Wall clock time and date at job start Mon Mar 30 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36746 * 127.13962 * 2 1 4 4 C 1.50697 * 126.34205 * 359.97438 * 3 2 1 5 5 C 1.53004 * 117.49599 * 188.62060 * 4 3 2 6 6 C 1.52999 * 60.00101 * 252.51419 * 5 4 3 7 7 N 1.30296 * 107.30586 * 180.02562 * 3 2 1 8 8 N 1.28527 * 110.05555 * 0.02562 * 7 3 2 9 9 C 1.31220 * 109.85965 * 359.97438 * 8 7 3 10 10 N 1.38580 * 126.46894 * 179.97438 * 9 8 7 11 11 C 1.46902 * 110.99644 * 255.53508 * 10 9 8 12 12 C 1.50702 * 109.46501 * 60.76338 * 11 10 9 13 13 H 1.07994 * 120.00401 * 4.55561 * 12 11 10 14 14 C 1.37878 * 119.99790 * 184.56434 * 12 11 10 15 15 N 1.31515 * 119.99887 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00251 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47168 * 89.99278 * 16 14 12 18 18 H 1.48496 * 109.47043 * 209.99534 * 16 14 12 19 19 H 1.48504 * 109.46931 * 329.99747 * 16 14 12 20 20 C 1.46892 * 111.00528 * 19.49403 * 10 9 8 21 21 C 1.52998 * 109.47229 * 164.36467 * 20 10 9 22 22 C 1.53001 * 117.49945 * 244.47291 * 21 20 10 23 23 C 1.53001 * 117.49861 * 175.81113 * 21 20 10 24 24 H 1.08994 * 109.47296 * 275.12325 * 1 2 3 25 25 H 1.08999 * 109.46749 * 35.12333 * 1 2 3 26 26 H 1.09003 * 109.47050 * 155.12184 * 1 2 3 27 27 H 1.08997 * 115.55352 * 334.32519 * 4 3 2 28 28 H 1.09005 * 117.49487 * 0.02562 * 5 4 3 29 29 H 1.08996 * 117.49852 * 145.01659 * 5 4 3 30 30 H 1.08997 * 117.49269 * 252.51591 * 6 5 4 31 31 H 1.08992 * 117.51998 * 107.48520 * 6 5 4 32 32 H 1.09001 * 109.47212 * 180.75531 * 11 10 9 33 33 H 1.08991 * 109.47678 * 300.75881 * 11 10 9 34 34 H 0.97005 * 119.99693 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.47518 * 284.36968 * 20 10 9 36 36 H 1.09001 * 109.47161 * 44.37091 * 20 10 9 37 37 H 1.09001 * 115.55059 * 30.14517 * 21 20 10 38 38 H 1.08998 * 117.50128 * 359.97438 * 22 21 20 39 39 H 1.09004 * 117.49798 * 145.02100 * 22 21 20 40 40 H 1.09002 * 117.49965 * 214.98186 * 23 21 20 41 41 H 1.09001 * 117.50123 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2906 1.0901 0.0000 4 6 1.8621 2.5349 -0.0005 5 6 2.9478 3.5936 -0.2039 6 6 2.3115 3.4054 1.1747 7 7 3.5162 0.6480 -0.0006 8 7 3.5212 -0.6373 -0.0014 9 6 2.2888 -1.0878 -0.0010 10 7 1.8978 -2.4173 -0.0021 11 6 1.4196 -2.8242 -1.3302 12 6 2.5306 -2.6622 -2.3354 13 1 3.5158 -2.3646 -2.0081 14 6 2.2893 -2.8940 -3.6729 15 7 1.0897 -3.2568 -4.0715 16 14 3.6663 -2.6926 -4.9191 17 1 4.3816 -3.9841 -5.0794 18 1 3.0949 -2.2777 -6.2254 19 1 4.6171 -1.6560 -4.4430 20 6 2.9898 -3.2877 0.4537 21 6 2.4285 -4.6652 0.8118 22 6 2.5236 -5.1087 2.2730 23 6 3.4269 -5.7512 1.2173 24 1 -0.3633 0.0918 1.0235 25 1 -0.3633 0.8406 -0.5913 26 1 -0.3633 -0.9323 -0.4323 27 1 0.8789 2.7335 -0.4270 28 1 3.9719 3.2450 -0.3377 29 1 2.6790 4.4889 -0.7644 30 1 1.6240 4.1770 1.5212 31 1 2.9166 2.9330 1.9484 32 1 1.1065 -3.8678 -1.2997 33 1 0.5743 -2.1997 -1.6191 34 1 0.9200 -3.4202 -5.0125 35 1 3.7277 -3.3916 -0.3417 36 1 3.4621 -2.8483 1.3323 37 1 1.5488 -4.9755 0.2479 38 1 2.9864 -4.4193 2.9791 39 1 1.7066 -5.7111 2.6703 40 1 3.2039 -6.7761 0.9206 41 1 4.4837 -5.4843 1.2294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562002271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:36 Heat of formation + Delta-G solvation = 140.735246 kcal Electronic energy + Delta-G solvation = -21963.661859 eV Core-core repulsion = 18882.157669 eV Total energy + Delta-G solvation = -3081.504190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.26398 -37.94625 -36.95501 -35.57605 -34.23297 -32.54400 -29.05407 -27.44612 -27.10909 -25.38585 -23.77260 -22.65871 -22.30297 -22.00925 -20.40549 -19.87261 -19.13500 -16.89564 -16.53479 -15.98682 -15.72891 -15.28136 -14.73603 -14.48087 -14.28718 -13.76822 -13.46356 -13.05347 -12.88527 -12.52892 -12.00329 -11.91059 -11.48218 -11.33948 -11.18795 -11.08088 -10.89780 -10.84441 -10.73098 -10.54912 -10.49217 -10.22212 -10.05584 -9.88976 -9.59468 -9.48831 -9.39638 -8.56730 -8.52422 -7.40376 -6.14742 -4.21171 2.37950 2.87874 3.26838 3.33059 3.41885 3.48872 4.03897 4.19609 4.38395 4.54050 4.63651 4.84045 4.96380 5.12776 5.13896 5.18514 5.23922 5.35735 5.44090 5.49728 5.64192 5.71748 5.77357 5.88696 5.93163 5.96212 5.98852 6.14887 6.22977 6.24278 6.38827 6.43556 6.58426 6.69777 6.85030 6.99071 7.25172 7.28128 7.59923 7.82407 8.04835 8.15742 8.87795 9.46302 9.50360 10.92046 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.007320 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.951854 B = 3824.308807 C = 5270.328057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.475 5.475 3 C 0.180 3.820 4 C -0.073 4.073 5 C -0.152 4.152 6 C -0.163 4.163 7 N -0.287 5.287 8 N -0.331 5.331 9 C 0.411 3.589 10 N -0.468 5.468 11 C 0.191 3.809 12 C -0.550 4.550 13 H 0.070 0.930 14 C 0.069 3.931 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.108 3.892 21 C -0.130 4.130 22 C -0.185 4.185 23 C -0.180 4.180 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 6.375 10.140 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.170 5.170 3 C -0.087 4.087 4 C -0.094 4.094 5 C -0.190 4.190 6 C -0.201 4.201 7 N -0.126 5.126 8 N -0.175 5.175 9 C 0.054 3.946 10 N -0.191 5.191 11 C 0.067 3.933 12 C -0.589 4.589 13 H 0.088 0.912 14 C -0.134 4.134 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.020 4.020 21 C -0.149 4.149 22 C -0.222 4.222 23 C -0.217 4.217 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.739 6.219 10.296 12.154 hybrid contribution -0.416 -0.033 -1.501 1.558 sum -2.155 6.187 8.795 10.967 Atomic orbital electron populations 1.21946 0.76122 1.05085 1.02766 1.45760 1.08266 1.05803 1.57131 1.23300 0.87240 0.89528 1.08634 1.19904 0.99931 0.83938 1.05625 1.22975 0.98781 0.98454 0.98759 1.23031 1.03553 1.01454 0.92057 1.73751 1.17142 1.03936 1.17820 1.74618 1.16510 1.02348 1.23994 1.22432 0.85416 0.88246 0.98485 1.59297 1.34376 0.95314 1.30162 1.19989 0.95848 0.97347 0.80077 1.21773 0.97469 1.47294 0.92358 0.91174 1.24889 0.95595 0.94511 0.98403 1.69930 1.20479 1.46448 1.16313 0.86589 0.82388 0.78798 0.80446 1.20329 1.21181 1.19599 1.21428 0.91423 0.89199 0.99905 1.22234 1.01238 0.94769 0.96645 1.23003 1.02514 1.04047 0.92625 1.22911 0.96973 0.97821 1.04041 0.90926 0.90322 0.88475 0.86466 0.87287 0.88266 0.88326 0.88390 0.93389 0.94782 0.92726 0.91025 0.91736 0.87135 0.89320 0.89428 0.89093 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 11.00 59.84 0.66 1.88 16 2 N -0.48 -9.12 3.21 -121.46 -0.39 -9.51 16 3 C 0.18 3.38 7.59 -154.01 -1.17 2.21 16 4 C -0.07 -1.00 6.01 -91.77 -0.55 -1.55 16 5 C -0.15 -1.83 10.15 -26.73 -0.27 -2.10 16 6 C -0.16 -1.81 10.23 -26.73 -0.27 -2.08 16 7 N -0.29 -6.31 11.79 32.99 0.39 -5.93 16 8 N -0.33 -7.87 11.08 30.32 0.34 -7.53 16 9 C 0.41 9.10 5.86 -318.87 -1.87 7.23 16 10 N -0.47 -10.05 4.67 -175.89 -0.82 -10.87 16 11 C 0.19 4.68 4.84 -4.97 -0.02 4.65 16 12 C -0.55 -15.14 7.63 -34.44 -0.26 -15.40 16 13 H 0.07 2.03 6.27 -52.49 -0.33 1.71 16 14 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 15 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 16 Si 0.89 22.15 29.54 -169.99 -5.02 17.12 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.11 2.17 4.57 -3.83 -0.02 2.15 16 21 C -0.13 -2.24 5.70 -90.62 -0.52 -2.76 16 22 C -0.18 -2.62 10.18 -26.69 -0.27 -2.89 16 23 C -0.18 -2.63 10.25 -26.69 -0.27 -2.90 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.95 7.63 -51.93 -0.40 0.55 16 26 H 0.10 1.54 6.43 -51.93 -0.33 1.20 16 27 H 0.12 1.34 7.67 -51.93 -0.40 0.94 16 28 H 0.11 1.52 7.92 -51.93 -0.41 1.11 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.21 6.60 -51.93 -0.34 0.87 16 33 H 0.03 0.88 6.58 -51.93 -0.34 0.54 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.07 1.63 6.32 -51.93 -0.33 1.30 16 36 H 0.06 1.27 7.58 -51.93 -0.39 0.87 16 37 H 0.11 2.03 6.75 -51.93 -0.35 1.68 16 38 H 0.09 1.22 8.03 -51.93 -0.42 0.80 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -31.97 337.46 -10.76 -42.73 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.14 Total: 3.43 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -4.94 Total: -9.71 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.25 Total: -58.65 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.97 -10.76 -42.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562002271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.465 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds