Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.01544 * 2 1 4 4 C 1.50600 * 109.79477 * 121.10568 * 2 1 3 5 5 N 1.29720 * 128.69350 * 288.87660 * 4 2 1 6 6 N 1.28921 * 109.43317 * 179.63629 * 5 4 2 7 7 C 1.30827 * 109.74241 * 0.10558 * 6 5 4 8 8 C 1.50689 * 126.44458 * 180.15671 * 7 6 5 9 9 C 1.54266 * 110.03171 * 57.88377 * 8 7 6 10 10 C 1.54967 * 104.16247 * 217.13810 * 9 8 7 11 11 C 1.54893 * 102.77671 * 37.88386 * 10 9 8 12 12 C 1.53872 * 110.03478 * 300.66743 * 8 7 6 13 13 N 1.34797 * 107.11547 * 0.13547 * 7 6 5 14 14 C 1.46214 * 128.60399 * 179.52740 * 13 7 6 15 15 C 1.53334 * 109.18220 * 161.67217 * 14 13 7 16 16 N 1.47077 * 109.24907 * 45.62727 * 15 14 13 17 17 C 1.36941 * 120.94321 * 116.43054 * 16 15 14 18 18 H 1.08003 * 120.00387 * 340.61639 * 17 16 15 19 19 C 1.38812 * 119.99705 * 160.88308 * 17 16 15 20 20 N 1.31614 * 119.99952 * 339.61226 * 19 17 16 21 21 Si 1.86795 * 119.99770 * 159.60969 * 19 17 16 22 22 H 1.48501 * 109.47223 * 90.00139 * 21 19 17 23 23 H 1.48503 * 109.47127 * 209.99959 * 21 19 17 24 24 H 1.48493 * 109.47440 * 330.00322 * 21 19 17 25 25 H 1.09006 * 109.46625 * 181.24759 * 1 2 3 26 26 H 1.08999 * 109.47106 * 301.24309 * 1 2 3 27 27 H 1.08998 * 109.46975 * 61.24594 * 1 2 3 28 28 H 1.09001 * 110.02320 * 179.27062 * 8 7 6 29 29 H 1.09005 * 110.48906 * 335.78420 * 9 8 7 30 30 H 1.09004 * 110.48977 * 98.42752 * 9 8 7 31 31 H 1.09003 * 110.71876 * 279.57169 * 10 9 8 32 32 H 1.08999 * 110.92668 * 156.29322 * 10 9 8 33 33 H 1.08997 * 110.48729 * 203.40549 * 11 10 9 34 34 H 1.09004 * 110.48567 * 80.76488 * 11 10 9 35 35 H 1.08997 * 110.03471 * 238.56926 * 12 8 7 36 36 H 1.08998 * 110.03005 * 359.97438 * 12 8 7 37 37 H 1.08997 * 109.52176 * 41.75924 * 14 13 7 38 38 H 1.09000 * 109.56944 * 281.61573 * 14 13 7 39 39 H 1.08996 * 109.50467 * 285.69570 * 15 14 13 40 40 H 1.09000 * 109.54034 * 165.58435 * 15 14 13 41 41 H 0.97004 * 120.00012 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0400 -0.7321 1.2133 5 7 2.0064 -0.3633 2.4565 6 7 2.5412 -1.2787 3.1900 7 6 2.9405 -2.2712 2.4370 8 6 3.6121 -3.5363 2.9053 9 6 2.7118 -4.2672 3.9226 10 6 3.7061 -4.8513 4.9579 11 6 4.7716 -3.7334 5.0780 12 6 4.9214 -3.1974 3.6393 13 7 2.6377 -1.9497 1.1634 14 6 2.8851 -2.7189 -0.0552 15 6 1.9840 -2.1891 -1.1770 16 7 2.0336 -0.7192 -1.1855 17 6 2.5381 -0.0379 -2.2609 18 1 3.1803 -0.5429 -2.9673 19 6 2.2285 1.3034 -2.4401 20 7 1.1713 1.8193 -1.8499 21 14 3.3126 2.3760 -3.5187 22 1 2.8176 2.3310 -4.9181 23 1 3.2725 3.7757 -3.0243 24 1 4.7093 1.8741 -3.4714 25 1 -0.3633 -1.0275 0.0224 26 1 -0.3633 0.5330 0.8786 27 1 -0.3633 0.4944 -0.9009 28 1 3.8183 -4.1862 2.0548 29 1 2.0303 -3.5648 4.4027 30 1 2.1550 -5.0668 3.4340 31 1 4.1535 -5.7729 4.5855 32 1 3.2152 -5.0216 5.9160 33 1 5.7169 -4.1440 5.4326 34 1 4.4233 -2.9445 5.7447 35 1 5.7628 -3.6833 3.1455 36 1 5.0711 -2.1179 3.6564 37 1 2.6614 -3.7701 0.1259 38 1 3.9300 -2.6141 -0.3472 39 1 0.9589 -2.5178 -1.0062 40 1 2.3336 -2.5707 -2.1363 41 1 0.9548 2.7565 -1.9754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376505545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = 76.292734 kcal Electronic energy + Delta-G solvation = -22370.761513 eV Core-core repulsion = 19286.462885 eV Total energy + Delta-G solvation = -3084.298627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.18647 -39.07367 -38.58083 -35.84965 -33.74100 -32.58319 -31.54403 -29.61006 -29.58393 -28.60641 -26.26885 -24.60644 -23.79271 -23.22115 -21.49981 -20.61348 -20.22306 -18.58449 -18.11814 -17.41971 -16.99516 -16.40722 -16.23419 -15.74720 -15.54775 -15.03603 -14.62731 -14.40163 -14.23488 -13.78120 -13.45476 -13.20723 -12.97344 -12.82287 -12.68320 -12.47952 -12.44033 -12.27251 -12.08480 -11.99158 -11.96216 -11.89381 -11.73626 -11.67558 -11.41961 -11.18355 -10.90581 -10.68989 -9.83794 -9.00368 -7.93038 -5.34198 0.95485 1.47000 1.51803 1.58117 1.65996 1.89645 2.46043 3.10584 3.26718 3.34965 3.61833 3.65950 3.72440 3.78332 4.09519 4.19956 4.21234 4.36737 4.49716 4.57073 4.59407 4.62491 4.68726 4.76392 4.80427 4.84645 4.95224 4.98783 5.04374 5.09765 5.12038 5.20751 5.29256 5.29480 5.40134 5.43799 5.53959 5.57381 5.80676 6.10055 6.21612 7.00549 7.67254 7.84042 8.18049 9.13591 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030543 B = 0.004892 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.525161 B = 5721.847534 C = 5854.905323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.281 3.719 3 H 0.080 0.920 4 C 0.173 3.827 5 N -0.344 5.344 6 N -0.337 5.337 7 C 0.179 3.821 8 C -0.001 4.001 9 C -0.112 4.112 10 C -0.112 4.112 11 C -0.120 4.120 12 C -0.111 4.111 13 N -0.462 5.462 14 C 0.084 3.916 15 C 0.125 3.875 16 N -0.605 5.605 17 C -0.269 4.269 18 H 0.086 0.914 19 C -0.042 4.042 20 N -0.920 5.920 21 Si 0.963 3.037 22 H -0.281 1.281 23 H -0.299 1.299 24 H -0.275 1.275 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.037 0.963 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.105 0.895 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.958 -16.489 6.799 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.171 3.829 3 H 0.098 0.902 4 C -0.098 4.098 5 N -0.183 5.183 6 N -0.177 5.177 7 C -0.089 4.089 8 C -0.022 4.022 9 C -0.151 4.151 10 C -0.149 4.149 11 C -0.157 4.157 12 C -0.150 4.150 13 N -0.152 5.152 14 C -0.039 4.039 15 C -0.001 4.001 16 N -0.328 5.328 17 C -0.398 4.398 18 H 0.103 0.897 19 C -0.238 4.238 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.208 1.208 23 H -0.225 1.225 24 H -0.200 1.200 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.130 0.870 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.146 0.854 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.656 -15.497 7.951 18.313 hybrid contribution 0.351 0.787 -1.676 1.884 sum 6.007 -14.709 6.275 17.083 Atomic orbital electron populations 1.21841 0.95086 0.98803 1.01855 1.18657 0.93125 0.93687 0.77400 0.90243 1.25921 0.99133 0.87280 0.97417 1.73897 1.20709 1.23013 1.00657 1.74200 1.16390 1.00042 1.27055 1.25328 1.02431 1.00455 0.80735 1.20502 0.94791 0.87033 0.99890 1.22439 0.97622 0.98943 0.96070 1.22475 0.95498 0.98213 0.98735 1.22333 1.00177 0.98075 0.95151 1.22164 0.95625 1.00326 0.96837 1.46123 1.43778 1.16370 1.08916 1.22882 1.02741 0.96419 0.81895 1.21426 0.97091 0.83907 0.97707 1.44490 1.72921 1.00946 1.14476 1.19490 1.23211 0.93657 1.03410 0.89655 1.25596 0.97692 0.99591 1.00920 1.70115 1.24824 1.13372 1.48179 0.85361 0.79189 0.77917 0.78425 1.20768 1.22536 1.20023 0.95234 0.94461 0.90365 0.86954 0.93246 0.89685 0.89045 0.90610 0.89502 0.93056 0.89007 0.94353 0.85362 0.89005 0.94302 0.87714 0.93818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 9.07 71.98 0.65 -4.80 16 2 C 0.28 13.78 2.42 44.02 0.11 13.89 16 3 H 0.08 4.57 6.24 -2.39 -0.01 4.55 16 4 C 0.17 7.98 7.14 138.10 0.99 8.96 16 5 N -0.34 -16.76 12.20 -50.49 -0.62 -17.38 16 6 N -0.34 -14.60 12.02 -50.42 -0.61 -15.21 16 7 C 0.18 6.27 6.28 138.11 0.87 7.14 16 8 C 0.00 -0.03 3.34 -10.82 -0.04 -0.07 16 9 C -0.11 -2.30 6.36 31.70 0.20 -2.10 16 10 C -0.11 -1.68 6.91 31.91 0.22 -1.46 16 11 C -0.12 -2.15 6.83 31.67 0.22 -1.93 16 12 C -0.11 -2.41 6.45 31.32 0.20 -2.20 16 13 N -0.46 -17.23 3.11 -505.00 -1.57 -18.80 16 14 C 0.08 2.41 6.70 86.55 0.58 2.99 16 15 C 0.12 4.31 6.39 86.38 0.55 4.86 16 16 N -0.61 -28.00 2.69 -677.82 -1.82 -29.82 16 17 C -0.27 -13.50 9.68 84.03 0.81 -12.69 16 18 H 0.09 4.03 7.89 -2.91 -0.02 4.00 16 19 C -0.04 -2.18 4.92 84.86 0.42 -1.76 16 20 N -0.92 -50.86 9.22 21.65 0.20 -50.66 16 21 Si 0.96 42.94 29.60 68.60 2.03 44.97 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H 0.03 1.27 7.55 -2.38 -0.02 1.25 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 4.01 6.48 -2.39 -0.02 4.00 16 28 H 0.11 1.97 7.40 -2.39 -0.02 1.95 16 29 H 0.05 1.33 7.69 -2.38 -0.02 1.31 16 30 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.09 7.66 -2.39 -0.02 1.08 16 37 H 0.13 2.48 7.83 -2.39 -0.02 2.46 16 38 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.04 1.35 7.55 -2.39 -0.02 1.33 16 40 H 0.10 3.16 7.93 -2.39 -0.02 3.14 16 41 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -66.93 320.32 4.41 -62.52 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.01 Total: 13.54 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 5.78 Total: 10.84 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -4.42 Total: -131.87 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -66.93 4.41 -62.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376505545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.814 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds