.55 -51.93 -0.39 0.00 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.10 2.46 6.48 -51.93 -0.34 2.13 16 28 H 0.08 0.94 7.40 -51.93 -0.38 0.56 16 29 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.07 7.66 -51.93 -0.40 0.67 16 37 H 0.08 1.00 7.83 -51.93 -0.41 0.60 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.04 0.70 7.55 -51.93 -0.39 0.30 16 40 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 41 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -29.28 320.32 -9.23 -38.51 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.38 Total: 1.18 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -3.16 Total: -0.19 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.51 Total: -59.87 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.28 -9.23 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376505545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.242 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds