Wall clock time and date at job start Mon Mar 30 2020 02:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 N 1.46895 * 109.47379 * 94.99744 * 8 7 6 10 10 C 1.46902 * 110.99790 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47041 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.47472 * 305.00499 * 11 10 9 13 13 C 1.47203 * 109.46970 * 65.00400 * 11 10 9 14 14 N 7.61311 * 136.32277 * 184.00912 * 2 1 3 15 15 C 1.52995 * 109.47139 * 185.00068 * 11 10 9 16 16 C 1.50699 * 109.47196 * 175.00305 * 15 11 10 17 17 H 1.07999 * 120.00025 * 0.02562 * 16 15 11 18 18 C 1.37881 * 120.00216 * 180.02562 * 16 15 11 19 19 N 1.31514 * 119.99969 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99995 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47108 * 59.99944 * 20 18 16 22 22 H 1.48499 * 109.47219 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47311 * 299.99877 * 20 18 16 24 24 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 33 33 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 34 34 H 1.09003 * 109.46701 * 215.00322 * 8 7 6 35 35 H 1.09004 * 109.46787 * 334.99601 * 8 7 6 36 36 H 1.00902 * 110.99809 * 303.95369 * 9 8 7 37 37 H 1.08997 * 109.47386 * 300.00495 * 10 9 8 38 38 H 1.09005 * 109.46702 * 60.00308 * 10 9 8 39 39 H 1.09002 * 109.47178 * 295.00115 * 15 11 10 40 40 H 1.09000 * 109.47046 * 55.00411 * 15 11 10 41 41 H 0.96993 * 120.00296 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 7 4.6810 -3.7646 -2.7540 10 6 5.1824 -5.0520 -3.2532 11 6 6.6774 -5.1694 -2.9497 12 1 7.2012 -4.3083 -3.3651 13 6 6.8805 -5.2111 -1.4924 14 7 7.0361 -5.2447 -0.3676 15 6 7.2262 -6.4519 -3.5780 16 6 8.7197 -6.5067 -3.3849 17 1 9.2268 -5.7069 -2.8657 18 6 9.4390 -7.5778 -3.8712 19 7 8.8215 -8.5520 -4.5031 20 14 11.2902 -7.6460 -3.6313 21 1 11.6020 -7.6340 -2.1794 22 1 11.8229 -8.8907 -4.2412 23 1 11.9174 -6.4677 -4.2820 24 7 2.3857 -2.0399 -1.2766 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.9883 0.8861 -2.6859 33 1 2.8977 -0.9843 -4.2880 34 1 2.6967 -4.4198 -2.5377 35 1 3.0748 -3.6642 -4.1044 36 1 5.2052 -2.9960 -3.1446 37 1 4.6469 -5.8651 -2.7633 38 1 5.0250 -5.1102 -4.3302 39 1 6.7661 -7.3165 -3.0996 40 1 6.9970 -6.4614 -4.6436 41 1 9.3273 -9.3057 -4.8449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564855390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:30 Heat of formation + Delta-G solvation = 87.426078 kcal Electronic energy + Delta-G solvation = -20127.426730 eV Core-core repulsion = 17043.610881 eV Total energy + Delta-G solvation = -3083.815849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32246 -37.37081 -36.20353 -34.96140 -33.48198 -31.83660 -30.29167 -29.89480 -27.77282 -27.12699 -25.05460 -22.85478 -22.41485 -21.70140 -20.24558 -19.79561 -17.35464 -16.95800 -16.37198 -15.52816 -15.18517 -14.82199 -14.67063 -14.32038 -14.17653 -13.74789 -13.68881 -13.19843 -13.05206 -12.73139 -12.70810 -12.44315 -12.27892 -11.90238 -11.82952 -11.73452 -11.57714 -11.48457 -11.15896 -11.00178 -10.63590 -10.56390 -10.51130 -10.18269 -9.56049 -9.32929 -9.17928 -8.65695 -8.42203 -8.21954 -6.06223 -4.09132 1.83177 2.33134 2.71193 3.33714 3.37811 3.41900 3.82713 3.92462 4.12305 4.39878 4.44968 4.49577 4.61141 4.64576 4.74141 4.98924 5.00168 5.07340 5.20393 5.27720 5.31850 5.35899 5.47821 5.55995 5.64757 5.65012 5.68460 5.78487 5.83791 6.04805 6.07762 6.44293 6.54092 6.59718 6.94866 7.13432 7.46277 7.53531 7.58310 7.75358 7.89197 8.27160 8.67250 8.95512 9.56015 11.04695 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035636 B = 0.002771 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.544097 B =10101.746592 C =10376.623721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 C -0.164 4.164 4 N -0.369 5.369 5 C 0.050 3.950 6 C -0.268 4.268 7 C 0.078 3.922 8 C 0.140 3.860 9 N -0.687 5.687 10 C 0.067 3.933 11 C 0.010 3.990 12 H 0.099 0.901 13 C 0.255 3.745 14 N -0.479 5.479 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.275 1.275 24 N -0.274 5.274 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.168 0.832 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.343 0.657 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.026 0.974 40 H 0.038 0.962 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.782 19.545 1.305 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 C -0.222 4.222 4 N -0.152 5.152 5 C -0.096 4.096 6 C -0.298 4.298 7 C -0.089 4.089 8 C 0.010 3.990 9 N -0.319 5.319 10 C -0.062 4.062 11 C -0.012 4.012 12 H 0.117 0.883 13 C -0.062 4.062 14 N -0.156 5.156 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 N -0.095 5.095 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.185 0.815 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.161 0.839 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.856 18.687 4.855 26.298 hybrid contribution 1.144 0.523 -2.103 2.451 sum -16.712 19.210 2.752 25.610 Atomic orbital electron populations 1.22233 0.93747 1.03332 1.02876 1.21235 0.94657 0.92713 0.86212 1.22188 1.02523 0.94015 1.03465 1.48880 1.50612 1.07513 1.08214 1.22366 1.01688 0.99753 0.85775 1.21407 1.14220 0.92701 1.01483 1.22204 0.99118 0.96411 0.91154 1.20185 0.89657 0.91378 0.97824 1.60429 1.02103 1.04925 1.64441 1.22087 0.94533 0.91190 0.98436 1.19210 0.94721 1.04249 0.83007 0.88330 1.28848 0.91306 0.91333 0.94712 1.80975 1.10412 1.10664 1.13559 1.19163 0.96015 0.89157 0.96337 1.21118 0.92148 1.06280 1.36880 0.92561 1.24951 0.98568 0.95497 0.94959 1.69926 1.35925 1.09606 1.37633 0.86653 0.85477 0.77378 0.78565 1.20242 1.21215 1.20075 1.77420 1.19908 0.92539 1.19668 0.92001 0.91573 0.90567 0.87970 0.91621 0.90037 0.91352 0.81510 0.83715 0.89692 0.92980 0.83877 0.90334 0.93028 0.95517 0.94392 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.52 37.16 0.35 -0.68 16 2 C 0.15 1.22 3.93 -67.93 -0.27 0.95 16 3 C -0.16 -0.88 8.84 37.16 0.33 -0.55 16 4 N -0.37 -4.13 3.52 -54.87 -0.19 -4.32 16 5 C 0.05 0.48 10.59 -17.22 -0.18 0.30 16 6 C -0.27 -2.92 10.74 -40.01 -0.43 -3.35 16 7 C 0.08 1.03 6.73 -82.41 -0.55 0.48 16 8 C 0.14 1.75 6.24 -4.98 -0.03 1.72 16 9 N -0.69 -9.74 6.19 -115.05 -0.71 -10.45 16 10 C 0.07 1.02 5.05 -3.82 -0.02 1.00 16 11 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 12 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 13 C 0.25 5.58 13.67 -20.76 -0.28 5.29 16 14 N -0.48 -11.47 18.54 42.15 0.78 -10.69 16 15 C 0.03 0.75 4.42 -27.89 -0.12 0.62 16 16 C -0.53 -14.18 8.60 -34.44 -0.30 -14.48 16 17 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 20 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 N -0.27 -4.01 12.58 33.67 0.42 -3.59 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.29 7.16 -51.93 -0.37 -0.09 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.17 1.01 7.27 -52.49 -0.38 0.63 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.34 4.48 8.72 -39.29 -0.34 4.14 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -33.45 354.07 -7.02 -40.47 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.55 Total: -1.17 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.82 Total: -7.09 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 1.04 Total: -54.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.45 -7.02 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564855390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.899 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds