Wall clock time and date at job start Mon Mar 30 2020 01:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35678 * 116.99488 * 2 1 4 4 N 1.32270 * 119.68679 * 359.97438 * 3 2 1 5 5 C 1.31938 * 121.64927 * 180.02562 * 4 3 2 6 6 C 1.38096 * 120.83141 * 0.02562 * 5 4 3 7 7 C 1.38782 * 119.28629 * 359.97438 * 6 5 4 8 8 C 1.38429 * 118.48685 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.43997 * 180.27869 * 8 7 6 10 10 N 1.46901 * 109.46553 * 259.71558 * 9 8 7 11 11 C 1.46841 * 111.00066 * 66.05133 * 10 9 8 12 12 C 1.53040 * 109.52688 * 185.83618 * 11 10 9 13 13 C 1.53122 * 109.27704 * 300.82077 * 12 11 10 14 14 C 1.53116 * 109.16162 * 57.65197 * 13 12 11 15 15 H 1.09007 * 109.50193 * 62.32099 * 14 13 12 16 16 C 1.50691 * 109.50360 * 182.40245 * 14 13 12 17 17 H 1.08005 * 120.00255 * 119.99924 * 16 14 13 18 18 C 1.37878 * 120.00178 * 300.00211 * 16 14 13 19 19 N 1.31517 * 119.99776 * 180.02562 * 18 16 14 20 20 Si 1.86791 * 120.00021 * 359.97438 * 18 16 14 21 21 H 1.48505 * 109.47295 * 90.00211 * 20 18 16 22 22 H 1.48497 * 109.47446 * 210.00395 * 20 18 16 23 23 H 1.48501 * 109.47362 * 330.00125 * 20 18 16 24 24 C 1.46854 * 110.99923 * 190.25870 * 10 9 8 25 25 H 1.09004 * 109.47186 * 60.00278 * 1 2 3 26 26 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47443 * 300.00017 * 1 2 3 28 28 H 1.07992 * 119.58737 * 180.02562 * 5 4 3 29 29 H 1.07994 * 120.35819 * 179.97438 * 6 5 4 30 30 H 1.08004 * 120.75794 * 180.02562 * 7 6 5 31 31 H 1.08997 * 109.47375 * 19.71719 * 9 8 7 32 32 H 1.09002 * 109.46974 * 139.72313 * 9 8 7 33 33 H 1.08997 * 109.46525 * 305.85506 * 11 10 9 34 34 H 1.09000 * 109.46857 * 65.81924 * 11 10 9 35 35 H 1.08998 * 109.50161 * 60.76035 * 12 11 10 36 36 H 1.08998 * 109.50883 * 180.87805 * 12 11 10 37 37 H 1.08997 * 109.52139 * 177.55743 * 13 12 11 38 38 H 1.08991 * 109.52105 * 297.67961 * 13 12 11 39 39 H 0.97004 * 119.99740 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.45815 * 294.17538 * 24 10 9 41 41 H 1.09002 * 109.45962 * 54.14724 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3183 2.3142 -0.0005 5 6 1.8766 3.5097 -0.0010 6 6 3.2505 3.6492 -0.0016 7 6 4.0482 2.5136 -0.0011 8 6 3.4321 1.2740 -0.0005 9 6 4.2558 0.0120 0.0064 10 7 4.3222 -0.5367 -1.3547 11 6 5.0657 0.3608 -2.2481 12 6 4.9906 -0.1679 -3.6823 13 6 5.5863 -1.5776 -3.7333 14 6 4.8254 -2.4803 -2.7583 15 1 3.7819 -2.5501 -3.0658 16 6 5.4431 -3.8548 -2.7586 17 1 5.8492 -4.2645 -1.8456 18 6 5.4899 -4.5893 -3.9245 19 7 6.0286 -5.7891 -3.9246 20 14 4.7870 -3.8809 -5.5035 21 1 5.8472 -3.1324 -6.2253 22 1 4.2884 -4.9849 -6.3624 23 1 3.6665 -2.9623 -5.1782 24 6 4.9052 -1.8845 -1.3509 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.2513 4.3902 -0.0010 29 1 3.6994 4.6315 -0.0024 30 1 5.1252 2.5951 -0.0011 31 1 5.2629 0.2374 0.3569 32 1 3.7949 -0.7191 0.6707 33 1 4.6294 1.3587 -2.2057 34 1 6.1078 0.4066 -1.9321 35 1 3.9497 -0.2009 -4.0040 36 1 5.5555 0.4899 -4.3428 37 1 5.4956 -1.9751 -4.7441 38 1 6.6381 -1.5390 -3.4502 39 1 6.0612 -6.3060 -4.7448 40 1 5.9480 -1.8282 -1.0390 41 1 4.3522 -2.5174 -0.6567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397650602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:38 Heat of formation + Delta-G solvation = -19.641702 kcal Electronic energy + Delta-G solvation = -21941.301479 eV Core-core repulsion = 18820.550071 eV Total energy + Delta-G solvation = -3120.751408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65908 -39.85467 -38.71034 -36.03579 -34.36611 -32.97111 -31.99287 -31.66128 -28.22888 -27.47369 -26.83661 -24.33994 -23.88071 -23.19063 -22.20444 -20.48845 -19.21495 -18.82514 -17.95603 -17.32176 -16.88849 -16.47673 -16.01990 -15.86681 -15.32197 -15.27971 -14.94992 -14.83533 -14.79509 -14.25605 -14.05584 -13.79175 -13.69427 -13.18780 -12.93224 -12.81046 -12.67924 -12.47429 -12.10854 -12.04482 -11.91989 -11.75410 -11.45609 -11.02564 -10.83547 -10.71368 -10.60542 -10.52814 -9.33115 -9.10410 -8.30365 -6.33208 0.21358 0.39996 1.28451 1.35573 1.46691 2.29839 2.32572 2.77362 3.05609 3.21921 3.41584 3.90056 3.94023 4.03914 4.10795 4.14571 4.27441 4.35493 4.45228 4.45579 4.46827 4.54654 4.63727 4.65674 4.76671 4.79478 4.81163 4.89588 4.96651 5.04307 5.12800 5.17401 5.22705 5.33105 5.45059 5.60462 5.63811 5.73407 6.18120 6.27102 6.37398 6.40201 6.73979 6.95263 7.32412 8.86564 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.004851 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.056520 B = 5770.938544 C = 6088.078679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.317 6.317 3 C 0.315 3.685 4 N -0.563 5.563 5 C 0.126 3.874 6 C -0.202 4.202 7 C -0.039 4.039 8 C -0.160 4.160 9 C 0.111 3.889 10 N -0.542 5.542 11 C 0.066 3.934 12 C -0.114 4.114 13 C -0.120 4.120 14 C 0.021 3.979 15 H 0.018 0.982 16 C -0.517 4.517 17 H 0.035 0.965 18 C 0.015 3.985 19 N -0.950 5.950 20 Si 0.950 3.050 21 H -0.265 1.265 22 H -0.299 1.299 23 H -0.254 1.254 24 C 0.092 3.908 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.187 0.813 29 H 0.171 0.829 30 H 0.160 0.840 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.265 0.735 40 H 0.022 0.978 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.926 22.730 7.568 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.224 6.224 3 C 0.137 3.863 4 N -0.287 5.287 5 C -0.030 4.030 6 C -0.222 4.222 7 C -0.065 4.065 8 C -0.163 4.163 9 C -0.016 4.016 10 N -0.267 5.267 11 C -0.062 4.062 12 C -0.151 4.151 13 C -0.158 4.158 14 C 0.002 3.998 15 H 0.036 0.964 16 C -0.556 4.556 17 H 0.053 0.947 18 C -0.181 4.181 19 N -0.590 5.590 20 Si 0.777 3.223 21 H -0.191 1.191 22 H -0.227 1.227 23 H -0.178 1.178 24 C -0.035 4.035 25 H 0.071 0.929 26 H 0.126 0.874 27 H 0.079 0.921 28 H 0.204 0.796 29 H 0.189 0.811 30 H 0.177 0.823 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.175 22.174 7.308 24.737 hybrid contribution 1.233 -0.537 -0.459 1.421 sum -6.943 21.637 6.849 23.733 Atomic orbital electron populations 1.22932 0.76664 1.03855 1.01947 1.86339 1.23615 1.25037 1.87366 1.19871 0.89454 0.84790 0.92190 1.67364 1.41524 0.99495 1.20348 1.23009 0.94148 0.93575 0.92234 1.22300 0.94377 1.00663 1.04836 1.21700 1.01795 0.90232 0.92786 1.19872 0.91129 0.96778 1.08517 1.20709 0.97526 0.93331 0.90080 1.61890 1.53793 1.02245 1.08758 1.22030 0.95814 0.96095 0.92258 1.21614 1.00813 0.95794 0.96908 1.21902 0.99833 0.95665 0.98377 1.19047 0.95270 0.92400 0.93072 0.96360 1.21324 1.38081 1.00484 0.95674 0.94715 1.25791 0.95078 0.94838 1.02440 1.70045 1.47163 1.12690 1.29132 0.85819 0.79876 0.77273 0.79291 1.19082 1.22689 1.17810 1.21744 0.95824 0.88374 0.97589 0.92921 0.87417 0.92063 0.79613 0.81126 0.82293 0.92748 0.90953 0.89811 0.94439 0.92808 0.89815 0.94863 0.92823 0.92564 0.95966 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 10.38 113.37 1.18 2.14 16 2 O -0.32 -9.80 9.73 -89.96 -0.88 -10.68 16 3 C 0.32 8.99 7.47 84.78 0.63 9.62 16 4 N -0.56 -14.10 9.22 -308.94 -2.85 -16.95 16 5 C 0.13 2.21 11.18 84.64 0.95 3.15 16 6 C -0.20 -2.95 10.11 22.37 0.23 -2.72 16 7 C -0.04 -0.72 8.76 22.45 0.20 -0.53 16 8 C -0.16 -4.09 4.60 -19.67 -0.09 -4.18 16 9 C 0.11 3.20 4.78 85.56 0.41 3.61 16 10 N -0.54 -18.79 4.65 -900.93 -4.19 -22.97 16 11 C 0.07 1.98 5.27 86.33 0.45 2.44 16 12 C -0.11 -3.84 6.09 30.65 0.19 -3.65 16 13 C -0.12 -5.14 4.73 30.67 0.15 -5.00 16 14 C 0.02 1.03 1.85 -11.49 -0.02 1.01 16 15 H 0.02 0.95 7.21 -2.38 -0.02 0.93 16 16 C -0.52 -30.28 9.14 25.60 0.23 -30.04 16 17 H 0.03 2.23 7.99 -2.91 -0.02 2.20 16 18 C 0.02 0.92 5.45 84.65 0.46 1.38 16 19 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 20 Si 0.95 46.80 24.35 68.60 1.67 48.47 16 21 H -0.26 -12.30 6.89 99.48 0.69 -11.61 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 23 H -0.25 -11.99 6.53 99.48 0.65 -11.34 16 24 C 0.09 3.84 4.68 86.32 0.40 4.25 16 25 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 26 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 28 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 30 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.05 1.37 8.01 -2.39 -0.02 1.35 16 32 H 0.07 2.24 7.71 -2.39 -0.02 2.22 16 33 H 0.08 2.19 6.34 -2.39 -0.02 2.17 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.03 1.49 3.34 -2.39 -0.01 1.48 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 2.40 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -72.01 323.07 0.35 -71.66 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.93 Total: 9.21 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 5.36 Total: -18.52 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -6.73 Total: -100.15 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.88 Total: -10.68 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.67 Total: 48.47 kcal Total: -72.01 0.35 -71.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397650602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.020 kcal (2) G-P(sol) polarization free energy of solvation -72.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds