Wall clock time and date at job start Mon Mar 30 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.34957 * 126.03754 * 84.71590 * 4 2 1 6 6 C 1.35313 * 107.74843 * 179.84000 * 5 4 2 7 7 C 1.39869 * 107.92161 * 0.42453 * 6 5 4 8 8 C 1.50699 * 125.89932 * 179.75766 * 7 6 5 9 9 N 1.46895 * 109.46919 * 95.00217 * 8 7 6 10 10 C 1.46905 * 110.99543 * 179.97438 * 9 8 7 11 11 C 1.53011 * 109.46755 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46989 * 55.00379 * 11 10 9 13 13 C 1.47202 * 109.47011 * 294.99969 * 11 10 9 14 14 N 8.44192 * 139.86689 * 231.98719 * 2 1 3 15 15 C 1.52997 * 109.46789 * 175.00036 * 11 10 9 16 16 C 1.50703 * 109.46857 * 185.00056 * 15 11 10 17 17 H 1.07990 * 120.00032 * 359.97438 * 16 15 11 18 18 C 1.37885 * 119.99956 * 180.02562 * 16 15 11 19 19 N 1.31513 * 119.99786 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99930 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47562 * 59.99633 * 20 18 16 22 22 H 1.48495 * 109.47069 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46947 * 299.99334 * 20 18 16 24 24 N 1.30841 * 108.19877 * 359.73764 * 7 6 5 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08005 * 126.12216 * 0.02562 * 5 4 2 33 33 H 1.08001 * 126.03954 * 180.15750 * 6 5 4 34 34 H 1.09010 * 109.46669 * 214.99925 * 8 7 6 35 35 H 1.08995 * 109.47117 * 334.99408 * 8 7 6 36 36 H 1.00893 * 111.00047 * 303.94949 * 9 8 7 37 37 H 1.09003 * 109.47415 * 299.99384 * 10 9 8 38 38 H 1.08996 * 109.47386 * 60.00007 * 10 9 8 39 39 H 1.09007 * 109.47357 * 304.99726 * 15 11 10 40 40 H 1.09000 * 109.47148 * 64.99770 * 15 11 10 41 41 H 0.97000 * 120.00138 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1882 -0.1406 -2.4168 6 6 2.6567 -1.1051 -3.2422 7 6 2.7681 -2.2873 -2.5031 8 6 3.2464 -3.6163 -3.0287 9 7 4.6816 -3.7640 -2.7528 10 6 5.1837 -5.0512 -3.2518 11 6 6.6787 -5.1681 -2.9474 12 1 6.8447 -5.0211 -1.8802 13 6 7.4152 -4.1428 -3.7044 14 7 7.9842 -3.3510 -4.2871 15 6 7.1748 -6.5571 -3.3540 16 6 8.6159 -6.7161 -2.9426 17 1 9.1267 -5.9072 -2.4416 18 6 9.2823 -7.8939 -3.2067 19 7 8.6603 -8.8787 -3.8173 20 14 11.0682 -8.0912 -2.6960 21 1 11.1820 -7.9371 -1.2235 22 1 11.5502 -9.4388 -3.0919 23 1 11.8925 -7.0544 -3.3675 24 7 2.3856 -2.0400 -1.2765 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.9890 0.8862 -2.6857 33 1 2.8977 -0.9845 -4.2880 34 1 2.6974 -4.4200 -2.5378 35 1 3.0762 -3.6641 -4.1042 36 1 5.2058 -2.9953 -3.1430 37 1 4.6482 -5.8647 -2.7622 38 1 5.0271 -5.1095 -4.3289 39 1 6.5700 -7.3179 -2.8605 40 1 7.0909 -6.6708 -4.4348 41 1 9.1289 -9.7074 -4.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564855394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:32 Heat of formation + Delta-G solvation = 66.708853 kcal Electronic energy + Delta-G solvation = -20123.738737 eV Core-core repulsion = 17039.024521 eV Total energy + Delta-G solvation = -3084.714215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.15085 -38.91830 -37.13683 -36.23574 -35.38073 -33.49593 -31.32584 -30.77418 -28.67577 -28.19173 -26.43060 -24.00186 -23.57318 -23.39415 -21.00614 -20.65172 -18.54235 -18.24079 -17.98397 -16.88154 -16.63718 -16.26741 -15.62770 -15.30831 -15.02452 -14.98448 -14.57447 -14.44939 -14.27453 -14.05515 -13.81748 -13.67097 -13.36201 -13.16626 -13.08310 -13.01210 -12.74231 -12.62731 -12.45018 -12.35928 -12.29949 -12.05523 -11.95810 -11.48988 -11.37639 -11.17055 -10.53814 -10.22072 -9.51875 -9.35328 -8.18458 -6.26560 0.99634 1.41598 1.42723 1.50157 1.61546 1.80224 1.94741 1.97711 2.42364 3.16377 3.25968 3.33367 3.51596 3.86660 3.95716 3.97468 4.12182 4.16827 4.30915 4.44914 4.59497 4.61142 4.65556 4.76824 4.79802 4.83699 4.85051 4.94755 4.96962 5.00885 5.15459 5.20100 5.24368 5.48544 5.64076 5.71101 5.80486 5.98669 6.22136 6.23498 6.30315 6.75566 6.85780 6.87984 7.41575 8.92282 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.032830 B = 0.002747 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.662711 B =10190.243338 C =10255.415003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 C -0.157 4.157 4 N -0.369 5.369 5 C 0.060 3.940 6 C -0.290 4.290 7 C 0.062 3.938 8 C 0.141 3.859 9 N -0.689 5.689 10 C 0.080 3.920 11 C 0.019 3.981 12 H 0.118 0.882 13 C 0.252 3.748 14 N -0.504 5.504 15 C 0.039 3.961 16 C -0.541 4.541 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.923 5.923 20 Si 0.948 3.052 21 H -0.264 1.264 22 H -0.281 1.281 23 H -0.281 1.281 24 N -0.317 5.317 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.205 0.795 33 H 0.155 0.845 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.336 0.664 37 H 0.107 0.893 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.004 0.996 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 19.057 6.265 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 C -0.215 4.215 4 N -0.153 5.153 5 C -0.086 4.086 6 C -0.320 4.320 7 C -0.104 4.104 8 C 0.011 3.989 9 N -0.321 5.321 10 C -0.050 4.050 11 C -0.003 4.003 12 H 0.136 0.864 13 C -0.064 4.064 14 N -0.181 5.181 15 C 0.001 3.999 16 C -0.579 4.579 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.774 3.226 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.207 1.207 24 N -0.140 5.140 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.222 0.778 33 H 0.173 0.827 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.153 0.847 37 H 0.125 0.875 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.115 19.439 7.277 28.217 hybrid contribution 1.198 -0.307 -1.487 1.934 sum -17.916 19.132 5.790 26.843 Atomic orbital electron populations 1.22189 0.92395 1.02453 1.04399 1.21569 0.95724 0.93659 0.84740 1.22178 1.01591 0.92462 1.05294 1.49199 1.49921 1.06671 1.09464 1.22927 0.99781 1.00966 0.84949 1.21687 1.15133 0.92716 1.02418 1.22330 0.99545 0.97064 0.91442 1.20222 0.88215 0.91706 0.98773 1.60463 1.03199 1.04251 1.64150 1.21951 0.91791 0.92527 0.98740 1.19221 0.92125 0.90064 0.98889 0.86400 1.29638 0.92199 0.92314 0.92282 1.81017 1.10900 1.14207 1.12017 1.18981 0.95156 0.89617 0.96191 1.21533 0.98162 0.99850 1.38377 0.92942 1.25710 1.02010 0.95854 0.95182 1.70021 1.38404 1.05396 1.42420 0.85749 0.80502 0.77075 0.79257 1.18902 1.20599 1.20663 1.77285 1.21573 0.94759 1.20343 0.91385 0.88117 0.93595 0.88988 0.87782 0.92728 0.90253 0.77848 0.82742 0.89188 0.91694 0.84702 0.87454 0.93969 0.94451 0.97794 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.52 71.98 0.69 -0.91 16 2 C 0.14 1.97 3.93 44.99 0.18 2.15 16 3 C -0.16 -1.26 8.84 71.98 0.64 -0.62 16 4 N -0.37 -7.74 3.52 -327.50 -1.15 -8.89 16 5 C 0.06 1.08 10.59 83.54 0.89 1.97 16 6 C -0.29 -6.36 10.74 21.99 0.24 -6.13 16 7 C 0.06 1.63 6.73 43.10 0.29 1.92 16 8 C 0.14 3.46 6.24 85.56 0.53 4.00 16 9 N -0.69 -19.45 6.49 -517.91 -3.36 -22.80 16 10 C 0.08 2.35 5.12 86.31 0.44 2.79 16 11 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 12 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 13 C 0.25 10.34 12.98 89.44 1.16 11.50 16 14 N -0.50 -22.28 18.54 20.00 0.37 -21.91 16 15 C 0.04 1.85 4.42 29.85 0.13 1.98 16 16 C -0.54 -29.23 8.60 25.60 0.22 -29.01 16 17 H 0.05 2.81 7.59 -2.92 -0.02 2.79 16 18 C 0.01 0.64 5.46 84.66 0.46 1.10 16 19 N -0.92 -53.53 13.29 21.45 0.28 -53.25 16 20 Si 0.95 44.09 29.54 68.60 2.03 46.11 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 24 N -0.32 -8.94 12.58 -47.38 -0.60 -9.53 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 29 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.42 7.16 -2.39 -0.02 0.41 16 32 H 0.20 1.92 7.27 -2.91 -0.02 1.90 16 33 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.34 9.98 7.80 -89.70 -0.70 9.28 16 37 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -69.11 352.88 3.72 -65.40 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.31 Total: 13.45 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.83 Total: -8.57 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -4.45 Total: -116.38 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -69.11 3.72 -65.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564855394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.105 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds