Wall clock time and date at job start Mon Mar 30 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35739 * 116.99961 * 2 1 4 4 C 1.39282 * 120.84687 * 359.97438 * 3 2 1 5 5 C 1.37954 * 119.09355 * 180.02562 * 4 3 2 6 6 N 1.31980 * 120.82130 * 0.02562 * 5 4 3 7 7 C 1.31945 * 121.86455 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.59025 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.47154 * 274.99898 * 8 7 6 10 10 C 1.46846 * 110.99978 * 45.78898 * 9 8 7 11 11 C 1.53039 * 109.52487 * 185.83826 * 10 9 8 12 12 C 1.53122 * 109.27612 * 300.82440 * 11 10 9 13 13 C 1.50696 * 109.57278 * 177.59304 * 12 11 10 14 14 H 1.08009 * 119.99622 * 245.70931 * 13 12 11 15 15 C 1.37873 * 120.00642 * 65.71329 * 13 12 11 16 16 N 1.31515 * 119.99863 * 9.54847 * 15 13 12 17 17 Si 1.86807 * 120.00309 * 189.55569 * 15 13 12 18 18 H 1.48504 * 109.46985 * 94.98547 * 17 15 13 19 19 H 1.48498 * 109.46940 * 214.98761 * 17 15 13 20 20 H 1.48493 * 109.46802 * 334.98884 * 17 15 13 21 21 C 1.53114 * 109.16569 * 57.65367 * 12 11 10 22 22 C 1.46847 * 110.99936 * 169.99893 * 9 8 7 23 23 C 1.37990 * 120.82161 * 359.97438 * 7 6 5 24 24 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47473 * 300.00412 * 1 2 3 26 26 H 1.08998 * 109.47177 * 60.00067 * 1 2 3 27 27 H 1.08003 * 120.45614 * 0.05122 * 4 3 2 28 28 H 1.07998 * 119.59250 * 179.71965 * 5 4 3 29 29 H 1.08999 * 109.46778 * 35.00089 * 8 7 6 30 30 H 1.08996 * 109.46800 * 154.99799 * 8 7 6 31 31 H 1.08998 * 109.46317 * 305.85573 * 10 9 8 32 32 H 1.09007 * 109.46460 * 65.82288 * 10 9 8 33 33 H 1.08994 * 109.50374 * 180.88226 * 11 10 9 34 34 H 1.08993 * 109.50177 * 60.75885 * 11 10 9 35 35 H 1.09012 * 109.52041 * 297.74300 * 12 11 10 36 36 H 0.97004 * 120.00109 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.50721 * 182.40990 * 21 12 11 38 38 H 1.08992 * 109.53666 * 62.30145 * 21 12 11 39 39 H 1.09007 * 109.46018 * 294.17699 * 22 9 8 40 40 H 1.08993 * 109.46351 * 54.15496 * 22 9 8 41 41 H 1.08004 * 120.45551 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3886 -0.0005 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6457 -0.0016 7 6 4.0231 2.5510 -0.0011 8 6 5.5257 2.6651 -0.0023 9 7 6.0039 2.8212 -1.3825 10 6 5.2000 3.8125 -2.1089 11 6 5.6304 3.8432 -3.5772 12 6 7.1164 4.2030 -3.6610 13 6 7.5617 4.1773 -5.1004 14 1 8.2811 3.4422 -5.4301 15 6 7.0509 5.0922 -5.9966 16 7 6.3244 6.1001 -5.5652 17 14 7.3904 4.9000 -7.8234 18 1 6.2627 4.1757 -8.4630 19 1 7.5328 6.2415 -8.4442 20 1 8.6456 4.1300 -8.0152 21 6 7.9267 3.1829 -2.8564 22 6 7.4297 3.1714 -1.4090 23 6 3.4345 1.3029 0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2244 2.3566 -0.0001 28 1 1.4008 4.5174 -0.0061 29 1 5.8247 3.5325 0.5862 30 1 5.9588 1.7643 0.4326 31 1 4.1459 3.5426 -2.0449 32 1 5.3502 4.7971 -1.6658 33 1 5.0444 4.5901 -4.1126 34 1 5.4677 2.8628 -4.0246 35 1 7.2736 5.1999 -3.2488 36 1 5.9647 6.7435 -6.1957 37 1 8.9812 3.4581 -2.8769 38 1 7.8007 2.1919 -3.2923 39 1 7.5694 4.1589 -0.9691 40 1 7.9950 2.4358 -0.8369 41 1 4.0432 0.4106 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543808949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:58 Heat of formation + Delta-G solvation = -1.379278 kcal Electronic energy + Delta-G solvation = -21446.839477 eV Core-core repulsion = 18326.879988 eV Total energy + Delta-G solvation = -3119.959490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76002 -38.79764 -37.67277 -34.11775 -32.14535 -31.58044 -30.49677 -29.71365 -27.99262 -26.57826 -24.49241 -23.54915 -22.16249 -21.83961 -20.79626 -18.52051 -18.01070 -17.04654 -16.34035 -16.07394 -15.75726 -15.38041 -14.98175 -14.43873 -14.38417 -13.94253 -13.66067 -13.39262 -13.03672 -12.82912 -12.49096 -12.28297 -11.91288 -11.78969 -11.66558 -11.27495 -11.18510 -10.96360 -10.71540 -10.39186 -10.14131 -10.00700 -9.46373 -9.35574 -9.12403 -8.94285 -8.80282 -8.61774 -8.22141 -7.69477 -5.93097 -3.93763 1.06928 1.33991 2.92466 3.35975 3.42976 3.46268 3.72758 4.29931 4.51592 4.53415 4.68600 4.79695 4.83144 4.86370 5.12212 5.14343 5.20963 5.39010 5.50053 5.72734 5.77482 5.79272 5.91224 5.99112 6.05270 6.20349 6.37488 6.41541 6.48379 6.71057 6.71664 6.92327 7.05636 7.12728 7.19758 7.45113 7.65540 7.72346 7.88909 8.08457 8.10502 8.13859 8.55561 9.10279 9.68882 11.16040 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022498 B = 0.004121 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.233068 B = 6793.294313 C = 7270.904418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.164 3.836 4 C -0.269 4.269 5 C 0.138 3.862 6 N -0.497 5.497 7 C 0.176 3.824 8 C 0.100 3.900 9 N -0.528 5.528 10 C 0.062 3.938 11 C -0.099 4.099 12 C 0.046 3.954 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.885 3.115 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.105 4.105 22 C 0.060 3.940 23 C -0.187 4.187 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.157 0.843 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.028 0.972 36 H 0.258 0.742 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 -9.169 13.870 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.111 3.889 4 C -0.290 4.290 5 C -0.020 4.020 6 N -0.210 5.210 7 C 0.040 3.960 8 C -0.028 4.028 9 N -0.254 5.254 10 C -0.065 4.065 11 C -0.137 4.137 12 C 0.027 3.973 13 C -0.550 4.550 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.713 3.287 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.143 4.143 22 C -0.067 4.067 23 C -0.208 4.208 24 H 0.120 0.880 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.153 0.847 28 H 0.174 0.826 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.525 -8.882 13.566 19.332 hybrid contribution -0.714 0.049 -0.690 0.994 sum -11.239 -8.833 12.877 19.239 Atomic orbital electron populations 1.23106 0.78010 1.04155 1.01605 1.86063 1.21711 1.26528 1.88022 1.19307 0.92422 0.84426 0.92739 1.22158 1.01272 0.93386 1.12162 1.22536 0.90118 0.96922 0.92411 1.67668 1.06860 1.32007 1.14485 1.20968 0.96438 0.87332 0.91256 1.21048 0.87636 1.01762 0.92367 1.62231 1.03686 1.48971 1.10524 1.22268 0.95806 0.92025 0.96441 1.21603 1.00336 1.00446 0.91336 1.18699 0.90522 0.93608 0.94423 1.21191 1.24797 1.15142 0.93887 0.92755 1.24962 0.95523 0.94821 0.98521 1.69980 1.35907 1.12880 1.34020 0.86698 0.78558 0.77288 0.86173 1.20806 1.21432 1.19925 1.21666 0.98899 1.01168 0.92557 1.22156 0.87303 0.97894 0.99372 1.21261 0.91714 0.99857 1.07945 0.88018 0.92503 0.92324 0.84654 0.82591 0.93107 0.89565 0.92535 0.95254 0.90926 0.93901 0.95367 0.93192 0.92968 0.92560 0.95433 0.92260 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.18 16 2 O -0.31 -3.58 10.51 -18.92 -0.20 -3.77 16 3 C 0.16 2.10 6.74 -38.82 -0.26 1.84 16 4 C -0.27 -3.07 9.11 -39.30 -0.36 -3.43 16 5 C 0.14 1.77 11.17 -17.59 -0.20 1.57 16 6 N -0.50 -7.84 8.66 -9.55 -0.08 -7.92 16 7 C 0.18 2.70 4.91 -82.63 -0.41 2.29 16 8 C 0.10 1.53 5.59 -4.98 -0.03 1.50 16 9 N -0.53 -9.80 4.80 -236.11 -1.13 -10.94 16 10 C 0.06 1.31 4.71 -3.83 -0.02 1.29 16 11 C -0.10 -2.43 5.19 -26.65 -0.14 -2.57 16 12 C 0.05 1.18 2.03 -91.65 -0.19 1.00 16 13 C -0.51 -14.43 8.48 -34.44 -0.29 -14.72 16 14 H 0.05 1.52 7.77 -52.48 -0.41 1.11 16 15 C 0.06 1.79 5.23 -17.82 -0.09 1.70 16 16 N -0.89 -26.21 12.20 55.43 0.68 -25.53 16 17 Si 0.88 21.75 29.55 -169.99 -5.02 16.73 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.11 -2.25 5.32 -26.65 -0.14 -2.40 16 22 C 0.06 1.11 5.42 -3.83 -0.02 1.08 16 23 C -0.19 -2.60 9.68 -39.30 -0.38 -2.98 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 26 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 27 H 0.14 1.13 6.47 -52.48 -0.34 0.79 16 28 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.09 1.10 8.04 -51.93 -0.42 0.69 16 31 H 0.06 1.18 5.76 -51.93 -0.30 0.88 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.98 7.00 -51.93 -0.36 1.61 16 34 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.03 0.80 8.09 -51.92 -0.42 0.38 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 41 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -31.58 328.48 -8.74 -40.32 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.41 Total: -1.20 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.53 Total: -12.64 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.54 Total: -44.39 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.58 -8.74 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543808949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.943 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds