Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46863 * 2 1 4 4 C 1.50706 * 109.46805 * 240.00941 * 2 1 3 5 5 N 1.30401 * 119.28712 * 265.69542 * 4 2 1 6 6 C 1.33784 * 122.02960 * 179.76033 * 5 4 2 7 7 C 1.35652 * 120.40907 * 0.51149 * 6 5 4 8 8 C 1.41986 * 118.59907 * 359.75877 * 7 6 5 9 9 N 1.31475 * 120.91887 * 180.02562 * 8 7 6 10 10 N 1.35657 * 119.29317 * 85.96924 * 4 2 1 11 11 H 0.97001 * 120.31291 * 359.95236 * 10 4 2 12 12 N 1.46898 * 109.47286 * 120.00616 * 2 1 3 13 13 C 1.46841 * 110.99936 * 183.65702 * 12 2 1 14 14 C 1.53033 * 109.52636 * 185.84165 * 13 12 2 15 15 C 1.53120 * 109.27737 * 300.82126 * 14 13 12 16 16 C 1.50700 * 109.52395 * 177.55660 * 15 14 13 17 17 H 1.08001 * 120.00208 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99606 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00196 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99552 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47125 * 90.00038 * 20 18 16 22 22 H 1.48495 * 109.46805 * 209.99710 * 20 18 16 23 23 H 1.48498 * 109.47110 * 329.99991 * 20 18 16 24 24 C 1.53122 * 109.16054 * 57.65262 * 15 14 13 25 25 C 1.46840 * 110.99961 * 307.86583 * 12 2 1 26 26 H 1.09001 * 109.47465 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47042 * 299.99185 * 1 2 3 28 28 H 1.09000 * 109.47448 * 59.98840 * 1 2 3 29 29 H 1.07994 * 119.79612 * 180.28821 * 6 5 4 30 30 H 1.07996 * 120.69754 * 179.73083 * 7 6 5 31 31 H 0.97003 * 119.99783 * 359.96796 * 9 8 7 32 32 H 1.09005 * 109.46245 * 65.82192 * 13 12 2 33 33 H 1.09008 * 109.45669 * 305.84980 * 13 12 2 34 34 H 1.09001 * 109.51078 * 180.88302 * 14 13 12 35 35 H 1.08997 * 109.50313 * 60.75579 * 14 13 12 36 36 H 1.09000 * 109.52126 * 297.75155 * 15 14 13 37 37 H 0.96999 * 119.99808 * 180.02562 * 19 18 16 38 38 H 1.08997 * 109.50495 * 62.28158 * 24 15 14 39 39 H 1.09000 * 109.50668 * 182.40692 * 24 15 14 40 40 H 1.08994 * 109.46854 * 294.17716 * 25 12 2 41 41 H 1.09008 * 109.46140 * 54.14558 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 7 2.3254 -1.9789 -1.1600 6 6 2.7708 -2.6643 -2.2191 7 6 2.9428 -2.0460 -3.4142 8 6 2.6355 -0.6634 -3.5146 9 7 2.7847 -0.0190 -4.6509 10 7 2.1751 -0.0147 -2.3866 11 1 1.9554 0.9295 -2.4202 12 7 2.0197 -0.6926 1.1993 13 6 3.4850 -0.6369 1.2777 14 6 3.9669 -1.4883 2.4545 15 6 3.3473 -0.9572 3.7500 16 6 3.7705 -1.8281 4.9048 17 1 4.4172 -2.6759 4.7331 18 6 3.3320 -1.5426 6.1804 19 7 2.5450 -0.5100 6.3895 20 14 3.8573 -2.6217 7.6119 21 1 5.1170 -2.0932 8.1941 22 1 2.7942 -2.6206 8.6487 23 1 4.0781 -4.0092 7.1309 24 6 1.8215 -0.9806 3.6238 25 6 1.4018 -0.1438 2.4131 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 2.9983 -3.7154 -2.1211 30 1 3.3062 -2.5937 -4.2711 31 1 3.1093 -0.4881 -5.4355 32 1 3.8019 0.3959 1.4228 33 1 3.9130 -1.0215 0.3519 34 1 5.0535 -1.4342 2.5220 35 1 3.6622 -2.5239 2.3033 36 1 3.6829 0.0656 3.9217 37 1 2.2368 -0.3089 7.2870 38 1 1.4830 -2.0081 3.4909 39 1 1.3752 -0.5637 4.5266 40 1 1.7284 0.8866 2.5530 41 1 0.3167 -0.1701 2.3120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567483199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = 67.665100 kcal Electronic energy + Delta-G solvation = -21792.806460 eV Core-core repulsion = 18708.133711 eV Total energy + Delta-G solvation = -3084.672750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16835 -38.50441 -35.44217 -34.87068 -33.48277 -31.96216 -30.11411 -29.59896 -29.08925 -25.77540 -24.87832 -23.64405 -22.25824 -21.89038 -20.43579 -18.74003 -18.40960 -17.53631 -16.83354 -16.35826 -15.46554 -15.32904 -14.90747 -14.67914 -14.44969 -14.07450 -13.31915 -13.19653 -12.76315 -12.70273 -12.57861 -12.09247 -11.91597 -11.55746 -11.43222 -11.11919 -10.93361 -10.79557 -10.57277 -10.40063 -10.20014 -9.99673 -9.91032 -9.45783 -9.41081 -8.94023 -8.68574 -8.27485 -7.82498 -7.79534 -5.95842 -4.00289 0.65841 1.90058 2.45778 3.32786 3.39673 3.43623 3.57930 3.88723 4.15347 4.47174 4.55409 4.75342 5.00674 5.02520 5.09549 5.30234 5.34750 5.46294 5.64796 5.76669 5.79292 5.85109 5.99901 6.06755 6.11176 6.16438 6.32797 6.35752 6.58760 6.64764 6.89197 6.95665 7.09154 7.16608 7.39864 7.58504 7.61189 7.82784 7.98392 8.07479 8.16575 8.17124 8.50970 9.03234 9.64001 11.10467 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.004041 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.899275 B = 6927.879371 C = 7362.854829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.127 3.873 3 H 0.060 0.940 4 C 0.418 3.582 5 N -0.513 5.513 6 C 0.150 3.850 7 C -0.298 4.298 8 C 0.426 3.574 9 N -0.794 5.794 10 N -0.614 5.614 11 H 0.418 0.582 12 N -0.504 5.504 13 C 0.063 3.937 14 C -0.102 4.102 15 C 0.047 3.953 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.102 4.102 25 C 0.053 3.947 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.159 0.841 30 H 0.140 0.860 31 H 0.349 0.651 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.024 0.976 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 0.797 -15.414 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.078 0.922 4 C 0.152 3.848 5 N -0.234 5.234 6 C 0.011 3.989 7 C -0.326 4.326 8 C 0.153 3.847 9 N -0.429 5.429 10 N -0.238 5.238 11 H 0.256 0.744 12 N -0.229 5.229 13 C -0.065 4.065 14 C -0.140 4.140 15 C 0.029 3.971 16 C -0.546 4.546 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.141 4.141 25 C -0.073 4.073 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.176 0.824 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.042 0.958 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.756 0.739 -14.979 15.460 hybrid contribution 0.956 0.031 -0.310 1.005 sum -2.800 0.770 -15.288 15.562 Atomic orbital electron populations 1.21961 0.91709 1.04125 1.02642 1.20579 0.96626 0.94018 0.87228 0.92204 1.23349 0.86790 0.88698 0.85965 1.68329 1.20586 1.04787 1.29732 1.22512 0.88771 1.00095 0.87558 1.22649 1.14205 0.94352 1.01392 1.18733 0.90047 0.88292 0.87655 1.69521 1.31703 1.41186 1.00465 1.42939 1.58290 1.14411 1.08191 0.74426 1.61885 1.07138 1.53956 0.99963 1.22151 0.86422 0.98069 0.99841 1.21623 0.98494 0.99245 0.94591 1.18699 0.91618 0.96131 0.90693 1.21212 1.29238 1.12379 0.91806 0.92768 1.24954 0.95134 0.95198 0.98698 1.69863 1.34578 1.27544 1.21260 0.86647 0.78155 0.81113 0.82389 1.20882 1.21330 1.19941 1.21659 0.99704 0.98040 0.94654 1.22457 0.97932 0.96864 0.90070 0.90490 0.90079 0.92369 0.82366 0.84188 0.83485 0.96223 0.92405 0.93412 0.92062 0.96257 0.93152 0.93503 0.88838 0.95808 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.69 37.16 0.32 -1.21 16 2 C 0.13 1.59 2.45 -68.86 -0.17 1.42 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.42 5.28 5.84 -154.93 -0.90 4.38 16 5 N -0.51 -7.20 8.71 -10.54 -0.09 -7.29 16 6 C 0.15 1.77 11.16 -17.63 -0.20 1.57 16 7 C -0.30 -3.33 9.97 -39.07 -0.39 -3.72 16 8 C 0.43 5.30 7.87 -155.64 -1.22 4.08 16 9 N -0.79 -10.29 14.19 31.38 0.45 -9.85 16 10 N -0.61 -6.97 5.42 -9.29 -0.05 -7.02 16 11 H 0.42 3.93 8.82 -40.82 -0.36 3.57 16 12 N -0.50 -8.18 4.14 -228.08 -0.94 -9.12 16 13 C 0.06 1.10 5.16 -3.84 -0.02 1.08 16 14 C -0.10 -2.11 5.32 -26.65 -0.14 -2.25 16 15 C 0.05 1.14 2.16 -91.65 -0.20 0.94 16 16 C -0.51 -13.73 8.56 -34.44 -0.29 -14.03 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 19 N -0.89 -24.88 11.37 55.43 0.63 -24.25 16 20 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.10 -2.29 5.12 -26.65 -0.14 -2.43 16 25 C 0.05 0.94 5.04 -3.83 -0.02 0.92 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 0.83 6.19 -51.93 -0.32 0.51 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.35 3.97 8.77 -40.82 -0.36 3.61 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.97 6.40 -51.92 -0.33 0.64 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 2.34 6.17 -51.93 -0.32 2.02 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 1.01 5.84 -51.92 -0.30 0.71 16 LS Contribution 325.00 15.07 4.90 4.90 Total: -1.00 -29.71 325.00 -9.79 -39.50 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.19 Total: 4.76 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -3.47 Total: -7.69 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.01 Total: -57.54 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.71 -9.79 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567483199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.169 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds