Wall clock time and date at job start Mon Mar 30 2020 01:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99864 * 2 1 4 4 H 1.48498 * 109.47250 * 269.99999 * 3 2 1 5 5 H 1.48505 * 109.47097 * 29.99785 * 3 2 1 6 6 H 1.48500 * 109.47153 * 149.99594 * 3 2 1 7 7 C 1.37878 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00322 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.46741 * 180.02562 * 9 7 2 11 11 C 1.46962 * 111.00455 * 58.23211 * 10 9 7 12 12 C 1.53463 * 109.74520 * 165.12770 * 11 10 9 13 13 N 1.46307 * 108.17887 * 49.59197 * 12 11 10 14 14 C 1.35941 * 123.86136 * 343.75743 * 13 12 11 15 15 N 1.29636 * 107.35655 * 179.73078 * 14 13 12 16 16 N 1.28981 * 109.47304 * 0.12110 * 15 14 13 17 17 C 1.30924 * 109.75617 * 359.95838 * 16 15 14 18 18 C 1.50694 * 126.48064 * 179.97438 * 17 16 15 19 19 C 1.54272 * 110.03393 * 57.19306 * 18 17 16 20 20 C 1.54892 * 104.19723 * 217.10222 * 19 18 17 21 21 C 1.54892 * 102.74639 * 37.94140 * 20 19 18 22 22 C 1.53877 * 110.03466 * 300.02393 * 18 17 16 23 23 C 1.47384 * 110.99926 * 293.95004 * 10 9 7 24 24 H 0.96999 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47195 * 60.00000 * 9 7 2 26 26 H 1.09003 * 109.46804 * 299.99833 * 9 7 2 27 27 H 1.09005 * 109.42401 * 285.20729 * 11 10 9 28 28 H 1.09000 * 109.42741 * 45.04088 * 11 10 9 29 29 H 1.08997 * 109.71457 * 289.91969 * 12 11 10 30 30 H 1.09002 * 109.72420 * 169.26852 * 12 11 10 31 31 H 1.09007 * 110.02009 * 178.63435 * 18 17 16 32 32 H 1.08992 * 110.48522 * 335.78232 * 19 18 17 33 33 H 1.09001 * 110.48483 * 98.42259 * 19 18 17 34 34 H 1.09000 * 110.75677 * 279.62705 * 20 19 18 35 35 H 1.08997 * 110.91503 * 156.33053 * 20 19 18 36 36 H 1.08997 * 110.48360 * 203.38194 * 21 20 19 37 37 H 1.08997 * 110.59697 * 80.79149 * 21 20 19 38 38 H 1.09001 * 110.03304 * 238.56687 * 22 18 17 39 39 H 1.08991 * 110.03164 * 0.02562 * 22 18 17 40 40 H 1.09010 * 109.75367 * 54.57756 * 23 10 9 41 41 H 1.08998 * 109.76149 * 293.83817 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2058 -3.6156 0.0018 11 6 3.0962 -3.5461 1.1689 12 6 3.8177 -4.8882 1.3513 13 7 4.3916 -5.2767 0.0628 14 6 4.0257 -4.7278 -1.1258 15 7 4.7337 -5.2985 -2.0497 16 7 5.5174 -6.1713 -1.5133 17 6 5.3377 -6.1897 -0.2166 18 6 6.0563 -7.0677 0.7752 19 6 7.5796 -6.8480 0.6691 20 6 8.1831 -8.2570 0.8917 21 6 7.1799 -9.1788 0.1548 22 6 5.8021 -8.5497 0.4482 23 6 2.9745 -3.6546 -1.2551 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 3.8323 -2.7566 1.0167 28 1 2.5089 -3.3261 2.0604 29 1 3.1069 -5.6459 1.6808 30 1 4.6116 -4.7816 2.0905 31 1 5.7157 -6.8448 1.7864 32 1 7.8428 -6.4721 -0.3195 33 1 7.9206 -6.1602 1.4429 34 1 8.2204 -8.4978 1.9541 35 1 9.1748 -8.3305 0.4454 36 1 7.2292 -10.1921 0.5535 37 1 7.3775 -9.1814 -0.9171 38 1 5.3390 -9.0461 1.3010 39 1 5.1594 -8.6338 -0.4280 40 1 3.4522 -2.6896 -1.4249 41 1 2.3097 -3.8885 -2.0866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429416978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:10 Heat of formation + Delta-G solvation = 52.189564 kcal Electronic energy + Delta-G solvation = -21726.580255 eV Core-core repulsion = 18641.236436 eV Total energy + Delta-G solvation = -3085.343819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.33422 -39.31334 -38.84895 -35.93596 -34.54197 -32.66985 -31.20770 -29.73892 -29.60422 -28.39635 -26.47305 -25.07197 -23.47692 -23.02043 -21.49876 -20.72437 -20.46988 -18.61375 -18.07522 -17.60051 -16.84592 -16.81105 -16.29698 -16.07806 -15.53090 -15.27880 -14.98742 -14.53970 -14.24734 -14.14040 -13.74827 -13.27480 -13.01958 -12.94124 -12.66409 -12.55352 -12.46938 -12.37753 -12.31172 -11.98930 -11.95949 -11.90576 -11.80045 -11.74697 -11.41725 -11.27368 -11.03481 -10.63569 -10.05262 -9.27343 -8.21188 -6.39212 0.82284 1.36433 1.39202 1.47129 1.52501 1.76955 2.35158 2.83006 3.06905 3.18339 3.40645 3.52674 3.67802 3.71251 4.01936 4.08487 4.15798 4.26789 4.42748 4.50807 4.55332 4.59093 4.61257 4.67495 4.73397 4.84311 4.88735 4.94813 5.01824 5.09727 5.10111 5.13738 5.27746 5.28897 5.29275 5.40257 5.53898 5.68348 5.80161 5.95761 6.08325 6.17898 6.77645 7.32965 7.69995 8.82936 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035132 B = 0.003925 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.796691 B = 7131.993191 C = 7218.065396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.952 3.048 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.563 4.563 8 H 0.056 0.944 9 C 0.204 3.796 10 N -0.539 5.539 11 C 0.047 3.953 12 C 0.111 3.889 13 N -0.463 5.463 14 C 0.179 3.821 15 N -0.331 5.331 16 N -0.334 5.334 17 C 0.193 3.807 18 C -0.004 4.004 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.110 4.110 23 C 0.150 3.850 24 H 0.267 0.733 25 H 0.012 0.988 26 H 0.026 0.974 27 H 0.034 0.966 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.973 -15.018 8.286 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.601 4.601 8 H 0.075 0.925 9 C 0.078 3.922 10 N -0.263 5.263 11 C -0.082 4.082 12 C -0.011 4.011 13 N -0.153 5.153 14 C -0.091 4.091 15 N -0.170 5.170 16 N -0.174 5.174 17 C -0.075 4.075 18 C -0.025 4.025 19 C -0.152 4.152 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.148 4.148 23 C 0.020 3.980 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.069 -15.681 6.988 21.576 hybrid contribution -0.269 2.460 0.493 2.523 sum 12.800 -13.221 7.481 19.865 Atomic orbital electron populations 1.70033 1.07410 1.28041 1.50421 1.25694 0.95491 1.02517 0.94317 0.85645 0.78782 0.79567 0.78231 1.20445 1.20563 1.19234 1.21916 0.93296 0.92809 1.52122 0.92545 1.19463 0.90498 0.85386 0.96808 1.62624 1.16918 1.45863 1.00925 1.22314 0.95800 0.94292 0.95779 1.22518 0.99175 0.97934 0.81471 1.46192 1.29857 1.29285 1.10011 1.24812 1.00934 1.00631 0.82729 1.73858 1.07851 1.08381 1.26949 1.74337 1.20606 1.17037 1.05447 1.25197 0.92782 0.94437 0.95118 1.20552 0.94905 0.92487 0.94509 1.22434 0.91595 0.99283 1.01937 1.22465 0.98445 0.92574 1.01609 1.22339 0.93569 0.99656 1.00276 1.22164 0.98691 0.92192 1.01781 1.20396 0.90698 0.92030 0.94917 0.92439 0.96961 0.95633 0.94814 0.87498 0.87003 0.85183 0.86675 0.93099 0.89906 0.89179 0.90778 0.89616 0.92928 0.88834 0.93842 0.92245 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.85 13.29 21.45 0.28 -51.56 16 2 C 0.02 1.09 5.46 84.65 0.46 1.55 16 3 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.56 -28.89 7.66 25.60 0.20 -28.69 16 8 H 0.06 2.87 5.99 -2.92 -0.02 2.85 16 9 C 0.20 9.82 5.07 85.56 0.43 10.26 16 10 N -0.54 -21.31 4.86 -902.75 -4.38 -25.70 16 11 C 0.05 1.51 4.89 86.45 0.42 1.94 16 12 C 0.11 2.64 6.82 86.57 0.59 3.23 16 13 N -0.46 -14.49 3.12 -504.45 -1.57 -16.06 16 14 C 0.18 6.87 7.86 138.11 1.09 7.96 16 15 N -0.33 -13.80 12.20 -50.26 -0.61 -14.42 16 16 N -0.33 -12.61 12.02 -50.59 -0.61 -13.21 16 17 C 0.19 5.77 6.30 138.20 0.87 6.64 16 18 C 0.00 -0.07 3.36 -10.81 -0.04 -0.11 16 19 C -0.11 -2.03 6.35 31.67 0.20 -1.83 16 20 C -0.11 -1.47 6.91 31.89 0.22 -1.25 16 21 C -0.12 -1.83 6.83 31.67 0.22 -1.61 16 22 C -0.11 -1.95 6.45 31.32 0.20 -1.75 16 23 C 0.15 6.02 5.72 85.49 0.49 6.51 16 24 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.01 0.65 8.12 -2.39 -0.02 0.63 16 26 H 0.03 1.30 8.12 -2.39 -0.02 1.28 16 27 H 0.03 1.21 6.88 -2.38 -0.02 1.19 16 28 H 0.11 3.26 7.99 -2.39 -0.02 3.24 16 29 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.13 2.11 8.03 -2.39 -0.02 2.09 16 31 H 0.12 1.58 7.62 -2.38 -0.02 1.56 16 32 H 0.05 1.22 7.67 -2.39 -0.02 1.20 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.04 1.03 7.66 -2.39 -0.02 1.02 16 40 H 0.06 2.58 6.76 -2.38 -0.02 2.57 16 41 H 0.10 3.87 8.14 -2.39 -0.02 3.86 16 Total: -1.00 -66.09 324.31 1.50 -64.59 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.01 Total: 9.52 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.35 Total: 2.84 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -6.89 Total: -120.95 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -66.09 1.50 -64.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429416978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.776 kcal (2) G-P(sol) polarization free energy of solvation -66.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds