Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46863 * 2 1 4 4 C 1.50706 * 109.46805 * 240.00941 * 2 1 3 5 5 N 1.30401 * 119.28712 * 265.69542 * 4 2 1 6 6 C 1.33784 * 122.02960 * 179.76033 * 5 4 2 7 7 C 1.35652 * 120.40907 * 0.51149 * 6 5 4 8 8 C 1.41986 * 118.59907 * 359.75877 * 7 6 5 9 9 N 1.31475 * 120.91887 * 180.02562 * 8 7 6 10 10 N 1.35657 * 119.29317 * 85.96924 * 4 2 1 11 11 H 0.97001 * 120.31291 * 359.95236 * 10 4 2 12 12 N 1.46898 * 109.47286 * 120.00616 * 2 1 3 13 13 C 1.46841 * 110.99936 * 183.65702 * 12 2 1 14 14 C 1.53033 * 109.52636 * 185.84165 * 13 12 2 15 15 C 1.53120 * 109.27737 * 300.82126 * 14 13 12 16 16 C 1.50700 * 109.52395 * 177.55660 * 15 14 13 17 17 H 1.08001 * 120.00208 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99606 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00196 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99552 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47125 * 90.00038 * 20 18 16 22 22 H 1.48495 * 109.46805 * 209.99710 * 20 18 16 23 23 H 1.48498 * 109.47110 * 329.99991 * 20 18 16 24 24 C 1.53122 * 109.16054 * 57.65262 * 15 14 13 25 25 C 1.46840 * 110.99961 * 307.86583 * 12 2 1 26 26 H 1.09001 * 109.47465 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47042 * 299.99185 * 1 2 3 28 28 H 1.09000 * 109.47448 * 59.98840 * 1 2 3 29 29 H 1.07994 * 119.79612 * 180.28821 * 6 5 4 30 30 H 1.07996 * 120.69754 * 179.73083 * 7 6 5 31 31 H 0.97003 * 119.99783 * 359.96796 * 9 8 7 32 32 H 1.09005 * 109.46245 * 65.82192 * 13 12 2 33 33 H 1.09008 * 109.45669 * 305.84980 * 13 12 2 34 34 H 1.09001 * 109.51078 * 180.88302 * 14 13 12 35 35 H 1.08997 * 109.50313 * 60.75579 * 14 13 12 36 36 H 1.09000 * 109.52126 * 297.75155 * 15 14 13 37 37 H 0.96999 * 119.99808 * 180.02562 * 19 18 16 38 38 H 1.08997 * 109.50495 * 62.28158 * 24 15 14 39 39 H 1.09000 * 109.50668 * 182.40692 * 24 15 14 40 40 H 1.08994 * 109.46854 * 294.17716 * 25 12 2 41 41 H 1.09008 * 109.46140 * 54.14558 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 7 2.3254 -1.9789 -1.1600 6 6 2.7708 -2.6643 -2.2191 7 6 2.9428 -2.0460 -3.4142 8 6 2.6355 -0.6634 -3.5146 9 7 2.7847 -0.0190 -4.6509 10 7 2.1751 -0.0147 -2.3866 11 1 1.9554 0.9295 -2.4202 12 7 2.0197 -0.6926 1.1993 13 6 3.4850 -0.6369 1.2777 14 6 3.9669 -1.4883 2.4545 15 6 3.3473 -0.9572 3.7500 16 6 3.7705 -1.8281 4.9048 17 1 4.4172 -2.6759 4.7331 18 6 3.3320 -1.5426 6.1804 19 7 2.5450 -0.5100 6.3895 20 14 3.8573 -2.6217 7.6119 21 1 5.1170 -2.0932 8.1941 22 1 2.7942 -2.6206 8.6487 23 1 4.0781 -4.0092 7.1309 24 6 1.8215 -0.9806 3.6238 25 6 1.4018 -0.1438 2.4131 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 2.9983 -3.7154 -2.1211 30 1 3.3062 -2.5937 -4.2711 31 1 3.1093 -0.4881 -5.4355 32 1 3.8019 0.3959 1.4228 33 1 3.9130 -1.0215 0.3519 34 1 5.0535 -1.4342 2.5220 35 1 3.6622 -2.5239 2.3033 36 1 3.6829 0.0656 3.9217 37 1 2.2368 -0.3089 7.2870 38 1 1.4830 -2.0081 3.4909 39 1 1.3752 -0.5637 4.5266 40 1 1.7284 0.8866 2.5530 41 1 0.3167 -0.1701 2.3120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567483199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = 48.797380 kcal Electronic energy + Delta-G solvation = -21793.624626 eV Core-core repulsion = 18708.133711 eV Total energy + Delta-G solvation = -3085.490915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.11168 -39.87233 -36.72360 -35.93813 -34.82050 -33.54380 -31.56967 -30.97007 -30.16784 -27.40947 -26.08733 -24.58155 -23.80059 -23.39552 -21.63567 -20.31709 -19.40625 -18.49816 -18.37805 -17.81646 -16.80051 -16.38298 -16.26046 -15.97260 -15.52880 -15.33306 -14.85864 -14.43706 -14.35974 -14.13114 -13.92234 -13.43219 -13.14114 -12.89834 -12.70976 -12.56238 -12.42510 -12.31070 -12.17494 -11.96430 -11.79783 -11.44619 -11.28238 -10.91789 -10.72113 -10.54897 -10.38211 -10.31468 -9.12357 -8.71945 -8.03719 -6.15571 -0.23249 0.95715 1.43148 1.44729 1.54104 1.54468 2.47463 2.66851 2.90163 3.04396 3.23485 3.66470 3.84447 4.04642 4.13180 4.21921 4.29862 4.35653 4.43303 4.50937 4.61756 4.76505 4.80387 4.84500 4.93665 4.99628 5.01763 5.18013 5.18984 5.27073 5.32872 5.42700 5.46566 5.63196 5.68880 6.04903 6.07976 6.12566 6.30397 6.36133 6.47898 6.95158 7.07369 7.27383 7.51509 9.00635 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.004041 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.899275 B = 6927.879371 C = 7362.854829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.127 3.873 3 H 0.081 0.919 4 C 0.417 3.583 5 N -0.543 5.543 6 C 0.139 3.861 7 C -0.293 4.293 8 C 0.417 3.583 9 N -0.810 5.810 10 N -0.606 5.606 11 H 0.427 0.573 12 N -0.513 5.513 13 C 0.075 3.925 14 C -0.094 4.094 15 C 0.044 3.956 16 C -0.532 4.532 17 H 0.046 0.954 18 C 0.015 3.985 19 N -0.915 5.915 20 Si 0.948 3.052 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.271 1.271 24 C -0.093 4.093 25 C 0.066 3.934 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.178 0.822 30 H 0.162 0.838 31 H 0.355 0.645 32 H 0.021 0.979 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.049 0.951 36 H -0.010 1.010 37 H 0.260 0.740 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 0.856 -16.785 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 H 0.099 0.901 4 C 0.151 3.849 5 N -0.265 5.265 6 C 0.001 3.999 7 C -0.321 4.321 8 C 0.144 3.856 9 N -0.446 5.446 10 N -0.231 5.231 11 H 0.266 0.734 12 N -0.238 5.238 13 C -0.053 4.053 14 C -0.131 4.131 15 C 0.026 3.974 16 C -0.570 4.570 17 H 0.065 0.935 18 C -0.183 4.183 19 N -0.554 5.554 20 Si 0.775 3.225 21 H -0.204 1.204 22 H -0.208 1.208 23 H -0.196 1.196 24 C -0.132 4.132 25 C -0.061 4.061 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.195 0.805 30 H 0.179 0.821 31 H 0.172 0.828 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.008 0.992 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.142 0.805 -16.369 16.905 hybrid contribution 1.093 0.004 0.079 1.096 sum -3.050 0.809 -16.290 16.593 Atomic orbital electron populations 1.21954 0.89995 1.03815 1.04213 1.20701 0.97918 0.94499 0.85278 0.90102 1.23209 0.86958 0.88549 0.86203 1.68284 1.21416 1.05626 1.31142 1.22812 0.88840 1.00998 0.87299 1.22874 1.13322 0.93925 1.01948 1.18979 0.89999 0.88948 0.87724 1.69514 1.32358 1.41790 1.00938 1.42833 1.57814 1.14796 1.07614 0.73360 1.61717 1.06149 1.55156 1.00789 1.21946 0.87537 0.97322 0.98529 1.21457 0.98196 0.99022 0.94468 1.18668 0.93087 0.93998 0.91649 1.21579 1.29424 1.12696 0.93346 0.93544 1.25658 0.95208 0.96420 1.01025 1.69987 1.35131 1.28607 1.21717 0.85707 0.77870 0.79538 0.79426 1.20423 1.20811 1.19607 1.21397 0.98137 0.97697 0.95959 1.22211 0.99453 0.95539 0.88870 0.91710 0.89643 0.89681 0.80490 0.82066 0.82816 0.96061 0.91280 0.93670 0.93217 0.99172 0.93113 0.95122 0.91794 0.95856 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.69 71.98 0.63 -1.95 16 2 C 0.13 2.85 2.45 44.17 0.11 2.96 16 3 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 4 C 0.42 9.59 5.84 137.96 0.81 10.40 16 5 N -0.54 -14.24 8.71 -187.27 -1.63 -15.87 16 6 C 0.14 3.00 11.16 83.80 0.94 3.94 16 7 C -0.29 -5.86 9.97 22.60 0.23 -5.64 16 8 C 0.42 9.44 7.87 134.38 1.06 10.50 16 9 N -0.81 -19.36 14.19 -54.62 -0.78 -20.13 16 10 N -0.61 -12.26 5.42 -183.32 -0.99 -13.26 16 11 H 0.43 6.88 8.82 -92.71 -0.82 6.06 16 12 N -0.51 -15.92 4.14 -875.51 -3.62 -19.55 16 13 C 0.07 2.54 5.16 86.33 0.45 2.98 16 14 C -0.09 -3.92 5.32 30.65 0.16 -3.76 16 15 C 0.04 2.21 2.16 -11.46 -0.02 2.18 16 16 C -0.53 -29.52 8.56 25.60 0.22 -29.30 16 17 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 18 C 0.02 0.85 5.31 84.66 0.45 1.30 16 19 N -0.91 -51.98 11.37 21.45 0.24 -51.74 16 20 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 C -0.09 -4.27 5.12 30.65 0.16 -4.11 16 25 C 0.07 2.27 5.04 86.33 0.44 2.71 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.49 6.19 -2.39 -0.01 1.47 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.35 7.41 8.77 -92.71 -0.81 6.60 16 32 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.07 2.22 6.40 -2.38 -0.02 2.20 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.26 14.07 8.31 -92.71 -0.77 13.29 16 38 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 3.29 6.17 -2.39 -0.01 3.28 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 2.67 5.84 -2.38 -0.01 2.65 16 Total: -1.00 -64.54 325.00 0.26 -64.28 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -0.58 Total: 18.34 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 5.60 Total: -7.79 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -6.78 Total: -120.54 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -64.54 0.26 -64.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567483199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.081 kcal (2) G-P(sol) polarization free energy of solvation -64.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds