Wall clock time and date at job start Mon Mar 30 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38626 * 120.71856 * 2 1 4 4 N 1.32258 * 119.19652 * 179.70975 * 3 2 1 5 5 C 1.32515 * 120.73759 * 0.54109 * 4 3 2 6 6 N 1.38402 * 119.21909 * 179.71782 * 5 4 3 7 7 C 1.46507 * 119.99824 * 359.73722 * 6 5 4 8 8 C 1.53045 * 109.45819 * 205.00073 * 7 6 5 9 9 C 1.53186 * 109.31313 * 178.61343 * 8 7 6 10 10 N 1.46927 * 108.77731 * 54.63323 * 9 8 7 11 11 C 1.36932 * 120.63177 * 126.41349 * 10 9 8 12 12 H 1.08004 * 120.00038 * 207.66728 * 11 10 9 13 13 C 1.38814 * 119.99982 * 27.66313 * 11 10 9 14 14 N 1.31612 * 120.00200 * 17.37133 * 13 11 10 15 15 Si 1.86798 * 119.99944 * 197.36766 * 13 11 10 16 16 H 1.48495 * 109.47316 * 89.99828 * 15 13 11 17 17 H 1.48500 * 109.47279 * 210.00580 * 15 13 11 18 18 H 1.48504 * 109.47339 * 329.99883 * 15 13 11 19 19 C 1.46931 * 118.73618 * 306.39136 * 10 9 8 20 20 C 1.53033 * 109.45986 * 84.93150 * 7 6 5 21 21 N 1.32476 * 121.56226 * 359.44598 * 5 4 3 22 22 C 1.32291 * 120.74233 * 0.27363 * 21 5 4 23 23 C 1.50701 * 120.40053 * 180.02562 * 22 21 5 24 24 H 1.09006 * 109.46847 * 270.02069 * 1 2 3 25 25 H 1.08997 * 109.47205 * 30.02008 * 1 2 3 26 26 H 1.08995 * 109.46661 * 150.02411 * 1 2 3 27 27 H 1.08007 * 120.40323 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00645 * 179.73424 * 6 5 4 29 29 H 1.09001 * 109.44826 * 324.96226 * 7 6 5 30 30 H 1.09002 * 109.49510 * 298.56645 * 8 7 6 31 31 H 1.09002 * 109.49762 * 58.65615 * 8 7 6 32 32 H 1.08996 * 109.58858 * 174.41929 * 9 8 7 33 33 H 1.09000 * 109.58501 * 294.84718 * 9 8 7 34 34 H 0.96996 * 120.00390 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.59021 * 293.82309 * 19 10 9 36 36 H 1.08998 * 109.69942 * 173.46367 * 19 10 9 37 37 H 1.08999 * 109.49679 * 301.33365 * 20 7 6 38 38 H 1.08998 * 109.50318 * 61.40201 * 20 7 6 39 39 H 1.09006 * 109.46911 * 89.99509 * 23 22 21 40 40 H 1.08994 * 109.47561 * 209.99797 * 23 22 21 41 41 H 1.08998 * 109.47250 * 330.00329 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2152 1.1917 0.0000 4 7 3.5373 1.1566 0.0058 5 6 4.1842 0.0001 0.0009 6 7 5.5682 0.0000 0.0013 7 6 6.3007 1.2688 0.0014 8 6 7.6884 1.0563 -0.6080 9 6 8.4384 2.3917 -0.6381 10 7 8.4550 2.9555 0.7186 11 6 9.6356 3.3229 1.3070 12 1 9.7310 3.3062 2.3827 13 6 10.7098 3.7168 0.5210 14 7 10.5146 4.0672 -0.7325 15 14 12.4326 3.7496 1.2424 16 1 13.0823 2.4310 1.0326 17 1 13.2303 4.8071 0.5711 18 1 12.3547 4.0371 2.6973 19 6 7.1807 3.1179 1.4317 20 6 6.4448 1.7743 1.4386 21 7 3.5375 -1.1561 0.0009 22 6 2.2150 -1.1913 0.0005 23 6 1.4872 -2.5109 0.0011 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3632 -0.8902 -0.5134 27 1 1.6936 2.1375 0.0004 28 1 6.0532 -0.8400 0.0016 29 1 5.7536 2.0038 -0.5890 30 1 8.2452 0.3399 -0.0040 31 1 7.5851 0.6740 -1.6236 32 1 9.4609 2.2289 -0.9786 33 1 7.9313 3.0804 -1.3138 34 1 11.2651 4.3427 -1.2817 35 1 6.5710 3.8658 0.9248 36 1 7.3712 3.4355 2.4569 37 1 5.4564 1.9031 1.8797 38 1 7.0128 1.0509 2.0236 39 1 1.3115 -2.8284 1.0290 40 1 0.5326 -2.3996 -0.5131 41 1 2.0912 -3.2592 -0.5120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395311589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:58 Heat of formation + Delta-G solvation = 49.604023 kcal Electronic energy + Delta-G solvation = -21308.937139 eV Core-core repulsion = 18223.481202 eV Total energy + Delta-G solvation = -3085.455937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97596 -39.61326 -37.00899 -35.16807 -34.71847 -33.39533 -31.75284 -31.04488 -29.81956 -27.53968 -26.50008 -24.29632 -23.97021 -23.64546 -22.21394 -20.99693 -19.27660 -18.52115 -18.14655 -16.89611 -16.37375 -16.20290 -15.55210 -15.50289 -15.36895 -15.00335 -14.84943 -14.66927 -14.28609 -13.98659 -13.90249 -13.65251 -13.34855 -13.20610 -13.01918 -12.61726 -12.60694 -12.52054 -12.27709 -12.03525 -11.90359 -11.76779 -11.63371 -11.46574 -11.29918 -10.77998 -10.54655 -9.96788 -8.84894 -8.72693 -7.88890 -5.33979 0.28253 0.29352 1.47551 1.48894 1.57865 1.92920 2.51068 2.94368 3.26536 3.30112 3.61384 3.70068 3.80612 3.89988 4.05556 4.13181 4.23699 4.35400 4.44066 4.63507 4.66009 4.70983 4.76159 4.81214 4.85446 4.95938 4.99654 5.05987 5.13696 5.13960 5.21380 5.25253 5.29471 5.45523 5.61522 5.63924 5.69325 5.94105 6.21482 6.37719 6.58563 7.13156 7.45219 7.82903 8.35685 9.18293 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.046991 B = 0.003450 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.718329 B = 8113.881914 C = 8289.914926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.259 4.259 3 C 0.177 3.823 4 N -0.593 5.593 5 C 0.547 3.453 6 N -0.692 5.692 7 C 0.185 3.815 8 C -0.132 4.132 9 C 0.183 3.817 10 N -0.610 5.610 11 C -0.265 4.265 12 H 0.067 0.933 13 C -0.049 4.049 14 N -0.934 5.934 15 Si 0.969 3.031 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.269 1.269 19 C 0.148 3.852 20 C -0.120 4.120 21 N -0.594 5.594 22 C 0.196 3.804 23 C -0.103 4.103 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.189 0.811 28 H 0.413 0.587 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.062 0.938 33 H -0.001 1.001 34 H 0.251 0.749 35 H 0.015 0.985 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.882 -11.504 0.914 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.267 4.267 3 C 0.010 3.990 4 N -0.316 5.316 5 C 0.190 3.810 6 N -0.328 5.328 7 C 0.080 3.920 8 C -0.172 4.172 9 C 0.057 3.943 10 N -0.333 5.333 11 C -0.395 4.395 12 H 0.084 0.916 13 C -0.244 4.244 14 N -0.580 5.580 15 Si 0.797 3.203 16 H -0.211 1.211 17 H -0.221 1.221 18 H -0.194 1.194 19 C 0.022 3.978 20 C -0.160 4.160 21 N -0.318 5.318 22 C 0.048 3.952 23 C -0.160 4.160 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.205 0.795 28 H 0.250 0.750 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.017 0.983 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.649 -11.257 0.823 22.660 hybrid contribution 0.717 0.159 0.122 0.744 sum -18.933 -11.098 0.945 21.966 Atomic orbital electron populations 1.20608 0.86715 1.04169 1.03196 1.21486 1.00542 0.93730 1.10909 1.23418 0.87802 0.99762 0.88001 1.67985 1.11820 1.28675 1.23167 1.19494 0.87404 0.85055 0.89021 1.44386 1.00234 1.09560 1.78625 1.20590 0.91082 0.84105 0.96211 1.22296 0.94692 0.99744 1.00423 1.20520 0.98646 0.89808 0.85375 1.44349 1.02027 1.71959 1.14987 1.19523 0.90026 1.38171 0.91778 0.91563 1.25795 1.02590 0.99020 0.97035 1.70175 1.30711 1.48330 1.08786 0.85248 0.79992 0.77001 0.78085 1.21105 1.22108 1.19413 1.20941 0.86595 0.94231 0.96019 1.22165 0.99280 0.98007 0.96562 1.67753 1.11387 1.28460 1.24199 1.21971 0.87768 0.97648 0.87776 1.20918 1.00178 0.90341 1.04526 0.90391 0.90425 0.89744 0.79464 0.75008 0.91314 0.91913 0.91051 0.91939 0.98268 0.93984 0.96727 0.92564 0.92079 0.92808 0.88592 0.87296 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.67 71.24 0.69 -0.21 16 2 C -0.26 -5.06 5.91 -19.69 -0.12 -5.17 16 3 C 0.18 4.17 11.00 84.72 0.93 5.11 16 4 N -0.59 -18.78 9.21 -197.98 -1.82 -20.60 16 5 C 0.55 17.75 8.40 261.49 2.20 19.95 16 6 N -0.69 -22.36 5.22 -330.30 -1.72 -24.08 16 7 C 0.19 6.70 2.41 45.02 0.11 6.81 16 8 C -0.13 -5.08 5.55 30.67 0.17 -4.91 16 9 C 0.18 8.98 5.31 86.36 0.46 9.44 16 10 N -0.61 -31.44 2.99 -699.09 -2.09 -33.53 16 11 C -0.26 -14.82 9.59 84.03 0.81 -14.01 16 12 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 13 C -0.05 -2.75 4.91 84.86 0.42 -2.34 16 14 N -0.93 -55.60 11.19 21.65 0.24 -55.36 16 15 Si 0.97 45.19 29.59 68.60 2.03 47.22 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 17 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 C 0.15 6.51 6.51 86.36 0.56 7.07 16 20 C -0.12 -4.48 5.66 30.67 0.17 -4.31 16 21 N -0.59 -17.47 10.40 -186.05 -1.93 -19.41 16 22 C 0.20 4.39 6.82 42.57 0.29 4.68 16 23 C -0.10 -1.37 9.83 71.24 0.70 -0.66 16 24 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 26 H 0.08 0.58 6.07 -2.39 -0.01 0.57 16 27 H 0.19 3.16 8.06 -2.91 -0.02 3.13 16 28 H 0.41 12.20 8.72 -92.71 -0.81 11.39 16 29 H 0.07 2.73 7.51 -2.39 -0.02 2.71 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.06 3.43 6.04 -2.39 -0.01 3.42 16 33 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 2.41 7.94 -2.39 -0.02 2.39 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.11 0.83 6.07 -2.39 -0.01 0.81 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -68.70 329.47 2.31 -66.40 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.22 Total: 17.93 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 7.39 Total: 21.44 kcal Atomic # 7 Polarization: -145.64 SS G_CDS: -7.33 Total: -152.98 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.70 2.31 -66.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395311589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.000 kcal (2) G-P(sol) polarization free energy of solvation -68.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds