Wall clock time and date at job start Mon Mar 30 2020 01:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35739 * 116.99961 * 2 1 4 4 C 1.39282 * 120.84687 * 359.97438 * 3 2 1 5 5 C 1.37954 * 119.09355 * 180.02562 * 4 3 2 6 6 N 1.31980 * 120.82130 * 0.02562 * 5 4 3 7 7 C 1.31945 * 121.86455 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.59025 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.47154 * 274.99898 * 8 7 6 10 10 C 1.46846 * 110.99978 * 45.78898 * 9 8 7 11 11 C 1.53039 * 109.52487 * 185.83826 * 10 9 8 12 12 C 1.53122 * 109.27612 * 300.82440 * 11 10 9 13 13 C 1.50696 * 109.57278 * 177.59304 * 12 11 10 14 14 H 1.08009 * 119.99622 * 245.70931 * 13 12 11 15 15 C 1.37873 * 120.00642 * 65.71329 * 13 12 11 16 16 N 1.31515 * 119.99863 * 9.54847 * 15 13 12 17 17 Si 1.86807 * 120.00309 * 189.55569 * 15 13 12 18 18 H 1.48504 * 109.46985 * 94.98547 * 17 15 13 19 19 H 1.48498 * 109.46940 * 214.98761 * 17 15 13 20 20 H 1.48493 * 109.46802 * 334.98884 * 17 15 13 21 21 C 1.53114 * 109.16569 * 57.65367 * 12 11 10 22 22 C 1.46847 * 110.99936 * 169.99893 * 9 8 7 23 23 C 1.37990 * 120.82161 * 359.97438 * 7 6 5 24 24 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47473 * 300.00412 * 1 2 3 26 26 H 1.08998 * 109.47177 * 60.00067 * 1 2 3 27 27 H 1.08003 * 120.45614 * 0.05122 * 4 3 2 28 28 H 1.07998 * 119.59250 * 179.71965 * 5 4 3 29 29 H 1.08999 * 109.46778 * 35.00089 * 8 7 6 30 30 H 1.08996 * 109.46800 * 154.99799 * 8 7 6 31 31 H 1.08998 * 109.46317 * 305.85573 * 10 9 8 32 32 H 1.09007 * 109.46460 * 65.82288 * 10 9 8 33 33 H 1.08994 * 109.50374 * 180.88226 * 11 10 9 34 34 H 1.08993 * 109.50177 * 60.75885 * 11 10 9 35 35 H 1.09012 * 109.52041 * 297.74300 * 12 11 10 36 36 H 0.97004 * 120.00109 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.50721 * 182.40990 * 21 12 11 38 38 H 1.08992 * 109.53666 * 62.30145 * 21 12 11 39 39 H 1.09007 * 109.46018 * 294.17699 * 22 9 8 40 40 H 1.08993 * 109.46351 * 54.15496 * 22 9 8 41 41 H 1.08004 * 120.45551 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3886 -0.0005 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6457 -0.0016 7 6 4.0231 2.5510 -0.0011 8 6 5.5257 2.6651 -0.0023 9 7 6.0039 2.8212 -1.3825 10 6 5.2000 3.8125 -2.1089 11 6 5.6304 3.8432 -3.5772 12 6 7.1164 4.2030 -3.6610 13 6 7.5617 4.1773 -5.1004 14 1 8.2811 3.4422 -5.4301 15 6 7.0509 5.0922 -5.9966 16 7 6.3244 6.1001 -5.5652 17 14 7.3904 4.9000 -7.8234 18 1 6.2627 4.1757 -8.4630 19 1 7.5328 6.2415 -8.4442 20 1 8.6456 4.1300 -8.0152 21 6 7.9267 3.1829 -2.8564 22 6 7.4297 3.1714 -1.4090 23 6 3.4345 1.3029 0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2244 2.3566 -0.0001 28 1 1.4008 4.5174 -0.0061 29 1 5.8247 3.5325 0.5862 30 1 5.9588 1.7643 0.4326 31 1 4.1459 3.5426 -2.0449 32 1 5.3502 4.7971 -1.6658 33 1 5.0444 4.5901 -4.1126 34 1 5.4677 2.8628 -4.0246 35 1 7.2736 5.1999 -3.2488 36 1 5.9647 6.7435 -6.1957 37 1 8.9812 3.4581 -2.8769 38 1 7.8007 2.1919 -3.2923 39 1 7.5694 4.1589 -0.9691 40 1 7.9950 2.4358 -0.8369 41 1 4.0432 0.4106 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543808949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:57 Heat of formation + Delta-G solvation = -22.096698 kcal Electronic energy + Delta-G solvation = -21447.737852 eV Core-core repulsion = 18326.879988 eV Total energy + Delta-G solvation = -3120.857864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.73609 -39.99336 -38.97243 -35.87085 -33.82075 -32.56689 -31.97904 -31.42853 -28.91520 -27.96092 -26.14134 -24.57666 -23.75346 -23.43700 -22.09302 -20.34776 -18.92096 -18.43494 -17.99650 -17.12837 -16.72743 -16.69845 -16.33984 -16.04892 -15.56374 -15.26330 -14.82130 -14.70480 -14.60652 -14.42296 -13.99406 -13.80830 -13.19068 -13.00197 -12.97085 -12.86535 -12.58554 -12.42416 -12.30683 -12.11773 -12.02785 -11.89010 -11.35158 -10.74402 -10.70080 -10.46007 -10.40770 -10.10981 -9.84063 -9.19600 -8.11118 -6.19695 0.07380 0.35924 1.40226 1.41658 1.52060 2.16096 2.44364 2.65769 3.18423 3.22201 3.35957 3.68629 3.90249 4.11773 4.17385 4.23567 4.33244 4.34553 4.36919 4.39703 4.49519 4.57910 4.71659 4.73075 4.79141 4.82572 4.87287 4.94167 5.00311 5.07310 5.11764 5.23702 5.31598 5.50237 5.54002 5.62995 5.93939 5.98777 6.19950 6.23100 6.27815 6.40502 6.92803 7.07559 7.46872 8.97546 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022498 B = 0.004121 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.233068 B = 6793.294313 C = 7270.904418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.159 3.841 4 C -0.258 4.258 5 C 0.125 3.875 6 N -0.532 5.532 7 C 0.155 3.845 8 C 0.102 3.898 9 N -0.532 5.532 10 C 0.084 3.916 11 C -0.088 4.088 12 C 0.043 3.957 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.013 3.987 16 N -0.921 5.921 17 Si 0.951 3.049 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.265 1.265 21 C -0.098 4.098 22 C 0.065 3.935 23 C -0.196 4.196 24 H 0.123 0.877 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.169 0.831 28 H 0.179 0.821 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.009 0.991 33 H 0.037 0.963 34 H 0.034 0.966 35 H -0.009 1.009 36 H 0.259 0.741 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.099 0.901 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.717 -10.887 14.499 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.105 3.895 4 C -0.278 4.278 5 C -0.032 4.032 6 N -0.246 5.246 7 C 0.019 3.981 8 C -0.025 4.025 9 N -0.257 5.257 10 C -0.044 4.044 11 C -0.127 4.127 12 C 0.025 3.975 13 C -0.571 4.571 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.560 5.560 17 Si 0.776 3.224 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.136 4.136 22 C -0.062 4.062 23 C -0.218 4.218 24 H 0.141 0.859 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.186 0.814 28 H 0.196 0.804 29 H 0.067 0.933 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.027 0.973 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.009 0.991 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.117 0.883 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.366 -10.619 14.209 21.068 hybrid contribution -0.557 0.549 -0.847 1.153 sum -11.923 -10.070 13.362 20.545 Atomic orbital electron populations 1.23455 0.75696 1.06059 1.02676 1.86054 1.24102 1.25879 1.87710 1.19443 0.92381 0.85412 0.92269 1.22465 1.02878 0.92311 1.10173 1.22996 0.89510 0.98590 0.92099 1.67615 1.08424 1.32771 1.15765 1.20955 0.96343 0.87897 0.92876 1.21144 0.88311 1.03032 0.90015 1.62161 1.03426 1.47314 1.12812 1.21882 0.96402 0.91912 0.94241 1.21378 0.99304 0.98484 0.93520 1.18660 0.91868 0.93003 0.94007 1.21581 1.24954 1.15143 0.95455 0.92830 1.25766 0.95356 0.94433 1.03034 1.70114 1.36826 1.13585 1.35479 0.85654 0.78718 0.77399 0.80586 1.20298 1.20977 1.18965 1.21535 0.98593 0.99411 0.94092 1.22120 0.87632 0.98982 0.97479 1.21380 0.92751 0.99606 1.08018 0.85895 0.90911 0.91665 0.81380 0.80387 0.93327 0.86519 0.92214 0.97253 0.94465 0.94745 0.99115 0.93163 0.92426 0.92650 0.96025 0.88277 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.84 113.37 1.12 1.28 16 2 O -0.33 -6.73 10.51 -90.63 -0.95 -7.69 16 3 C 0.16 3.77 6.74 22.76 0.15 3.92 16 4 C -0.26 -5.31 9.11 22.45 0.20 -5.10 16 5 C 0.12 3.05 11.17 84.60 0.95 4.00 16 6 N -0.53 -16.55 8.66 -184.12 -1.59 -18.15 16 7 C 0.15 4.62 4.91 42.48 0.21 4.82 16 8 C 0.10 2.99 5.59 85.56 0.48 3.47 16 9 N -0.53 -19.31 4.80 -900.92 -4.32 -23.63 16 10 C 0.08 3.61 4.71 86.33 0.41 4.02 16 11 C -0.09 -4.51 5.19 30.65 0.16 -4.35 16 12 C 0.04 2.29 2.03 -11.46 -0.02 2.27 16 13 C -0.53 -30.69 8.48 25.60 0.22 -30.48 16 14 H 0.05 3.01 7.77 -2.91 -0.02 2.99 16 15 C 0.01 0.73 5.23 84.65 0.44 1.17 16 16 N -0.92 -55.94 12.20 21.45 0.26 -55.68 16 17 Si 0.95 45.10 29.55 68.60 2.03 47.13 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 C -0.10 -4.21 5.32 30.65 0.16 -4.05 16 22 C 0.07 2.31 5.42 86.33 0.47 2.78 16 23 C -0.20 -5.21 9.68 22.45 0.22 -4.99 16 24 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.58 7.71 -2.39 -0.02 0.57 16 26 H 0.06 0.65 7.71 -2.39 -0.02 0.63 16 27 H 0.17 2.21 6.47 -2.91 -0.02 2.19 16 28 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.05 1.44 8.08 -2.39 -0.02 1.42 16 30 H 0.12 2.67 8.04 -2.39 -0.02 2.65 16 31 H 0.06 2.54 5.76 -2.39 -0.01 2.53 16 32 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.04 2.12 7.00 -2.39 -0.02 2.10 16 34 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 35 H -0.01 -0.56 8.09 -2.38 -0.02 -0.58 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.18 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.10 2.78 8.12 -2.39 -0.02 2.76 16 41 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -70.18 328.48 1.57 -68.60 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.00 Total: 10.65 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 5.16 Total: -21.24 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -5.66 Total: -97.46 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.95 Total: -7.69 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -70.18 1.57 -68.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543808949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.504 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds