Wall clock time and date at job start Mon Mar 30 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38626 * 120.71856 * 2 1 4 4 N 1.32258 * 119.19652 * 179.70975 * 3 2 1 5 5 C 1.32515 * 120.73759 * 0.54109 * 4 3 2 6 6 N 1.38402 * 119.21909 * 179.71782 * 5 4 3 7 7 C 1.46507 * 119.99824 * 359.73722 * 6 5 4 8 8 C 1.53045 * 109.45819 * 205.00073 * 7 6 5 9 9 C 1.53186 * 109.31313 * 178.61343 * 8 7 6 10 10 N 1.46927 * 108.77731 * 54.63323 * 9 8 7 11 11 C 1.36932 * 120.63177 * 126.41349 * 10 9 8 12 12 H 1.08004 * 120.00038 * 207.66728 * 11 10 9 13 13 C 1.38814 * 119.99982 * 27.66313 * 11 10 9 14 14 N 1.31612 * 120.00200 * 17.37133 * 13 11 10 15 15 Si 1.86798 * 119.99944 * 197.36766 * 13 11 10 16 16 H 1.48495 * 109.47316 * 89.99828 * 15 13 11 17 17 H 1.48500 * 109.47279 * 210.00580 * 15 13 11 18 18 H 1.48504 * 109.47339 * 329.99883 * 15 13 11 19 19 C 1.46931 * 118.73618 * 306.39136 * 10 9 8 20 20 C 1.53033 * 109.45986 * 84.93150 * 7 6 5 21 21 N 1.32476 * 121.56226 * 359.44598 * 5 4 3 22 22 C 1.32291 * 120.74233 * 0.27363 * 21 5 4 23 23 C 1.50701 * 120.40053 * 180.02562 * 22 21 5 24 24 H 1.09006 * 109.46847 * 270.02069 * 1 2 3 25 25 H 1.08997 * 109.47205 * 30.02008 * 1 2 3 26 26 H 1.08995 * 109.46661 * 150.02411 * 1 2 3 27 27 H 1.08007 * 120.40323 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00645 * 179.73424 * 6 5 4 29 29 H 1.09001 * 109.44826 * 324.96226 * 7 6 5 30 30 H 1.09002 * 109.49510 * 298.56645 * 8 7 6 31 31 H 1.09002 * 109.49762 * 58.65615 * 8 7 6 32 32 H 1.08996 * 109.58858 * 174.41929 * 9 8 7 33 33 H 1.09000 * 109.58501 * 294.84718 * 9 8 7 34 34 H 0.96996 * 120.00390 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.59021 * 293.82309 * 19 10 9 36 36 H 1.08998 * 109.69942 * 173.46367 * 19 10 9 37 37 H 1.08999 * 109.49679 * 301.33365 * 20 7 6 38 38 H 1.08998 * 109.50318 * 61.40201 * 20 7 6 39 39 H 1.09006 * 109.46911 * 89.99509 * 23 22 21 40 40 H 1.08994 * 109.47561 * 209.99797 * 23 22 21 41 41 H 1.08998 * 109.47250 * 330.00329 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2152 1.1917 0.0000 4 7 3.5373 1.1566 0.0058 5 6 4.1842 0.0001 0.0009 6 7 5.5682 0.0000 0.0013 7 6 6.3007 1.2688 0.0014 8 6 7.6884 1.0563 -0.6080 9 6 8.4384 2.3917 -0.6381 10 7 8.4550 2.9555 0.7186 11 6 9.6356 3.3229 1.3070 12 1 9.7310 3.3062 2.3827 13 6 10.7098 3.7168 0.5210 14 7 10.5146 4.0672 -0.7325 15 14 12.4326 3.7496 1.2424 16 1 13.0823 2.4310 1.0326 17 1 13.2303 4.8071 0.5711 18 1 12.3547 4.0371 2.6973 19 6 7.1807 3.1179 1.4317 20 6 6.4448 1.7743 1.4386 21 7 3.5375 -1.1561 0.0009 22 6 2.2150 -1.1913 0.0005 23 6 1.4872 -2.5109 0.0011 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3632 -0.8902 -0.5134 27 1 1.6936 2.1375 0.0004 28 1 6.0532 -0.8400 0.0016 29 1 5.7536 2.0038 -0.5890 30 1 8.2452 0.3399 -0.0040 31 1 7.5851 0.6740 -1.6236 32 1 9.4609 2.2289 -0.9786 33 1 7.9313 3.0804 -1.3138 34 1 11.2651 4.3427 -1.2817 35 1 6.5710 3.8658 0.9248 36 1 7.3712 3.4355 2.4569 37 1 5.4564 1.9031 1.8797 38 1 7.0128 1.0509 2.0236 39 1 1.3115 -2.8284 1.0290 40 1 0.5326 -2.3996 -0.5131 41 1 2.0912 -3.2592 -0.5120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395311589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:59 Heat of formation + Delta-G solvation = 66.961298 kcal Electronic energy + Delta-G solvation = -21308.184471 eV Core-core repulsion = 18223.481202 eV Total energy + Delta-G solvation = -3084.703269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94699 -38.03575 -35.60962 -34.08129 -33.37556 -31.78351 -30.08993 -29.46168 -28.90738 -26.44165 -24.78905 -23.29881 -22.39028 -22.06547 -20.94541 -19.35964 -17.98009 -17.05531 -16.67699 -15.35676 -15.01865 -14.73828 -14.54125 -14.12825 -13.84066 -13.61956 -13.48068 -13.38401 -13.08940 -12.95710 -12.68520 -12.56560 -12.29572 -12.02618 -11.44981 -11.11240 -10.96133 -10.72921 -10.69040 -10.62861 -10.41871 -10.28510 -10.07385 -9.84190 -9.54235 -9.46482 -8.92099 -8.46945 -7.72534 -6.68412 -5.78648 -3.20318 1.25650 1.29707 3.11009 3.38853 3.45679 3.46881 3.97940 4.23187 4.50549 4.52917 4.80373 4.87085 4.99642 5.26501 5.34728 5.35902 5.41436 5.48733 5.50989 5.55890 5.62812 5.72019 5.79361 5.92067 6.00464 6.10356 6.30317 6.32788 6.53361 6.56832 6.60404 6.71557 6.81995 7.00551 7.09047 7.28909 7.37955 7.60726 7.73252 7.80994 8.45355 8.54157 9.21643 9.85032 10.41860 11.30286 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.046991 B = 0.003450 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.718329 B = 8113.881914 C = 8289.914926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.274 4.274 3 C 0.195 3.805 4 N -0.563 5.563 5 C 0.568 3.432 6 N -0.689 5.689 7 C 0.166 3.834 8 C -0.148 4.148 9 C 0.176 3.824 10 N -0.593 5.593 11 C -0.252 4.252 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.903 3.097 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.149 3.851 20 C -0.137 4.137 21 N -0.578 5.578 22 C 0.215 3.785 23 C -0.107 4.107 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.162 0.838 28 H 0.408 0.592 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.021 0.979 34 H 0.254 0.746 35 H 0.021 0.979 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.705 -10.137 0.253 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.282 4.282 3 C 0.027 3.973 4 N -0.285 5.285 5 C 0.212 3.788 6 N -0.323 5.323 7 C 0.063 3.937 8 C -0.188 4.188 9 C 0.049 3.951 10 N -0.316 5.316 11 C -0.381 4.381 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.733 3.267 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.204 1.204 19 C 0.022 3.978 20 C -0.178 4.178 21 N -0.301 5.301 22 C 0.067 3.933 23 C -0.164 4.164 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.179 0.821 28 H 0.244 0.756 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.392 -9.865 0.147 19.996 hybrid contribution 0.239 -0.271 0.328 0.488 sum -17.154 -10.136 0.475 19.930 Atomic orbital electron populations 1.20491 0.89965 1.02537 1.01889 1.21018 0.98365 0.94817 1.14036 1.22835 0.88585 0.97783 0.88126 1.68013 1.09990 1.28397 1.22097 1.19403 0.87500 0.84316 0.87623 1.44754 0.99903 1.10440 1.77224 1.21049 0.91942 0.83397 0.97347 1.22570 0.94515 1.02621 0.99105 1.20737 1.00008 0.88041 0.86270 1.44102 1.01384 1.71542 1.14537 1.19211 0.88869 1.38563 0.91500 0.91617 1.25038 0.99099 0.98943 0.96612 1.70023 1.29993 1.47191 1.07566 0.86280 0.84665 0.77286 0.78488 1.21474 1.21776 1.20447 1.20860 0.87742 0.92645 0.96528 1.22391 0.99592 0.99951 0.95856 1.67728 1.09777 1.28918 1.23701 1.21173 0.88416 0.95349 0.88411 1.20796 0.99610 0.92658 1.03351 0.91749 0.91766 0.91581 0.82057 0.75568 0.89732 0.92189 0.92755 0.88981 0.96074 0.93609 0.96129 0.92683 0.92854 0.92588 0.89950 0.90039 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 9.67 36.01 0.35 -0.30 16 2 C -0.27 -3.04 5.91 -104.35 -0.62 -3.66 16 3 C 0.20 2.47 11.00 -17.23 -0.19 2.28 16 4 N -0.56 -9.07 9.21 -13.93 -0.13 -9.20 16 5 C 0.57 9.36 8.40 -322.81 -2.71 6.64 16 6 N -0.69 -11.22 5.22 -55.75 -0.29 -11.51 16 7 C 0.17 3.00 2.41 -67.89 -0.16 2.84 16 8 C -0.15 -2.83 5.55 -26.61 -0.15 -2.98 16 9 C 0.18 4.19 5.31 -3.71 -0.02 4.17 16 10 N -0.59 -14.96 2.99 -172.32 -0.52 -15.48 16 11 C -0.25 -6.94 9.59 -15.06 -0.14 -7.09 16 12 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 13 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 14 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 15 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.15 3.23 6.51 -3.70 -0.02 3.21 16 20 C -0.14 -2.58 5.66 -26.61 -0.15 -2.73 16 21 N -0.58 -8.79 10.40 -10.16 -0.11 -8.90 16 22 C 0.22 2.65 6.82 -82.27 -0.56 2.09 16 23 C -0.11 -0.88 9.83 36.01 0.35 -0.52 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 26 H 0.07 0.38 6.07 -51.93 -0.32 0.07 16 27 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 28 H 0.41 6.10 8.72 -40.82 -0.36 5.75 16 29 H 0.08 1.65 7.51 -51.93 -0.39 1.26 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 1.17 7.94 -51.93 -0.41 0.76 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.48 6.07 -51.93 -0.32 0.17 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -31.19 329.47 -10.90 -42.09 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.30 Total: 2.97 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -4.11 Total: 3.91 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -0.42 Total: -70.64 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.19 -10.90 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395311589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.053 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds