Wall clock time and date at job start Mon Mar 30 2020 01:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35740 * 116.99652 * 2 1 4 4 C 1.39285 * 120.85287 * 359.97438 * 3 2 1 5 5 C 1.37943 * 119.09450 * 180.02562 * 4 3 2 6 6 N 1.31975 * 120.82408 * 359.72133 * 5 4 3 7 7 C 1.31942 * 121.86329 * 0.57208 * 6 5 4 8 8 C 1.37997 * 120.82367 * 359.42610 * 7 6 5 9 9 C 1.50699 * 120.45605 * 180.25919 * 8 7 6 10 10 N 1.46900 * 109.46890 * 260.00106 * 9 8 7 11 11 C 1.46846 * 111.00239 * 66.04486 * 10 9 8 12 12 C 1.53039 * 109.52459 * 174.15863 * 11 10 9 13 13 C 1.53112 * 109.27601 * 59.18344 * 12 11 10 14 14 C 1.53122 * 109.16159 * 302.34225 * 13 12 11 15 15 H 1.09002 * 109.50443 * 297.71578 * 14 13 12 16 16 C 1.50697 * 109.50439 * 177.63619 * 14 13 12 17 17 H 1.08002 * 119.99889 * 275.20882 * 16 14 13 18 18 C 1.37884 * 120.00103 * 95.20774 * 16 14 13 19 19 N 1.31511 * 119.99965 * 185.53135 * 18 16 14 20 20 Si 1.86803 * 119.99718 * 5.52609 * 18 16 14 21 21 H 1.48497 * 109.46710 * 84.78325 * 20 18 16 22 22 H 1.48500 * 109.46893 * 204.78270 * 20 18 16 23 23 H 1.48505 * 109.46996 * 324.78634 * 20 18 16 24 24 C 1.46846 * 111.00023 * 301.83753 * 10 9 8 25 25 H 1.08995 * 109.47162 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46826 * 299.99692 * 1 2 3 27 27 H 1.08999 * 109.47081 * 59.99495 * 1 2 3 28 28 H 1.08000 * 120.44674 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.58664 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.58960 * 179.71122 * 7 6 5 31 31 H 1.08999 * 109.47275 * 19.99816 * 9 8 7 32 32 H 1.09001 * 109.47194 * 140.00177 * 9 8 7 33 33 H 1.08998 * 109.46322 * 294.17852 * 11 10 9 34 34 H 1.09000 * 109.46092 * 54.14145 * 11 10 9 35 35 H 1.08997 * 109.49912 * 179.12110 * 12 11 10 36 36 H 1.08997 * 109.50030 * 299.24034 * 12 11 10 37 37 H 1.08997 * 109.52709 * 62.24769 * 13 12 11 38 38 H 1.09000 * 109.52512 * 182.37777 * 13 12 11 39 39 H 0.97001 * 119.99717 * 180.02562 * 19 18 16 40 40 H 1.09006 * 109.46086 * 305.85508 * 24 10 9 41 41 H 1.09005 * 109.46467 * 65.82098 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6457 0.0045 7 6 4.0231 2.5511 -0.0005 8 6 3.4346 1.3028 0.0001 9 6 4.2839 0.0580 0.0002 10 7 4.3607 -0.4825 -1.3636 11 6 5.0850 0.4345 -2.2530 12 6 5.2722 -0.2226 -3.6224 13 6 3.9004 -0.5592 -4.2133 14 6 3.1475 -1.4762 -3.2454 15 1 3.6966 -2.4105 -3.1278 16 6 1.7735 -1.7656 -3.7924 17 1 0.9632 -1.0752 -3.6099 18 6 1.5507 -2.9118 -4.5258 19 7 0.3819 -3.1116 -5.0946 20 14 2.9091 -4.1806 -4.7114 21 1 2.8975 -5.0930 -3.5399 22 1 2.6870 -4.9654 -5.9524 23 1 4.2224 -3.4918 -4.7895 24 6 3.0220 -0.7828 -1.8869 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.2245 2.3566 -0.0014 29 1 1.4008 4.5174 -0.0011 30 1 5.0999 2.6329 -0.0004 31 1 5.2865 0.3021 0.3513 32 1 3.8385 -0.6856 0.6611 33 1 4.5143 1.3560 -2.3673 34 1 6.0604 0.6625 -1.8232 35 1 5.7960 0.4644 -4.2870 36 1 5.8547 -1.1370 -3.5107 37 1 3.3322 0.3591 -4.3614 38 1 4.0300 -1.0656 -5.1698 39 1 0.2251 -3.9181 -5.6103 40 1 2.4989 -1.4390 -1.1912 41 1 2.4608 0.1445 -2.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397664233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:29 Heat of formation + Delta-G solvation = -2.580330 kcal Electronic energy + Delta-G solvation = -22652.013684 eV Core-core repulsion = 19532.002113 eV Total energy + Delta-G solvation = -3120.011571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85263 -38.16973 -38.08060 -34.27979 -32.44374 -31.16500 -30.66306 -30.19973 -27.51484 -26.18625 -24.98264 -23.05028 -22.82292 -21.47136 -20.81597 -18.78027 -18.16165 -16.94747 -16.84011 -15.96281 -15.47857 -15.00397 -14.87046 -14.33952 -14.06015 -14.03833 -13.93383 -13.44706 -13.18064 -12.77420 -12.53290 -12.47794 -12.14650 -11.81297 -11.49522 -11.33501 -11.15533 -10.97240 -10.92057 -10.55028 -10.15179 -9.77897 -9.56384 -9.49073 -9.24046 -9.09703 -8.89044 -8.62568 -8.43905 -7.74364 -6.05666 -4.03687 1.11738 1.43111 3.27422 3.33837 3.41218 3.46469 3.83542 4.44342 4.46736 4.55956 4.72358 4.83580 5.07049 5.17373 5.25918 5.32494 5.38886 5.41668 5.59957 5.63296 5.70134 5.76051 5.85952 5.93690 6.07463 6.09805 6.17222 6.27655 6.44055 6.51576 6.58729 6.60329 6.84406 6.89599 6.96774 7.30301 7.37066 7.54870 7.65276 7.69961 7.92476 8.04022 8.56728 8.98721 9.59227 11.07643 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.006621 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.996845 B = 4227.667366 C = 4973.101171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.292 6.292 3 C 0.186 3.814 4 C -0.264 4.264 5 C 0.129 3.871 6 N -0.514 5.514 7 C 0.136 3.864 8 C -0.202 4.202 9 C 0.106 3.894 10 N -0.530 5.530 11 C 0.060 3.940 12 C -0.120 4.120 13 C -0.112 4.112 14 C 0.018 3.982 15 H 0.037 0.963 16 C -0.506 4.506 17 H 0.068 0.932 18 C 0.071 3.929 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.263 1.263 24 C 0.079 3.921 25 H 0.107 0.893 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.262 0.738 40 H 0.076 0.924 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.431 9.107 11.317 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.202 6.202 3 C 0.132 3.868 4 C -0.285 4.285 5 C -0.028 4.028 6 N -0.226 5.226 7 C -0.020 4.020 8 C -0.207 4.207 9 C -0.023 4.023 10 N -0.253 5.253 11 C -0.068 4.068 12 C -0.158 4.158 13 C -0.150 4.150 14 C -0.002 4.002 15 H 0.056 0.944 16 C -0.544 4.544 17 H 0.086 0.914 18 C -0.130 4.130 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.219 1.219 23 H -0.188 1.188 24 C -0.048 4.048 25 H 0.125 0.875 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.155 0.845 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.058 9.079 11.212 15.288 hybrid contribution -0.717 -0.576 -0.333 0.978 sum 4.341 8.503 10.879 14.474 Atomic orbital electron populations 1.23135 0.77881 1.04875 1.01006 1.86315 1.21809 1.25315 1.86725 1.19175 0.92051 0.85041 0.90577 1.22217 1.01570 0.93338 1.11404 1.22460 0.90334 0.96823 0.93202 1.67681 1.07083 1.32149 1.15722 1.22489 0.99903 0.86380 0.93243 1.21214 0.92291 0.99212 1.08009 1.21055 0.97507 0.91017 0.92715 1.62471 1.20156 1.41880 1.00763 1.22011 0.97145 0.93812 0.93859 1.21676 0.99263 1.00007 0.94867 1.21855 0.93509 1.00048 0.99597 1.19208 0.96139 0.94516 0.90306 0.94449 1.20918 0.94038 1.06917 1.32543 0.91414 1.25037 0.95285 0.97934 0.94731 1.69913 1.22992 1.27279 1.34034 0.86839 0.83421 0.81783 0.77392 1.20192 1.21902 1.18772 1.22366 0.85961 0.98634 0.97838 0.87480 0.93067 0.92087 0.84506 0.82928 0.82699 0.90395 0.89748 0.95524 0.92057 0.93019 0.91989 0.93565 0.93092 0.92781 0.90558 0.95909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.84 101.05 0.99 1.32 16 2 O -0.29 -4.60 6.63 -18.93 -0.13 -4.72 16 3 C 0.19 2.83 5.21 -38.82 -0.20 2.63 16 4 C -0.26 -3.51 9.11 -39.30 -0.36 -3.86 16 5 C 0.13 1.66 11.17 -17.60 -0.20 1.46 16 6 N -0.51 -7.38 10.36 -13.33 -0.14 -7.52 16 7 C 0.14 1.87 10.08 -17.59 -0.18 1.69 16 8 C -0.20 -2.99 4.08 -104.34 -0.43 -3.41 16 9 C 0.11 1.55 5.41 -4.98 -0.03 1.53 16 10 N -0.53 -9.42 4.86 -236.11 -1.15 -10.57 16 11 C 0.06 0.99 5.01 -3.83 -0.02 0.97 16 12 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 13 C -0.11 -2.44 5.27 -26.61 -0.14 -2.58 16 14 C 0.02 0.42 1.94 -91.69 -0.18 0.24 16 15 H 0.04 0.93 5.26 -51.93 -0.27 0.66 16 16 C -0.51 -14.06 8.86 -34.44 -0.31 -14.36 16 17 H 0.07 2.04 8.06 -52.49 -0.42 1.62 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 20 Si 0.88 21.87 27.01 -169.99 -4.59 17.28 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.26 -6.35 6.80 56.52 0.38 -5.96 16 24 C 0.08 1.64 3.02 -3.83 -0.01 1.63 16 25 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.05 0.50 7.71 -51.93 -0.40 0.10 16 27 H 0.06 0.79 7.71 -51.93 -0.40 0.39 16 28 H 0.14 1.50 6.47 -52.49 -0.34 1.16 16 29 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.16 1.76 8.04 -52.49 -0.42 1.33 16 31 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 32 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.03 0.46 7.02 -51.93 -0.36 0.10 16 34 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.08 1.66 6.74 -51.93 -0.35 1.31 16 41 H 0.02 0.50 5.80 -51.93 -0.30 0.20 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -31.54 318.18 -7.94 -39.48 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.20 Total: 1.00 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.31 Total: -13.12 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.51 Total: -44.71 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.13 Total: -4.72 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.59 Total: 17.28 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.54 -7.94 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.902 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds