Wall clock time and date at job start Mon Mar 30 2020 01:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35740 * 116.99652 * 2 1 4 4 C 1.39285 * 120.85287 * 359.97438 * 3 2 1 5 5 C 1.37943 * 119.09450 * 180.02562 * 4 3 2 6 6 N 1.31975 * 120.82408 * 359.72133 * 5 4 3 7 7 C 1.31942 * 121.86329 * 0.57208 * 6 5 4 8 8 C 1.37997 * 120.82367 * 359.42610 * 7 6 5 9 9 C 1.50699 * 120.45605 * 180.25919 * 8 7 6 10 10 N 1.46900 * 109.46890 * 260.00106 * 9 8 7 11 11 C 1.46846 * 111.00239 * 66.04486 * 10 9 8 12 12 C 1.53039 * 109.52459 * 174.15863 * 11 10 9 13 13 C 1.53112 * 109.27601 * 59.18344 * 12 11 10 14 14 C 1.53122 * 109.16159 * 302.34225 * 13 12 11 15 15 H 1.09002 * 109.50443 * 297.71578 * 14 13 12 16 16 C 1.50697 * 109.50439 * 177.63619 * 14 13 12 17 17 H 1.08002 * 119.99889 * 275.20882 * 16 14 13 18 18 C 1.37884 * 120.00103 * 95.20774 * 16 14 13 19 19 N 1.31511 * 119.99965 * 185.53135 * 18 16 14 20 20 Si 1.86803 * 119.99718 * 5.52609 * 18 16 14 21 21 H 1.48497 * 109.46710 * 84.78325 * 20 18 16 22 22 H 1.48500 * 109.46893 * 204.78270 * 20 18 16 23 23 H 1.48505 * 109.46996 * 324.78634 * 20 18 16 24 24 C 1.46846 * 111.00023 * 301.83753 * 10 9 8 25 25 H 1.08995 * 109.47162 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46826 * 299.99692 * 1 2 3 27 27 H 1.08999 * 109.47081 * 59.99495 * 1 2 3 28 28 H 1.08000 * 120.44674 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.58664 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.58960 * 179.71122 * 7 6 5 31 31 H 1.08999 * 109.47275 * 19.99816 * 9 8 7 32 32 H 1.09001 * 109.47194 * 140.00177 * 9 8 7 33 33 H 1.08998 * 109.46322 * 294.17852 * 11 10 9 34 34 H 1.09000 * 109.46092 * 54.14145 * 11 10 9 35 35 H 1.08997 * 109.49912 * 179.12110 * 12 11 10 36 36 H 1.08997 * 109.50030 * 299.24034 * 12 11 10 37 37 H 1.08997 * 109.52709 * 62.24769 * 13 12 11 38 38 H 1.09000 * 109.52512 * 182.37777 * 13 12 11 39 39 H 0.97001 * 119.99717 * 180.02562 * 19 18 16 40 40 H 1.09006 * 109.46086 * 305.85508 * 24 10 9 41 41 H 1.09005 * 109.46467 * 65.82098 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6457 0.0045 7 6 4.0231 2.5511 -0.0005 8 6 3.4346 1.3028 0.0001 9 6 4.2839 0.0580 0.0002 10 7 4.3607 -0.4825 -1.3636 11 6 5.0850 0.4345 -2.2530 12 6 5.2722 -0.2226 -3.6224 13 6 3.9004 -0.5592 -4.2133 14 6 3.1475 -1.4762 -3.2454 15 1 3.6966 -2.4105 -3.1278 16 6 1.7735 -1.7656 -3.7924 17 1 0.9632 -1.0752 -3.6099 18 6 1.5507 -2.9118 -4.5258 19 7 0.3819 -3.1116 -5.0946 20 14 2.9091 -4.1806 -4.7114 21 1 2.8975 -5.0930 -3.5399 22 1 2.6870 -4.9654 -5.9524 23 1 4.2224 -3.4918 -4.7895 24 6 3.0220 -0.7828 -1.8869 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.2245 2.3566 -0.0014 29 1 1.4008 4.5174 -0.0011 30 1 5.0999 2.6329 -0.0004 31 1 5.2865 0.3021 0.3513 32 1 3.8385 -0.6856 0.6611 33 1 4.5143 1.3560 -2.3673 34 1 6.0604 0.6625 -1.8232 35 1 5.7960 0.4644 -4.2870 36 1 5.8547 -1.1370 -3.5107 37 1 3.3322 0.3591 -4.3614 38 1 4.0300 -1.0656 -5.1698 39 1 0.2251 -3.9181 -5.6103 40 1 2.4989 -1.4390 -1.1912 41 1 2.4608 0.1445 -2.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397664233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:28 Heat of formation + Delta-G solvation = -24.133339 kcal Electronic energy + Delta-G solvation = -22652.948292 eV Core-core repulsion = 19532.002113 eV Total energy + Delta-G solvation = -3120.946180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.95457 -39.62452 -39.16634 -35.87260 -34.31666 -32.26201 -32.02791 -31.82255 -28.59090 -27.44765 -26.90505 -24.35804 -23.93733 -22.92905 -22.28803 -20.40238 -19.28936 -18.91597 -18.04668 -17.27348 -16.66448 -16.45893 -15.95128 -15.78535 -15.61661 -15.31026 -15.14805 -14.85467 -14.61069 -14.35522 -14.27421 -13.91897 -13.41717 -13.10419 -12.98141 -12.82467 -12.66643 -12.41397 -12.35537 -12.00533 -11.81199 -11.72173 -11.29827 -11.04273 -10.82104 -10.63236 -10.57882 -10.12568 -9.73286 -9.13939 -8.28500 -6.30343 0.09418 0.35229 1.35704 1.36460 1.48532 2.22586 2.36480 2.78347 3.06196 3.23004 3.52176 3.69758 3.83818 4.00270 4.15926 4.19096 4.21916 4.30138 4.31662 4.37225 4.42504 4.55797 4.67889 4.73679 4.76067 4.83003 4.89352 4.91703 4.98700 5.04173 5.11944 5.16964 5.25051 5.28005 5.57535 5.59822 5.66858 5.79251 6.17995 6.23992 6.31786 6.41660 6.76327 7.01317 7.35289 8.88363 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.006621 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.996845 B = 4227.667366 C = 4973.101171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.315 6.315 3 C 0.164 3.836 4 C -0.270 4.270 5 C 0.127 3.873 6 N -0.530 5.530 7 C 0.138 3.862 8 C -0.216 4.216 9 C 0.109 3.891 10 N -0.536 5.536 11 C 0.062 3.938 12 C -0.115 4.115 13 C -0.110 4.110 14 C 0.014 3.986 15 H 0.032 0.968 16 C -0.507 4.507 17 H 0.026 0.974 18 C 0.015 3.985 19 N -0.950 5.950 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.248 1.248 24 C 0.101 3.899 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.154 0.846 29 H 0.183 0.817 30 H 0.182 0.818 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.018 0.982 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.060 0.940 41 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 9.971 12.404 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.110 3.890 4 C -0.291 4.291 5 C -0.029 4.029 6 N -0.242 5.242 7 C -0.018 4.018 8 C -0.221 4.221 9 C -0.019 4.019 10 N -0.258 5.258 11 C -0.066 4.066 12 C -0.152 4.152 13 C -0.149 4.149 14 C -0.005 4.005 15 H 0.050 0.950 16 C -0.545 4.545 17 H 0.045 0.955 18 C -0.182 4.182 19 N -0.591 5.591 20 Si 0.765 3.235 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.171 1.171 24 C -0.027 4.027 25 H 0.123 0.877 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.172 0.828 29 H 0.200 0.800 30 H 0.199 0.801 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.036 0.964 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 7.670 9.965 12.319 17.604 hybrid contribution -1.629 -0.743 -0.639 1.901 sum 6.040 9.222 11.680 16.061 Atomic orbital electron populations 1.23244 0.76873 1.05138 1.01932 1.86255 1.23076 1.26236 1.87015 1.19541 0.92835 0.85347 0.91325 1.22472 1.02571 0.93006 1.11048 1.22976 0.90274 0.97788 0.91909 1.67757 1.07742 1.32466 1.16284 1.22885 1.01113 0.85729 0.92122 1.21297 0.92147 0.99646 1.09012 1.21096 0.99389 0.90815 0.90602 1.62393 1.17837 1.43277 1.02336 1.22075 0.98631 0.92777 0.93077 1.21644 0.96474 1.01049 0.96070 1.21728 0.95852 0.98626 0.98649 1.19192 0.93697 0.95178 0.92423 0.94999 1.21164 0.95158 1.06003 1.32200 0.95549 1.25855 0.97636 1.00108 0.94562 1.70053 1.25290 1.28200 1.35508 0.85837 0.80949 0.79178 0.77571 1.19315 1.21576 1.17139 1.21883 0.87788 0.97174 0.95813 0.87672 0.90011 0.93166 0.82836 0.80014 0.80131 0.86986 0.90493 0.96377 0.88122 0.90281 0.91662 0.95008 0.94459 0.92675 0.92165 0.97484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.84 113.37 1.12 1.70 16 2 O -0.32 -10.13 6.63 -90.64 -0.60 -10.73 16 3 C 0.16 4.91 5.21 22.77 0.12 5.03 16 4 C -0.27 -6.90 9.11 22.45 0.20 -6.70 16 5 C 0.13 3.02 11.17 84.60 0.95 3.97 16 6 N -0.53 -14.00 10.36 -196.09 -2.03 -16.03 16 7 C 0.14 3.42 10.08 84.62 0.85 4.27 16 8 C -0.22 -6.01 4.08 -19.68 -0.08 -6.09 16 9 C 0.11 2.94 5.41 85.56 0.46 3.40 16 10 N -0.54 -17.91 4.86 -900.92 -4.38 -22.29 16 11 C 0.06 1.85 5.01 86.33 0.43 2.28 16 12 C -0.11 -3.77 6.09 30.64 0.19 -3.59 16 13 C -0.11 -4.75 5.27 30.67 0.16 -4.59 16 14 C 0.01 0.69 1.94 -11.49 -0.02 0.67 16 15 H 0.03 1.56 5.26 -2.39 -0.01 1.54 16 16 C -0.51 -29.25 8.86 25.60 0.23 -29.02 16 17 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 18 C 0.02 0.89 5.47 84.66 0.46 1.35 16 19 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 20 Si 0.94 45.37 27.01 68.60 1.85 47.22 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.25 -11.24 6.80 99.48 0.68 -10.56 16 24 C 0.10 4.23 3.02 86.33 0.26 4.49 16 25 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.08 1.56 7.71 -2.39 -0.02 1.54 16 27 H 0.05 1.37 7.71 -2.39 -0.02 1.35 16 28 H 0.15 3.23 6.47 -2.91 -0.02 3.21 16 29 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.18 3.37 8.04 -2.91 -0.02 3.35 16 31 H 0.11 2.25 7.94 -2.39 -0.02 2.23 16 32 H 0.08 2.18 7.93 -2.39 -0.02 2.17 16 33 H 0.02 0.58 7.02 -2.39 -0.02 0.56 16 34 H 0.10 2.28 8.06 -2.39 -0.02 2.26 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.06 2.68 6.74 -2.38 -0.02 2.66 16 41 H 0.01 0.31 5.80 -2.38 -0.01 0.30 16 Total: -1.00 -70.13 318.18 1.45 -68.68 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.98 Total: 15.28 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.33 Total: -22.84 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -6.11 Total: -97.62 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.60 Total: -10.73 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.85 Total: 47.22 kcal Total: -70.13 1.45 -68.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.549 kcal (2) G-P(sol) polarization free energy of solvation -70.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds