Wall clock time and date at job start Mon Mar 30 2020 01:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99864 * 2 1 4 4 H 1.48498 * 109.47250 * 269.99999 * 3 2 1 5 5 H 1.48505 * 109.47097 * 29.99785 * 3 2 1 6 6 H 1.48500 * 109.47153 * 149.99594 * 3 2 1 7 7 C 1.37878 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00322 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.46741 * 180.02562 * 9 7 2 11 11 C 1.46962 * 111.00455 * 58.23211 * 10 9 7 12 12 C 1.53463 * 109.74520 * 165.12770 * 11 10 9 13 13 N 1.46307 * 108.17887 * 49.59197 * 12 11 10 14 14 C 1.35941 * 123.86136 * 343.75743 * 13 12 11 15 15 N 1.29636 * 107.35655 * 179.73078 * 14 13 12 16 16 N 1.28981 * 109.47304 * 0.12110 * 15 14 13 17 17 C 1.30924 * 109.75617 * 359.95838 * 16 15 14 18 18 C 1.50694 * 126.48064 * 179.97438 * 17 16 15 19 19 C 1.54272 * 110.03393 * 57.19306 * 18 17 16 20 20 C 1.54892 * 104.19723 * 217.10222 * 19 18 17 21 21 C 1.54892 * 102.74639 * 37.94140 * 20 19 18 22 22 C 1.53877 * 110.03466 * 300.02393 * 18 17 16 23 23 C 1.47384 * 110.99926 * 293.95004 * 10 9 7 24 24 H 0.96999 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47195 * 60.00000 * 9 7 2 26 26 H 1.09003 * 109.46804 * 299.99833 * 9 7 2 27 27 H 1.09005 * 109.42401 * 285.20729 * 11 10 9 28 28 H 1.09000 * 109.42741 * 45.04088 * 11 10 9 29 29 H 1.08997 * 109.71457 * 289.91969 * 12 11 10 30 30 H 1.09002 * 109.72420 * 169.26852 * 12 11 10 31 31 H 1.09007 * 110.02009 * 178.63435 * 18 17 16 32 32 H 1.08992 * 110.48522 * 335.78232 * 19 18 17 33 33 H 1.09001 * 110.48483 * 98.42259 * 19 18 17 34 34 H 1.09000 * 110.75677 * 279.62705 * 20 19 18 35 35 H 1.08997 * 110.91503 * 156.33053 * 20 19 18 36 36 H 1.08997 * 110.48360 * 203.38194 * 21 20 19 37 37 H 1.08997 * 110.59697 * 80.79149 * 21 20 19 38 38 H 1.09001 * 110.03304 * 238.56687 * 22 18 17 39 39 H 1.08991 * 110.03164 * 0.02562 * 22 18 17 40 40 H 1.09010 * 109.75367 * 54.57756 * 23 10 9 41 41 H 1.08998 * 109.76149 * 293.83817 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2058 -3.6156 0.0018 11 6 3.0962 -3.5461 1.1689 12 6 3.8177 -4.8882 1.3513 13 7 4.3916 -5.2767 0.0628 14 6 4.0257 -4.7278 -1.1258 15 7 4.7337 -5.2985 -2.0497 16 7 5.5174 -6.1713 -1.5133 17 6 5.3377 -6.1897 -0.2166 18 6 6.0563 -7.0677 0.7752 19 6 7.5796 -6.8480 0.6691 20 6 8.1831 -8.2570 0.8917 21 6 7.1799 -9.1788 0.1548 22 6 5.8021 -8.5497 0.4482 23 6 2.9745 -3.6546 -1.2551 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 3.8323 -2.7566 1.0167 28 1 2.5089 -3.3261 2.0604 29 1 3.1069 -5.6459 1.6808 30 1 4.6116 -4.7816 2.0905 31 1 5.7157 -6.8448 1.7864 32 1 7.8428 -6.4721 -0.3195 33 1 7.9206 -6.1602 1.4429 34 1 8.2204 -8.4978 1.9541 35 1 9.1748 -8.3305 0.4454 36 1 7.2292 -10.1921 0.5535 37 1 7.3775 -9.1814 -0.9171 38 1 5.3390 -9.0461 1.3010 39 1 5.1594 -8.6338 -0.4280 40 1 3.4522 -2.6896 -1.4249 41 1 2.3097 -3.8885 -2.0866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429416978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:10 Heat of formation + Delta-G solvation = 69.653735 kcal Electronic energy + Delta-G solvation = -21725.822951 eV Core-core repulsion = 18641.236436 eV Total energy + Delta-G solvation = -3084.586516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.97454 -38.23116 -37.57876 -34.45085 -32.68559 -31.31918 -29.91904 -28.85479 -28.40297 -26.83985 -24.80529 -23.58997 -22.31671 -21.39185 -20.79056 -19.49942 -19.18681 -17.03431 -16.55907 -16.23617 -15.81141 -15.41049 -14.93651 -14.74043 -14.05860 -13.78311 -13.60275 -13.51810 -13.36215 -12.37458 -12.31611 -11.85959 -11.67197 -11.45801 -11.26967 -11.24936 -11.20876 -11.19161 -10.96971 -10.93487 -10.88979 -10.72407 -10.56512 -10.18464 -9.95503 -9.85041 -9.76864 -8.65860 -8.58144 -7.57449 -6.20041 -4.30702 2.14343 2.78028 3.17650 3.18884 3.26480 3.28144 4.17582 4.27588 4.41515 4.45169 4.48240 4.75751 4.81956 4.90670 5.08511 5.13508 5.26736 5.27554 5.35176 5.35961 5.39686 5.51686 5.63105 5.72028 5.75506 5.90419 5.94560 6.04699 6.13252 6.14943 6.19594 6.25526 6.29500 6.36248 6.51907 6.91087 7.17323 7.30637 7.62597 7.72522 7.85522 8.04291 8.77076 9.09130 9.38003 10.85644 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035132 B = 0.003925 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.796691 B = 7131.993191 C = 7218.065396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.057 0.943 9 C 0.190 3.810 10 N -0.542 5.542 11 C 0.049 3.951 12 C 0.106 3.894 13 N -0.463 5.463 14 C 0.195 3.805 15 N -0.301 5.301 16 N -0.300 5.300 17 C 0.172 3.828 18 C -0.001 4.001 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.111 4.111 23 C 0.141 3.859 24 H 0.265 0.735 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.223 -13.899 5.781 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.600 4.600 8 H 0.075 0.925 9 C 0.065 3.935 10 N -0.267 5.267 11 C -0.081 4.081 12 C -0.017 4.017 13 N -0.153 5.153 14 C -0.073 4.073 15 N -0.141 5.141 16 N -0.141 5.141 17 C -0.095 4.095 18 C -0.022 4.022 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.159 4.159 22 C -0.150 4.150 23 C 0.011 3.989 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.302 -14.547 4.473 18.957 hybrid contribution 0.250 2.189 1.267 2.542 sum 11.551 -12.358 5.741 17.863 Atomic orbital electron populations 1.69928 1.06041 1.27222 1.49135 1.24936 0.94772 0.99263 0.94431 0.86616 0.79811 0.83365 0.78392 1.20393 1.21000 1.19969 1.21676 0.93240 0.91976 1.53150 0.92484 1.19814 0.90199 0.84602 0.98856 1.62723 1.16358 1.47877 0.99716 1.22235 0.96460 0.92438 0.96931 1.22310 0.97719 0.99615 0.82057 1.45999 1.29930 1.29521 1.09893 1.25098 1.00606 1.00119 0.81526 1.73946 1.07047 1.07525 1.25581 1.74401 1.19743 1.16371 1.03539 1.24348 0.94315 0.95582 0.95267 1.20161 0.94727 0.92844 0.94436 1.22432 0.92223 0.97519 1.03019 1.22473 0.98680 0.94540 1.00282 1.22333 0.94125 0.98330 1.01074 1.22152 0.98252 0.92596 1.01997 1.20633 0.90754 0.92453 0.95085 0.92522 0.94315 0.94249 0.93123 0.88403 0.89172 0.89364 0.89748 0.90163 0.91505 0.91523 0.91305 0.91699 0.91052 0.91405 0.90939 0.90358 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 13.29 55.43 0.74 -23.87 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.56 -14.25 7.66 -34.44 -0.26 -14.51 16 8 H 0.06 1.44 5.99 -52.49 -0.31 1.13 16 9 C 0.19 4.45 5.07 -4.97 -0.03 4.43 16 10 N -0.54 -10.65 4.86 -236.69 -1.15 -11.80 16 11 C 0.05 0.82 4.89 -3.55 -0.02 0.80 16 12 C 0.11 1.44 6.82 -3.91 -0.03 1.42 16 13 N -0.46 -7.61 3.12 -110.80 -0.35 -7.96 16 14 C 0.19 3.72 7.86 -155.27 -1.22 2.50 16 15 N -0.30 -6.15 12.20 32.76 0.40 -5.75 16 16 N -0.30 -5.62 12.02 32.66 0.39 -5.23 16 17 C 0.17 2.71 6.30 -155.64 -0.98 1.73 16 18 C 0.00 -0.01 3.36 -90.65 -0.30 -0.31 16 19 C -0.11 -1.17 6.35 -25.07 -0.16 -1.33 16 20 C -0.12 -1.00 6.91 -24.74 -0.17 -1.17 16 21 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 22 C -0.11 -1.14 6.45 -25.61 -0.17 -1.31 16 23 C 0.14 2.75 5.72 -4.67 -0.03 2.72 16 24 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 26 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 27 H 0.05 0.93 6.88 -51.93 -0.36 0.58 16 28 H 0.10 1.58 7.99 -51.93 -0.42 1.16 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 31 H 0.08 0.81 7.62 -51.93 -0.40 0.41 16 32 H 0.08 1.00 7.67 -51.93 -0.40 0.60 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.90 7.66 -51.93 -0.40 0.51 16 40 H 0.08 1.63 6.76 -51.92 -0.35 1.28 16 41 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -29.61 324.31 -10.14 -39.75 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.41 Total: -0.91 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -3.63 Total: -4.53 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.03 Total: -54.60 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.61 -10.14 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429416978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.403 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds