Wall clock time and date at job start Mon Mar 30 2020 02:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00436 * 2 1 4 4 C 1.38403 * 120.00160 * 179.97438 * 2 1 3 5 5 N 1.32489 * 119.21855 * 0.02562 * 4 2 1 6 6 C 1.32276 * 120.74800 * 179.97438 * 5 4 2 7 7 C 1.38604 * 119.19129 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.71803 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.47272 * 89.99944 * 8 7 6 10 10 C 1.46893 * 111.00098 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47250 * 185.37571 * 10 9 8 12 12 C 1.50701 * 115.55139 * 294.80834 * 11 10 9 13 13 H 1.07998 * 119.99931 * 95.20118 * 12 11 10 14 14 C 1.37881 * 119.99675 * 274.92507 * 12 11 10 15 15 N 1.31509 * 120.00118 * 355.41870 * 14 12 11 16 16 Si 1.86797 * 119.99851 * 175.42112 * 14 12 11 17 17 H 1.48500 * 109.47305 * 59.99777 * 16 14 12 18 18 H 1.48502 * 109.46877 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47169 * 299.99984 * 16 14 12 20 20 C 1.53005 * 117.49771 * 80.47079 * 11 10 9 21 21 C 1.52998 * 117.50158 * 149.12935 * 11 10 9 22 22 C 1.38603 * 118.56129 * 0.26804 * 7 6 5 23 23 N 1.32272 * 119.19625 * 359.45174 * 22 7 6 24 24 H 1.08999 * 109.46819 * 270.00210 * 1 2 3 25 25 H 1.09000 * 109.46762 * 29.99807 * 1 2 3 26 26 H 1.08996 * 109.46982 * 149.99922 * 1 2 3 27 27 H 1.09000 * 109.47029 * 270.00216 * 3 2 1 28 28 H 1.09001 * 109.46801 * 29.99789 * 3 2 1 29 29 H 1.09004 * 109.47619 * 149.99521 * 3 2 1 30 30 H 1.08002 * 120.40605 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47382 * 329.99986 * 8 7 6 32 32 H 1.08995 * 109.47248 * 209.99521 * 8 7 6 33 33 H 1.00901 * 110.99671 * 303.95517 * 9 8 7 34 34 H 1.09004 * 109.46845 * 65.38026 * 10 9 8 35 35 H 1.08997 * 109.47456 * 305.38043 * 10 9 8 36 36 H 0.96998 * 120.00611 * 185.00609 * 15 14 12 37 37 H 1.08998 * 117.50096 * 215.00821 * 20 11 10 38 38 H 1.08999 * 117.49296 * 0.02838 * 20 11 10 39 39 H 1.09004 * 117.49634 * 359.97438 * 21 11 10 40 40 H 1.08994 * 117.49846 * 144.97788 * 21 11 10 41 41 H 1.08003 * 120.40097 * 179.72138 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 7 1.4790 -2.3368 0.0005 6 6 2.1096 -3.4996 0.0005 7 6 3.4955 -3.5170 0.0011 8 6 4.2490 -4.8221 0.0017 9 7 4.4944 -5.2466 -1.3832 10 6 5.2291 -6.5180 -1.4218 11 6 5.5824 -6.8591 -2.8708 12 6 4.4111 -7.1374 -3.7772 13 1 4.0025 -6.3472 -4.3896 14 6 3.8648 -8.4023 -3.8290 15 7 4.4207 -9.3867 -3.1570 16 14 2.3351 -8.7178 -4.8536 17 1 2.6146 -8.3893 -6.2746 18 1 1.9515 -10.1481 -4.7428 19 1 1.2234 -7.8668 -4.3583 20 6 6.8002 -6.1641 -3.4834 21 6 6.8696 -7.6487 -3.1171 22 6 4.1734 -2.3081 0.0073 23 7 3.4819 -1.1805 0.0015 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 2.3792 1.5833 -1.0277 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1384 0.5139 30 1 1.5514 -4.4242 0.0009 31 1 3.6598 -5.5817 0.5154 32 1 5.2012 -4.6917 0.5157 33 1 3.6301 -5.3121 -1.8998 34 1 4.6075 -7.3096 -1.0034 35 1 6.1441 -6.4268 -0.8365 36 1 4.0807 -10.2903 -3.2502 37 1 6.7540 -5.9083 -4.5420 38 1 7.3497 -5.4643 -2.8539 39 1 7.4649 -7.9249 -2.2467 40 1 6.8690 -8.3699 -3.9344 41 1 5.2532 -2.2870 0.0124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430027595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:08 Heat of formation + Delta-G solvation = 90.104532 kcal Electronic energy + Delta-G solvation = -20832.172422 eV Core-core repulsion = 17748.472720 eV Total energy + Delta-G solvation = -3083.699703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86803 -37.23985 -36.65799 -34.58381 -33.54686 -31.89750 -31.09254 -28.35298 -27.07042 -25.56067 -24.48024 -24.21135 -22.71582 -21.22189 -20.83891 -19.04680 -17.70688 -17.59626 -16.01938 -15.70102 -15.16337 -14.70010 -14.59588 -14.51223 -14.28672 -13.91597 -13.51866 -13.40606 -13.25624 -12.73780 -12.63485 -12.39087 -12.11416 -11.88983 -11.43689 -11.33338 -10.91628 -10.88518 -10.63759 -10.61776 -10.45481 -10.10062 -10.00685 -9.31836 -8.94722 -8.82428 -8.37832 -8.09309 -7.79149 -7.51038 -6.00270 -4.07722 1.30786 1.33310 2.65478 3.30032 3.35383 3.38379 4.00120 4.29041 4.40822 4.62820 4.90519 4.94735 5.09929 5.13066 5.14791 5.23622 5.27593 5.32515 5.49946 5.65010 5.66456 5.68147 5.82424 5.95580 6.14054 6.25135 6.40190 6.49682 6.58447 6.76473 6.83457 6.86207 6.94480 6.95755 7.23207 7.43978 7.51920 7.63155 7.89495 7.96762 8.22358 8.36601 8.52127 8.95876 9.58110 11.06713 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.003948 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.581783 B = 7090.716696 C = 7852.469978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.599 5.599 3 C 0.106 3.894 4 C 0.552 3.448 5 N -0.569 5.569 6 C 0.195 3.805 7 C -0.234 4.234 8 C 0.112 3.888 9 N -0.677 5.677 10 C 0.106 3.894 11 C 0.047 3.953 12 C -0.493 4.493 13 H 0.058 0.942 14 C 0.070 3.930 15 N -0.880 5.880 16 Si 0.886 3.114 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.201 4.201 21 C -0.156 4.156 22 C 0.209 3.791 23 N -0.571 5.571 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.164 0.836 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.347 0.653 34 H 0.032 0.968 35 H 0.040 0.960 36 H 0.259 0.741 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 15.266 8.780 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.318 5.318 3 C -0.038 4.038 4 C 0.196 3.804 5 N -0.291 5.291 6 C 0.027 3.973 7 C -0.242 4.242 8 C -0.018 4.018 9 N -0.308 5.308 10 C -0.023 4.023 11 C 0.046 3.954 12 C -0.531 4.531 13 H 0.076 0.924 14 C -0.133 4.133 15 N -0.517 5.517 16 Si 0.714 3.286 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.238 4.238 21 C -0.194 4.194 22 C 0.041 3.959 23 N -0.292 5.292 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.181 0.819 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.166 0.834 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.494 16.506 8.806 19.240 hybrid contribution -1.035 -1.787 -0.400 2.103 sum -5.528 14.719 8.406 17.829 Atomic orbital electron populations 1.21569 0.77831 1.03034 1.01364 1.45760 1.05607 1.01979 1.78444 1.21569 0.97480 0.83185 1.01538 1.19233 0.85500 0.86227 0.89408 1.67855 1.40991 0.97871 1.22371 1.22858 0.91479 0.95017 0.87920 1.21315 0.95685 0.97978 1.09174 1.20578 0.98015 0.90813 0.92403 1.60523 1.27207 1.33329 1.09780 1.21468 0.95508 0.87755 0.97557 1.18724 0.87894 0.97331 0.91403 1.20434 1.13402 0.95418 1.23820 0.92352 1.24991 0.96809 0.96335 0.95140 1.69989 1.40953 0.99850 1.40922 0.86758 0.83884 0.77054 0.80880 1.20329 1.21398 1.20203 1.22868 1.06392 0.94869 0.99709 1.22498 1.03012 0.92516 1.01345 1.22808 1.00163 0.85965 0.86955 1.67883 1.06787 1.32127 1.22421 0.93351 0.91611 0.90145 0.93226 0.91674 0.90208 0.81888 0.94929 0.90782 0.83393 0.95022 0.94127 0.93079 0.91027 0.91759 0.92347 0.90044 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.00 10.44 59.84 0.62 1.62 16 2 N -0.60 -7.25 3.37 -191.90 -0.65 -7.90 16 3 C 0.11 0.98 10.44 59.85 0.62 1.60 16 4 C 0.55 8.20 8.17 -322.81 -2.64 5.56 16 5 N -0.57 -8.60 9.11 -13.93 -0.13 -8.73 16 6 C 0.19 2.78 11.00 -17.23 -0.19 2.59 16 7 C -0.23 -3.33 5.43 -104.35 -0.57 -3.90 16 8 C 0.11 1.67 5.85 -4.97 -0.03 1.64 16 9 N -0.68 -12.63 6.46 -115.06 -0.74 -13.37 16 10 C 0.11 2.26 5.54 -3.83 -0.02 2.24 16 11 C 0.05 1.14 1.65 -155.66 -0.26 0.88 16 12 C -0.49 -13.08 8.33 -34.44 -0.29 -13.37 16 13 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 14 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 15 N -0.88 -24.46 12.65 55.43 0.70 -23.76 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.20 -4.49 9.96 -26.69 -0.27 -4.76 16 21 C -0.16 -3.69 9.14 -26.69 -0.24 -3.93 16 22 C 0.21 2.92 11.00 -17.23 -0.19 2.73 16 23 N -0.57 -8.47 9.11 -13.93 -0.13 -8.60 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 26 H 0.08 0.87 7.33 -51.93 -0.38 0.48 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 29 H 0.08 0.81 7.33 -51.93 -0.38 0.42 16 30 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.03 0.48 8.10 -51.93 -0.42 0.05 16 32 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.35 6.95 8.30 -39.29 -0.33 6.62 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 36 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 37 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 41 H 0.17 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -29.80 346.58 -10.81 -40.61 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.54 Total: 6.02 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -3.53 Total: -5.30 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.94 Total: -62.36 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.80 -10.81 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430027595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.715 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds