Wall clock time and date at job start Mon Mar 30 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36746 * 127.13962 * 2 1 4 4 C 1.50697 * 126.34205 * 359.97438 * 3 2 1 5 5 C 1.53004 * 117.49599 * 188.62060 * 4 3 2 6 6 C 1.52999 * 60.00101 * 252.51419 * 5 4 3 7 7 N 1.30296 * 107.30586 * 180.02562 * 3 2 1 8 8 N 1.28527 * 110.05555 * 0.02562 * 7 3 2 9 9 C 1.31220 * 109.85965 * 359.97438 * 8 7 3 10 10 N 1.38580 * 126.46894 * 179.97438 * 9 8 7 11 11 C 1.46902 * 110.99644 * 255.53508 * 10 9 8 12 12 C 1.50702 * 109.46501 * 60.76338 * 11 10 9 13 13 H 1.07994 * 120.00401 * 4.55561 * 12 11 10 14 14 C 1.37878 * 119.99790 * 184.56434 * 12 11 10 15 15 N 1.31515 * 119.99887 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00251 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47168 * 89.99278 * 16 14 12 18 18 H 1.48496 * 109.47043 * 209.99534 * 16 14 12 19 19 H 1.48504 * 109.46931 * 329.99747 * 16 14 12 20 20 C 1.46892 * 111.00528 * 19.49403 * 10 9 8 21 21 C 1.52998 * 109.47229 * 164.36467 * 20 10 9 22 22 C 1.53001 * 117.49945 * 244.47291 * 21 20 10 23 23 C 1.53001 * 117.49861 * 175.81113 * 21 20 10 24 24 H 1.08994 * 109.47296 * 275.12325 * 1 2 3 25 25 H 1.08999 * 109.46749 * 35.12333 * 1 2 3 26 26 H 1.09003 * 109.47050 * 155.12184 * 1 2 3 27 27 H 1.08997 * 115.55352 * 334.32519 * 4 3 2 28 28 H 1.09005 * 117.49487 * 0.02562 * 5 4 3 29 29 H 1.08996 * 117.49852 * 145.01659 * 5 4 3 30 30 H 1.08997 * 117.49269 * 252.51591 * 6 5 4 31 31 H 1.08992 * 117.51998 * 107.48520 * 6 5 4 32 32 H 1.09001 * 109.47212 * 180.75531 * 11 10 9 33 33 H 1.08991 * 109.47678 * 300.75881 * 11 10 9 34 34 H 0.97005 * 119.99693 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.47518 * 284.36968 * 20 10 9 36 36 H 1.09001 * 109.47161 * 44.37091 * 20 10 9 37 37 H 1.09001 * 115.55059 * 30.14517 * 21 20 10 38 38 H 1.08998 * 117.50128 * 359.97438 * 22 21 20 39 39 H 1.09004 * 117.49798 * 145.02100 * 22 21 20 40 40 H 1.09002 * 117.49965 * 214.98186 * 23 21 20 41 41 H 1.09001 * 117.50123 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2906 1.0901 0.0000 4 6 1.8621 2.5349 -0.0005 5 6 2.9478 3.5936 -0.2039 6 6 2.3115 3.4054 1.1747 7 7 3.5162 0.6480 -0.0006 8 7 3.5212 -0.6373 -0.0014 9 6 2.2888 -1.0878 -0.0010 10 7 1.8978 -2.4173 -0.0021 11 6 1.4196 -2.8242 -1.3302 12 6 2.5306 -2.6622 -2.3354 13 1 3.5158 -2.3646 -2.0081 14 6 2.2893 -2.8940 -3.6729 15 7 1.0897 -3.2568 -4.0715 16 14 3.6663 -2.6926 -4.9191 17 1 4.3816 -3.9841 -5.0794 18 1 3.0949 -2.2777 -6.2254 19 1 4.6171 -1.6560 -4.4430 20 6 2.9898 -3.2877 0.4537 21 6 2.4285 -4.6652 0.8118 22 6 2.5236 -5.1087 2.2730 23 6 3.4269 -5.7512 1.2173 24 1 -0.3633 0.0918 1.0235 25 1 -0.3633 0.8406 -0.5913 26 1 -0.3633 -0.9323 -0.4323 27 1 0.8789 2.7335 -0.4270 28 1 3.9719 3.2450 -0.3377 29 1 2.6790 4.4889 -0.7644 30 1 1.6240 4.1770 1.5212 31 1 2.9166 2.9330 1.9484 32 1 1.1065 -3.8678 -1.2997 33 1 0.5743 -2.1997 -1.6191 34 1 0.9200 -3.4202 -5.0125 35 1 3.7277 -3.3916 -0.3417 36 1 3.4621 -2.8483 1.3323 37 1 1.5488 -4.9755 0.2479 38 1 2.9864 -4.4193 2.9791 39 1 1.7066 -5.7111 2.6703 40 1 3.2039 -6.7761 0.9206 41 1 4.4837 -5.4843 1.2294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562002271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:35 Heat of formation + Delta-G solvation = 123.423213 kcal Electronic energy + Delta-G solvation = -21964.412565 eV Core-core repulsion = 18882.157669 eV Total energy + Delta-G solvation = -3082.254896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.83365 -39.47064 -38.00853 -37.06520 -35.70461 -34.64214 -30.67805 -29.29617 -28.44991 -27.13737 -25.14065 -24.46432 -23.22909 -23.16834 -21.87186 -21.34249 -20.60181 -18.77577 -18.05740 -17.50239 -17.29009 -16.80219 -16.38504 -15.92882 -15.55839 -15.35063 -14.79597 -14.68408 -14.17553 -14.07002 -13.64833 -13.25211 -13.15709 -12.99387 -12.67023 -12.51441 -12.39158 -12.30992 -12.27174 -12.09789 -12.04635 -11.85970 -11.49063 -11.22489 -11.19017 -10.90432 -10.86390 -10.67503 -10.20276 -9.13741 -8.29153 -6.41960 0.87154 1.26910 1.28448 1.40298 1.45401 1.89405 2.30259 2.85543 2.98707 3.00172 3.14369 3.39715 3.72038 3.90328 3.95871 4.00675 4.07986 4.14090 4.18528 4.31200 4.38322 4.39930 4.56988 4.60922 4.81069 4.81405 4.85880 4.94862 4.98583 5.04684 5.10688 5.13160 5.18397 5.21563 5.31406 5.32628 5.39516 5.61716 5.70508 5.86881 6.00931 6.45989 6.71877 7.27599 7.88571 8.75666 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.007320 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.951854 B = 3824.308807 C = 5270.328057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.478 5.478 3 C 0.197 3.803 4 C -0.096 4.096 5 C -0.151 4.151 6 C -0.137 4.137 7 N -0.330 5.330 8 N -0.366 5.366 9 C 0.385 3.615 10 N -0.455 5.455 11 C 0.210 3.790 12 C -0.556 4.556 13 H 0.048 0.952 14 C 0.027 3.973 15 N -0.914 5.914 16 Si 0.943 3.057 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.288 1.288 20 C 0.118 3.882 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.171 4.171 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.148 0.852 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 7.606 10.970 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.172 5.172 3 C -0.071 4.071 4 C -0.117 4.117 5 C -0.189 4.189 6 C -0.175 4.175 7 N -0.169 5.169 8 N -0.210 5.210 9 C 0.027 3.973 10 N -0.179 5.179 11 C 0.085 3.915 12 C -0.595 4.595 13 H 0.066 0.934 14 C -0.173 4.173 15 N -0.554 5.554 16 Si 0.769 3.231 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.213 1.213 20 C -0.009 4.009 21 C -0.178 4.178 22 C -0.196 4.196 23 C -0.208 4.208 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.098 0.902 27 H 0.166 0.834 28 H 0.100 0.900 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.890 7.449 11.135 13.705 hybrid contribution -0.051 -0.315 -1.709 1.738 sum -2.941 7.134 9.426 12.182 Atomic orbital electron populations 1.22270 0.73475 1.05443 1.05240 1.46093 1.09890 1.04981 1.56207 1.24345 0.86358 0.91543 1.04903 1.20322 1.01756 0.80982 1.08627 1.23060 0.96975 0.98679 1.00180 1.23110 1.02968 1.00606 0.90795 1.73668 1.19317 1.03321 1.20581 1.74481 1.18063 1.03600 1.24876 1.22569 0.85896 0.88889 0.99948 1.59318 1.34787 0.95566 1.28201 1.19607 0.94467 0.96341 0.81055 1.21880 0.97319 1.46973 0.93366 0.93356 1.25507 0.97477 0.94489 0.99852 1.69988 1.21501 1.47042 1.16855 0.85786 0.79868 0.78586 0.78878 1.19166 1.19867 1.21330 1.21312 0.90532 0.90694 0.98401 1.22070 1.02090 0.94005 0.99655 1.23073 1.02523 1.03206 0.90757 1.23024 0.96707 0.97691 1.03394 0.87834 0.87356 0.90228 0.83448 0.90010 0.85042 0.84363 0.90058 0.94372 0.96117 0.92338 0.94664 0.91773 0.88535 0.88744 0.87222 0.87449 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 11.00 127.77 1.40 3.53 16 2 N -0.48 -18.27 3.21 -538.19 -1.73 -19.99 16 3 C 0.20 7.31 7.59 137.64 1.04 8.36 16 4 C -0.10 -2.38 6.01 -11.54 -0.07 -2.45 16 5 C -0.15 -3.29 10.15 30.60 0.31 -2.98 16 6 C -0.14 -2.60 10.23 30.60 0.31 -2.29 16 7 N -0.33 -14.96 11.79 -49.53 -0.58 -15.54 16 8 N -0.37 -18.22 11.08 -58.00 -0.64 -18.86 16 9 C 0.38 17.60 5.86 260.11 1.52 19.12 16 10 N -0.46 -20.32 4.67 -710.39 -3.32 -23.64 16 11 C 0.21 10.69 4.84 85.56 0.41 11.10 16 12 C -0.56 -31.74 7.63 25.60 0.20 -31.55 16 13 H 0.05 2.95 6.27 -2.91 -0.02 2.93 16 14 C 0.03 1.56 5.46 84.65 0.46 2.02 16 15 N -0.91 -52.82 13.29 21.45 0.28 -52.53 16 16 Si 0.94 46.20 29.54 68.60 2.03 48.22 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 20 C 0.12 4.96 4.57 86.30 0.39 5.36 16 21 C -0.16 -5.56 5.70 -10.79 -0.06 -5.62 16 22 C -0.16 -4.24 10.18 30.62 0.31 -3.93 16 23 C -0.17 -4.83 10.25 30.62 0.31 -4.52 16 24 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.11 2.31 7.63 -2.39 -0.02 2.29 16 26 H 0.08 2.50 6.43 -2.39 -0.02 2.49 16 27 H 0.15 2.75 7.67 -2.39 -0.02 2.73 16 28 H 0.08 2.26 7.92 -2.38 -0.02 2.24 16 29 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 2.01 6.60 -2.39 -0.02 1.99 16 33 H 0.02 1.11 6.58 -2.39 -0.02 1.09 16 34 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 35 H 0.04 1.71 6.32 -2.39 -0.02 1.70 16 36 H 0.06 2.64 7.58 -2.39 -0.02 2.62 16 37 H 0.10 3.64 6.75 -2.39 -0.02 3.62 16 38 H 0.09 2.43 8.03 -2.39 -0.02 2.41 16 39 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -72.52 337.46 3.62 -68.90 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 1.03 Total: 17.29 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 6.56 Total: -3.84 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -5.99 Total: -130.57 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -72.52 3.62 -68.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562002271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.321 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds