Wall clock time and date at job start Mon Mar 30 2020 02:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46861 * 2 1 4 4 C 1.34949 * 126.03731 * 124.99982 * 3 2 1 5 5 C 1.35323 * 107.74336 * 180.02562 * 4 3 2 6 6 C 1.50701 * 126.03566 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47208 * 19.99871 * 6 5 4 8 8 C 1.53002 * 109.47034 * 259.99722 * 6 5 4 9 9 N 1.46900 * 109.47082 * 140.00096 * 6 5 4 10 10 C 1.46904 * 110.99779 * 204.99810 * 9 6 5 11 11 C 1.52996 * 109.46858 * 179.97438 * 10 9 6 12 12 H 1.09000 * 109.47753 * 305.00128 * 11 10 9 13 13 C 1.47204 * 109.47042 * 64.99895 * 11 10 9 14 14 N 9.28570 * 113.15866 * 354.95348 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99851 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.39864 * 107.92090 * 0.26397 * 5 4 3 25 25 N 1.30835 * 108.20620 * 359.55412 * 24 5 4 26 26 H 1.08999 * 109.47144 * 299.99476 * 1 2 3 27 27 H 1.08997 * 109.47759 * 59.99920 * 1 2 3 28 28 H 1.09004 * 109.46932 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 240.00524 * 2 1 3 30 30 H 1.08994 * 109.47589 * 119.99579 * 2 1 3 31 31 H 1.07999 * 126.12619 * 0.04418 * 4 3 2 32 32 H 1.09007 * 109.47110 * 60.00177 * 8 6 5 33 33 H 1.08995 * 109.47103 * 180.02562 * 8 6 5 34 34 H 1.08999 * 109.47421 * 300.00647 * 8 6 5 35 35 H 1.00897 * 111.00127 * 81.04164 * 9 6 5 36 36 H 1.08997 * 109.46933 * 59.99775 * 10 9 6 37 37 H 1.08996 * 109.47325 * 299.99917 * 10 9 6 38 38 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 39 39 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.07999 * 125.89606 * 179.73952 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0711 3.2139 0.5463 6 6 3.9546 4.2001 1.2659 7 1 4.6760 3.6610 1.8799 8 6 3.0953 5.0979 2.1584 9 7 4.6685 5.0261 0.2830 10 6 5.9179 5.5539 0.8473 11 6 6.6318 6.4064 -0.2035 12 1 6.7784 5.8188 -1.1098 13 6 5.8137 7.5903 -0.5134 14 7 5.1818 8.5044 -0.7510 15 6 7.9905 6.8534 0.3397 16 6 8.7451 7.5887 -0.7379 17 1 8.3000 7.7240 -1.7125 18 6 10.0013 8.0941 -0.4775 19 7 10.5431 7.9296 0.7095 20 14 10.9334 9.0121 -1.8107 21 1 10.6076 10.4590 -1.7358 22 1 12.3931 8.8227 -1.6141 23 1 10.5407 8.4846 -3.1422 24 6 2.3067 3.4745 -0.5957 25 7 1.6799 2.3751 -0.9276 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 3.3192 1.4126 1.7357 32 1 2.5656 4.4851 2.8878 33 1 3.7343 5.8115 2.6786 34 1 2.3738 5.6370 1.5445 35 1 4.0811 5.7729 -0.0565 36 1 6.5622 4.7255 1.1415 37 1 5.6921 6.1663 1.7202 38 1 8.5623 5.9796 0.6520 39 1 7.8409 7.5139 1.1937 40 1 11.4270 8.2849 0.8926 41 1 2.2468 4.4192 -1.1156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563001733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:01 Heat of formation + Delta-G solvation = 67.440016 kcal Electronic energy + Delta-G solvation = -20399.695747 eV Core-core repulsion = 17315.013237 eV Total energy + Delta-G solvation = -3084.682510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.05012 -39.01762 -37.18610 -35.63338 -35.05454 -33.79206 -31.48207 -30.81689 -29.08717 -27.86591 -24.99050 -24.33170 -23.51501 -23.28743 -21.50761 -20.49195 -18.53916 -18.20842 -17.81313 -16.68575 -16.44574 -16.24241 -15.63351 -15.23741 -15.13183 -14.74917 -14.59292 -14.47050 -14.25008 -13.88720 -13.71349 -13.43999 -13.32477 -13.20569 -13.03739 -12.92101 -12.73178 -12.64302 -12.44814 -12.31722 -12.22728 -12.06767 -11.93380 -11.36861 -11.26015 -11.08777 -10.53536 -10.23836 -9.33571 -9.09105 -8.17885 -6.25437 1.09252 1.40622 1.42775 1.52082 1.76807 1.96377 1.99105 2.01565 2.42825 3.17442 3.30150 3.30831 3.72097 4.09658 4.15317 4.17077 4.22843 4.34756 4.43867 4.45987 4.46699 4.55952 4.72970 4.74788 4.85709 4.87044 4.96516 5.02462 5.05814 5.17713 5.25809 5.27180 5.37796 5.50613 5.67271 5.82212 5.82507 6.14443 6.25306 6.33172 6.45412 6.79532 6.88328 6.90237 7.42754 8.92953 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031682 B = 0.002973 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.572868 B = 9416.333154 C = 9502.291497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 N -0.377 5.377 4 C 0.061 3.939 5 C -0.229 4.229 6 C 0.166 3.834 7 H 0.098 0.902 8 C -0.171 4.171 9 N -0.686 5.686 10 C 0.080 3.920 11 C 0.018 3.982 12 H 0.119 0.881 13 C 0.252 3.748 14 N -0.507 5.507 15 C 0.039 3.961 16 C -0.539 4.539 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.923 5.923 20 Si 0.946 3.054 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.266 1.266 24 C 0.051 3.949 25 N -0.337 5.337 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.207 0.793 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.333 0.667 36 H 0.106 0.894 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 -18.828 4.600 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.003 3.997 3 N -0.160 5.160 4 C -0.086 4.086 5 C -0.241 4.241 6 C 0.056 3.944 7 H 0.116 0.884 8 C -0.230 4.230 9 N -0.316 5.316 10 C -0.050 4.050 11 C -0.004 4.004 12 H 0.137 0.863 13 C -0.064 4.064 14 N -0.184 5.184 15 C 0.000 4.000 16 C -0.577 4.577 17 H 0.070 0.930 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.772 3.228 21 H -0.210 1.210 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.134 4.134 25 N -0.159 5.159 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.146 0.854 31 H 0.223 0.777 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.151 0.849 36 H 0.125 0.875 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.002 -18.684 3.194 26.141 hybrid contribution 1.165 1.805 0.422 2.189 sum -16.838 -16.879 3.616 24.114 Atomic orbital electron populations 1.22003 0.93910 1.03799 1.01980 1.21993 0.96031 0.76263 1.05425 1.48928 1.35784 1.10706 1.20632 1.22788 0.94974 0.94054 0.96792 1.20015 1.07214 0.95543 1.01300 1.19691 0.92915 0.91758 0.90076 0.88405 1.22427 1.00224 1.00060 1.00334 1.60579 1.06724 1.26285 1.37964 1.21945 0.91363 0.97811 0.93855 1.19243 0.92382 0.86972 1.01754 0.86313 1.29699 0.91362 0.94199 0.91123 1.81045 1.13912 1.12202 1.11259 1.18981 0.89273 0.96594 0.95130 1.21576 1.01553 1.35666 0.98877 0.92962 1.25695 0.98683 0.97023 0.97356 1.70027 1.16937 1.46948 1.22349 0.85723 0.78123 0.78714 0.80200 1.21029 1.20312 1.19009 1.23742 0.95672 0.97225 0.96775 1.77238 1.25576 0.97830 1.15270 0.92823 0.93537 0.88371 0.89662 0.85426 0.77654 0.90901 0.92914 0.93534 0.84895 0.87537 0.94588 0.94428 0.98009 0.92730 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.10 71.98 0.73 -0.98 16 2 C 0.12 1.32 7.23 86.38 0.62 1.95 16 3 N -0.38 -7.16 3.68 -348.06 -1.28 -8.44 16 4 C 0.06 1.02 11.36 83.54 0.95 1.97 16 5 C -0.23 -4.82 5.09 -20.14 -0.10 -4.92 16 6 C 0.17 3.33 3.02 44.17 0.13 3.47 16 7 H 0.10 1.71 7.79 -2.39 -0.02 1.69 16 8 C -0.17 -3.29 9.14 71.98 0.66 -2.63 16 9 N -0.69 -16.96 5.99 -495.45 -2.97 -19.93 16 10 C 0.08 2.20 4.92 86.30 0.42 2.62 16 11 C 0.02 0.66 2.42 -12.60 -0.03 0.62 16 12 H 0.12 4.09 8.14 -2.39 -0.02 4.08 16 13 C 0.25 10.08 12.98 89.44 1.16 11.24 16 14 N -0.51 -21.98 18.54 20.01 0.37 -21.61 16 15 C 0.04 1.79 4.42 29.85 0.13 1.92 16 16 C -0.54 -28.67 8.60 25.60 0.22 -28.45 16 17 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 18 C 0.01 0.62 5.46 84.66 0.46 1.09 16 19 N -0.92 -52.97 13.29 21.45 0.28 -52.68 16 20 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 C 0.05 1.27 11.67 85.23 0.99 2.27 16 25 N -0.34 -8.68 12.42 -57.03 -0.71 -9.39 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.13 0.50 8.07 -2.39 -0.02 0.48 16 31 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.05 1.06 7.45 -2.39 -0.02 1.05 16 34 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 35 H 0.33 8.84 7.55 -89.70 -0.68 8.16 16 36 H 0.11 2.62 8.05 -2.39 -0.02 2.61 16 37 H 0.04 0.99 7.43 -2.39 -0.02 0.97 16 38 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 41 H 0.17 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -68.07 352.80 4.42 -63.66 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.34 Total: 12.47 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 6.35 Total: -9.84 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -4.30 Total: -112.05 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.07 4.42 -63.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563001733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.095 kcal (2) G-P(sol) polarization free energy of solvation -68.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds