Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46725 * 60.00093 * 8 6 4 10 10 H 1.48505 * 109.46988 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47116 * 300.00069 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 C 1.38630 * 119.99945 * 180.02562 * 13 12 2 15 15 C 1.39167 * 120.48468 * 0.02562 * 14 13 12 16 16 C 1.39128 * 118.26951 * 180.02562 * 15 14 13 17 17 N 1.38633 * 120.48876 * 179.97438 * 16 15 14 18 18 C 1.46507 * 119.99640 * 359.97438 * 17 16 15 19 19 C 1.52999 * 117.49376 * 223.74940 * 18 17 16 20 20 C 1.52999 * 117.49885 * 155.08836 * 18 17 16 21 21 N 1.33198 * 119.02868 * 359.97438 * 16 15 14 22 22 C 1.31723 * 120.88445 * 0.02562 * 21 16 15 23 23 N 1.31762 * 121.90654 * 359.71063 * 22 21 16 24 24 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 25 25 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 26 26 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 29 29 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 30 30 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 32 32 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 33 33 H 0.97000 * 120.00420 * 0.02562 * 13 12 2 34 34 H 1.07998 * 120.86830 * 359.97438 * 15 14 13 35 35 H 0.96998 * 120.00378 * 179.97438 * 17 16 15 36 36 H 1.08991 * 115.54923 * 9.41522 * 18 17 16 37 37 H 1.08999 * 117.50113 * 359.97438 * 19 18 17 38 38 H 1.09004 * 117.49743 * 145.02291 * 19 18 17 39 39 H 1.08992 * 117.49994 * 214.97702 * 20 18 17 40 40 H 1.09001 * 117.49486 * 0.02562 * 20 18 17 41 41 H 1.07997 * 119.05074 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8277 -2.5198 -4.0082 10 1 1.8266 -0.4199 -5.2205 11 1 3.8072 -1.1191 -4.0079 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8872 -0.5041 3.7044 15 6 2.6874 -1.6341 3.8438 16 6 2.9950 -2.0693 5.1290 17 7 3.7881 -3.1900 5.3211 18 6 4.3084 -3.9259 4.1660 19 6 4.2396 -5.4536 4.2125 20 6 5.5866 -4.7426 4.3661 21 7 2.5165 -1.3933 6.1721 22 6 1.7618 -0.3276 5.9987 23 7 1.4525 0.1188 4.7983 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 0.7080 1.1609 -3.4844 31 1 1.6767 -1.7490 1.2492 32 1 3.1301 -0.7209 1.2494 33 1 0.9939 0.7578 2.3565 34 1 3.0593 -2.1600 2.9769 35 1 3.9985 -3.4870 6.2202 36 1 4.1647 -3.4448 3.1986 37 1 3.8078 -5.9112 5.1025 38 1 4.0513 -5.9777 3.2754 39 1 6.2837 -4.7992 3.5301 40 1 6.0401 -4.7328 5.3572 41 1 1.3893 0.1978 6.8656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413406476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = 77.150434 kcal Electronic energy + Delta-G solvation = -21237.177731 eV Core-core repulsion = 18152.916297 eV Total energy + Delta-G solvation = -3084.261435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51982 -38.09031 -37.20256 -34.74758 -33.84171 -31.68779 -30.43332 -29.15325 -25.87008 -25.74520 -25.07790 -23.84765 -22.60762 -22.24378 -21.45165 -18.91005 -18.14782 -17.53060 -16.21704 -15.80094 -15.21816 -15.06338 -14.80934 -14.75583 -14.18562 -14.00404 -13.59320 -13.52009 -12.87058 -12.79728 -12.42564 -12.24618 -11.78870 -11.59567 -11.23046 -11.04064 -10.78321 -10.72663 -10.66198 -10.37740 -10.26445 -10.15648 -9.92044 -9.57263 -9.41378 -8.86693 -8.85101 -8.43717 -7.98906 -7.55009 -6.06630 -4.18124 1.58494 1.95128 2.93349 3.25111 3.30701 3.32149 3.64644 3.66473 4.34941 4.38312 4.56697 4.62708 4.75408 4.78103 5.02911 5.19897 5.30674 5.40577 5.60522 5.68966 5.80692 5.85740 5.86893 6.05768 6.14582 6.40135 6.45392 6.68315 6.83380 6.87766 6.97593 6.97659 7.14491 7.31490 7.52279 7.56295 7.63647 7.90170 7.96739 8.03842 8.18668 8.33574 8.76446 8.81980 9.47916 10.94617 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.004699 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.963429 B = 5957.736406 C = 7368.329360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.059 3.941 3 C -0.131 4.131 4 C -0.510 4.510 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.135 3.865 13 N -0.694 5.694 14 C 0.463 3.537 15 C -0.361 4.361 16 C 0.459 3.541 17 N -0.689 5.689 18 C 0.090 3.910 19 C -0.196 4.196 20 C -0.191 4.191 21 N -0.626 5.626 22 C 0.370 3.630 23 N -0.617 5.617 24 H 0.008 0.992 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.008 0.992 30 H 0.261 0.739 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.406 0.594 34 H 0.136 0.864 35 H 0.404 0.596 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 -7.172 12.446 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.058 3.942 3 C -0.189 4.189 4 C -0.548 4.548 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.012 3.988 13 N -0.323 5.323 14 C 0.220 3.780 15 C -0.395 4.395 16 C 0.220 3.780 17 N -0.320 5.320 18 C -0.017 4.017 19 C -0.235 4.235 20 C -0.229 4.229 21 N -0.356 5.356 22 C 0.078 3.922 23 N -0.346 5.346 24 H 0.027 0.973 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.244 0.756 34 H 0.154 0.846 35 H 0.240 0.760 36 H 0.154 0.846 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.717 -6.745 12.616 15.064 hybrid contribution 0.549 -0.809 -1.220 1.563 sum 5.266 -7.554 11.396 14.652 Atomic orbital electron populations 1.21827 0.97590 0.99179 1.00308 1.18327 0.92953 0.92838 0.90095 1.21826 0.98494 0.98280 1.00310 1.20888 1.31875 1.12181 0.89860 0.92560 1.24876 0.94792 0.94882 0.98851 1.69795 1.36282 1.22602 1.23438 0.86637 0.79183 0.79766 0.82273 1.20292 1.21271 1.20290 1.21856 0.97693 0.95746 0.83499 1.45097 1.53606 1.31967 1.01622 1.18367 0.86086 0.87109 0.86476 1.21255 1.15404 1.05374 0.97466 1.18040 0.85704 0.85216 0.89009 1.43642 1.53228 1.27231 1.07851 1.21607 0.99092 0.89791 0.91204 1.23490 1.00400 0.95582 1.04026 1.23411 0.91523 1.04303 1.03695 1.67838 1.20992 1.13317 1.33448 1.24184 0.87238 0.87394 0.93387 1.67962 1.32077 1.36090 0.98470 0.97265 0.89566 0.95486 0.95485 0.89575 0.97253 0.92847 0.92883 0.92917 0.75611 0.84625 0.76006 0.84643 0.88573 0.87829 0.87739 0.88570 0.79440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -12.77 8.01 -34.44 -0.28 -13.05 16 5 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.20 9.35 55.43 0.52 -22.68 16 8 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 C 0.14 2.64 3.75 -4.04 -0.02 2.63 16 13 N -0.69 -12.76 5.12 -60.33 -0.31 -13.06 16 14 C 0.46 8.26 7.70 -154.71 -1.19 7.07 16 15 C -0.36 -5.94 8.63 -38.91 -0.34 -6.27 16 16 C 0.46 6.98 7.70 -154.70 -1.19 5.79 16 17 N -0.69 -8.28 5.72 -53.84 -0.31 -8.59 16 18 C 0.09 0.94 6.32 -67.93 -0.43 0.51 16 19 C -0.20 -1.68 10.46 -26.69 -0.28 -1.96 16 20 C -0.19 -1.56 10.46 -26.69 -0.28 -1.84 16 21 N -0.63 -9.62 10.47 -13.88 -0.15 -9.76 16 22 C 0.37 5.51 12.28 -92.24 -1.13 4.38 16 23 N -0.62 -10.61 10.47 -13.88 -0.15 -10.76 16 24 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 25 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 29 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 30 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 31 H 0.05 1.04 7.97 -51.93 -0.41 0.62 16 32 H 0.05 1.03 7.97 -51.93 -0.41 0.61 16 33 H 0.41 7.58 6.29 -40.82 -0.26 7.32 16 34 H 0.14 2.12 4.78 -52.49 -0.25 1.87 16 35 H 0.40 4.26 8.95 -40.82 -0.37 3.90 16 36 H 0.14 1.52 5.94 -51.93 -0.31 1.21 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -27.14 329.84 -10.99 -38.14 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.85 Total: 11.86 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -4.70 Total: -5.19 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.39 Total: -64.85 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.14 -10.99 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413406476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.286 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds