Wall clock time and date at job start Mon Mar 30 2020 01:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00070 * 2 1 4 4 C 1.53000 * 109.47177 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47077 * 66.96887 * 4 3 2 6 6 C 1.36944 * 119.99806 * 92.09686 * 5 4 3 7 7 H 1.07994 * 119.99739 * 214.50378 * 6 5 4 8 8 C 1.38810 * 119.99943 * 34.22614 * 6 5 4 9 9 N 1.31616 * 120.00287 * 215.44580 * 8 6 5 10 10 Si 1.86799 * 119.99899 * 35.44451 * 8 6 5 11 11 H 1.48499 * 109.47070 * 93.35847 * 10 8 6 12 12 H 1.48504 * 109.47227 * 213.35282 * 10 8 6 13 13 H 1.48496 * 109.47314 * 333.35627 * 10 8 6 14 14 C 1.46493 * 120.00264 * 272.09551 * 5 4 3 15 15 C 1.50695 * 109.47376 * 270.00143 * 14 5 4 16 16 C 1.38228 * 119.59785 * 94.72853 * 15 14 5 17 17 C 1.38579 * 118.98894 * 179.71588 * 16 15 14 18 18 C 1.38752 * 118.55379 * 0.57735 * 17 16 15 19 19 C 1.38169 * 119.35236 * 359.66925 * 18 17 16 20 20 N 1.31691 * 119.59993 * 275.00145 * 15 14 5 21 21 C 1.51477 * 109.58453 * 180.02562 * 19 18 17 22 22 C 1.54334 * 105.21410 * 342.77965 * 21 19 18 23 23 C 1.51228 * 130.68793 * 179.66246 * 18 17 16 24 24 H 1.09005 * 109.46675 * 60.00349 * 1 2 3 25 25 H 1.08994 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47028 * 300.01194 * 1 2 3 27 27 H 1.08991 * 109.47586 * 59.98930 * 3 2 1 28 28 H 1.09008 * 109.46638 * 299.99128 * 3 2 1 29 29 H 1.08997 * 109.46975 * 306.97237 * 4 3 2 30 30 H 1.08999 * 109.47125 * 186.96624 * 4 3 2 31 31 H 0.96995 * 120.00791 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47289 * 30.00223 * 14 5 4 33 33 H 1.08996 * 109.47302 * 149.99664 * 14 5 4 34 34 H 1.07994 * 120.51069 * 0.02562 * 16 15 14 35 35 H 1.07993 * 120.72803 * 180.25788 * 17 16 15 36 36 H 1.09001 * 110.29346 * 101.71631 * 21 19 18 37 37 H 1.09008 * 110.29300 * 223.84885 * 21 19 18 38 38 H 1.09000 * 110.82498 * 268.12362 * 22 21 19 39 39 H 1.08999 * 110.99325 * 144.64994 * 22 21 19 40 40 H 1.08997 * 110.31078 * 316.04477 * 23 18 17 41 41 H 1.09002 * 110.30971 * 78.12757 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9802 0.6072 -1.2702 6 6 4.3155 1.4269 -2.3147 7 1 4.1073 1.1213 -3.3293 8 6 4.9178 2.6532 -2.0689 9 7 4.6381 3.6885 -2.8319 10 14 6.1252 2.8340 -0.6551 11 1 7.5070 2.6157 -1.1532 12 1 6.0156 4.1996 -0.0821 13 1 5.8129 1.8304 0.3940 14 6 4.0661 -0.8472 -1.4238 15 6 5.4406 -1.3146 -1.0200 16 6 5.6583 -1.7613 0.2699 17 6 6.9258 -2.1938 0.6260 18 6 7.9335 -2.1500 -0.3268 19 6 7.6457 -1.6864 -1.5962 20 7 6.4211 -1.2875 -1.8987 21 6 8.8961 -1.7342 -2.4499 22 6 10.0648 -1.8597 -1.4497 23 6 9.3920 -2.5398 -0.2380 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8898 27 1 1.6886 1.8465 0.8898 28 1 1.6887 1.8463 -0.8902 29 1 3.8485 0.5400 0.8219 30 1 3.9782 2.1729 0.1253 31 1 5.0592 4.5453 -2.6604 32 1 3.3192 -1.3243 -0.7893 33 1 3.8827 -1.1141 -2.4645 34 1 4.8518 -1.7777 0.9879 35 1 7.1262 -2.5523 1.6247 36 1 8.8696 -2.6003 -3.1110 37 1 8.9926 -0.8168 -3.0308 38 1 10.4498 -0.8768 -1.1783 39 1 10.8591 -2.4870 -1.8540 40 1 9.8261 -2.1714 0.6915 41 1 9.4988 -3.6227 -0.3018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556786658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:45 Heat of formation + Delta-G solvation = 13.115025 kcal Electronic energy + Delta-G solvation = -21943.801341 eV Core-core repulsion = 18824.470372 eV Total energy + Delta-G solvation = -3119.330969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19992 -37.57865 -36.41311 -35.01561 -32.12183 -31.73133 -30.16334 -28.49322 -27.52732 -26.02302 -25.55475 -23.11626 -22.53303 -21.18806 -20.58935 -20.02123 -16.84489 -16.18698 -15.90935 -15.72986 -15.42209 -15.07605 -14.72789 -14.45263 -14.25941 -13.99283 -13.10509 -12.95984 -12.74123 -12.67028 -12.48389 -12.30019 -11.87100 -11.67759 -11.53659 -11.28582 -11.24869 -11.07952 -10.79009 -10.74139 -10.43642 -10.24925 -10.09568 -9.54097 -9.18475 -9.05991 -8.62063 -8.41983 -8.08436 -6.88748 -6.06701 -3.26699 1.63681 1.83982 3.36269 3.48499 3.56567 4.23119 4.36406 4.45192 4.56424 4.69274 5.02456 5.06154 5.06708 5.27648 5.30962 5.43872 5.59442 5.65623 5.69017 5.72946 5.80750 5.83583 5.91405 5.92662 6.00234 6.04423 6.09494 6.13727 6.21914 6.24765 6.33006 6.46345 6.56999 6.64966 6.73991 6.77857 6.91222 7.30959 7.74519 8.01328 8.39624 8.77129 9.01602 9.73081 10.14152 11.09076 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.006826 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.432055 B = 4101.220607 C = 5101.345561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.044 3.956 4 C 0.153 3.847 5 N -0.580 5.580 6 C -0.256 4.256 7 H 0.083 0.917 8 C 0.046 3.954 9 N -0.878 5.878 10 Si 0.838 3.162 11 H -0.292 1.292 12 H -0.295 1.295 13 H -0.264 1.264 14 C 0.191 3.809 15 C 0.135 3.865 16 C -0.177 4.177 17 C -0.070 4.070 18 C -0.181 4.181 19 C 0.118 3.882 20 N -0.456 5.456 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.071 4.071 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.262 0.738 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -11.215 7.237 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.035 4.035 4 C 0.026 3.974 5 N -0.300 5.300 6 C -0.384 4.384 7 H 0.100 0.900 8 C -0.156 4.156 9 N -0.518 5.518 10 Si 0.665 3.335 11 H -0.219 1.219 12 H -0.222 1.222 13 H -0.189 1.189 14 C 0.064 3.936 15 C -0.006 4.006 16 C -0.197 4.197 17 C -0.096 4.096 18 C -0.184 4.184 19 C -0.021 4.021 20 N -0.166 5.166 21 C -0.108 4.108 22 C -0.157 4.157 23 C -0.109 4.109 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.651 -10.861 6.315 12.840 hybrid contribution 0.916 0.369 1.828 2.077 sum 3.567 -10.492 8.143 13.752 Atomic orbital electron populations 1.22621 0.82851 1.01570 0.99305 1.87870 1.18175 1.29093 1.95278 1.23417 0.97032 0.83787 0.99266 1.21222 0.89718 0.98148 0.88271 1.44209 1.73975 1.00097 1.11673 1.18741 1.34393 0.97191 0.88061 0.89965 1.25376 0.98112 0.95770 0.96310 1.70057 1.40663 0.99837 1.41193 0.87518 0.84910 0.76544 0.84500 1.21924 1.22215 1.18934 1.20104 0.87433 0.85259 1.00788 1.22764 0.97798 0.90696 0.89316 1.21913 0.97257 1.02374 0.98206 1.20899 0.92304 0.97994 0.98400 1.21277 0.96524 1.04340 0.96214 1.21853 0.92870 0.94270 0.93086 1.66839 0.99029 1.13120 1.37568 1.20931 0.89513 1.03293 0.97085 1.22296 0.97010 1.01154 0.95241 1.20844 0.90885 1.00244 0.98912 0.94445 0.90602 0.95143 0.95021 0.92193 0.93783 0.91424 0.92777 0.91053 0.91487 0.85326 0.86125 0.89786 0.89870 0.90985 0.90406 0.91222 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.39 -6.96 9.42 -35.23 -0.33 -7.29 16 3 C 0.04 0.84 6.27 37.16 0.23 1.07 16 4 C 0.15 3.34 4.45 -4.04 -0.02 3.32 16 5 N -0.58 -13.91 2.08 -174.62 -0.36 -14.27 16 6 C -0.26 -7.16 9.79 -15.06 -0.15 -7.31 16 7 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 8 C 0.05 1.32 5.02 -17.43 -0.09 1.24 16 9 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 10 Si 0.84 22.18 26.28 -169.99 -4.47 17.71 16 11 H -0.29 -8.09 7.11 56.52 0.40 -7.69 16 12 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 13 H -0.26 -6.75 5.84 56.52 0.33 -6.42 16 14 C 0.19 4.06 5.82 -5.20 -0.03 4.03 16 15 C 0.14 2.83 6.36 -82.66 -0.53 2.31 16 16 C -0.18 -3.20 9.73 -39.46 -0.38 -3.59 16 17 C -0.07 -1.15 10.17 -39.27 -0.40 -1.55 16 18 C -0.18 -3.01 6.16 -104.20 -0.64 -3.65 16 19 C 0.12 2.23 7.32 -82.04 -0.60 1.63 16 20 N -0.46 -10.08 10.26 -5.46 -0.06 -10.14 16 21 C -0.07 -1.05 6.77 -26.80 -0.18 -1.23 16 22 C -0.12 -1.42 7.08 -25.31 -0.18 -1.60 16 23 C -0.07 -0.88 6.77 -26.90 -0.18 -1.07 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 29 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 30 H 0.07 1.59 4.22 -51.93 -0.22 1.38 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.07 1.38 6.86 -51.93 -0.36 1.02 16 33 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 34 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -32.47 334.05 -7.98 -40.45 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.54 Total: -0.93 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.03 Total: -4.80 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.36 Total: -50.18 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.33 Total: -7.29 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.47 Total: 17.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.47 -7.98 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556786658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.567 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds