Wall clock time and date at job start Mon Mar 30 2020 01:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48494 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47398 * 300.00235 * 3 2 1 6 6 H 1.48506 * 109.46977 * 60.00061 * 3 2 1 7 7 C 1.37871 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47423 * 180.02562 * 9 7 2 11 11 C 1.53119 * 109.52802 * 175.00103 * 10 9 7 12 12 C 1.53029 * 109.28242 * 177.55573 * 11 10 9 13 13 N 1.46844 * 109.52472 * 300.82296 * 12 11 10 14 14 C 1.46906 * 111.00112 * 185.83685 * 13 12 11 15 15 C 1.50703 * 109.47109 * 169.99735 * 14 13 12 16 16 N 1.30408 * 119.28972 * 274.72873 * 15 14 13 17 17 C 1.33784 * 122.02663 * 179.75463 * 16 15 14 18 18 C 1.35645 * 120.41234 * 0.52208 * 17 16 15 19 19 C 1.41991 * 118.59870 * 359.74494 * 18 17 16 20 20 N 1.31477 * 120.91697 * 179.97438 * 19 18 17 21 21 N 1.35658 * 119.29264 * 95.00226 * 15 14 13 22 22 H 0.97006 * 120.30506 * 359.97438 * 21 15 14 23 23 C 1.46846 * 111.20030 * 61.74139 * 13 12 11 24 24 C 1.53035 * 109.52070 * 298.25549 * 23 13 12 25 25 H 0.97002 * 119.99959 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47123 * 60.00180 * 9 7 2 27 27 H 1.09005 * 109.47386 * 300.00070 * 9 7 2 28 28 H 1.08999 * 109.52496 * 54.86790 * 10 9 7 29 29 H 1.08999 * 109.50171 * 57.61281 * 11 10 9 30 30 H 1.09001 * 109.52926 * 297.52048 * 11 10 9 31 31 H 1.09001 * 109.46618 * 180.80104 * 12 11 10 32 32 H 1.09002 * 109.45593 * 60.83240 * 12 11 10 33 33 H 1.08992 * 109.47459 * 289.99654 * 14 13 12 34 34 H 1.09004 * 109.47040 * 49.99804 * 14 13 12 35 35 H 1.08001 * 119.79115 * 180.24780 * 17 16 15 36 36 H 1.08000 * 120.70132 * 179.77670 * 18 17 16 37 37 H 0.97000 * 119.99778 * 0.02562 * 20 19 18 38 38 H 1.08992 * 109.46292 * 58.27317 * 23 13 12 39 39 H 1.09001 * 109.46243 * 178.24340 * 23 13 12 40 40 H 1.08997 * 109.51198 * 299.24261 * 24 23 13 41 41 H 1.09002 * 109.50588 * 179.11720 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4850 -4.9853 0.1252 12 6 2.4791 -6.1470 0.0633 13 7 3.2095 -6.1006 -1.2097 14 6 4.0735 -7.2786 -1.3642 15 6 4.6140 -7.3243 -2.7702 16 7 3.9005 -7.8793 -3.7103 17 6 4.3247 -7.9456 -4.9773 18 6 5.5339 -7.4381 -5.3241 19 6 6.3314 -6.8335 -4.3168 20 7 7.5109 -6.3275 -4.6022 21 7 5.8346 -6.7922 -3.0298 22 1 6.3532 -6.3865 -2.3175 23 6 3.9850 -4.8596 -1.3321 24 6 3.0357 -3.6594 -1.3119 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.9312 -3.5548 0.8396 29 1 0.7705 -5.0737 -0.6932 30 1 0.9536 -5.0112 1.0766 31 1 1.9395 -7.0912 0.1383 32 1 3.1847 -6.0655 0.8901 33 1 4.9018 -7.2168 -0.6585 34 1 3.4954 -8.1816 -1.1676 35 1 3.7024 -8.4101 -5.7279 36 1 5.8825 -7.4923 -6.3448 37 1 7.8472 -6.3638 -5.5113 38 1 4.6835 -4.7843 -0.4988 39 1 4.5391 -4.8687 -2.2707 40 1 2.3456 -3.7269 -2.1529 41 1 3.6128 -2.7377 -1.3870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571320270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:36 Heat of formation + Delta-G solvation = 52.770838 kcal Electronic energy + Delta-G solvation = -21266.513013 eV Core-core repulsion = 18181.194400 eV Total energy + Delta-G solvation = -3085.318613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23677 -38.81024 -35.53993 -34.99836 -33.68327 -32.24816 -30.49979 -30.14921 -28.53984 -26.37461 -24.10708 -23.61914 -22.96564 -21.97058 -20.72298 -19.02019 -18.61438 -17.64526 -16.87500 -16.38964 -16.11813 -15.05790 -14.98395 -14.72020 -14.66633 -14.46736 -13.67587 -13.56706 -13.16639 -12.77834 -12.47439 -12.23666 -12.03595 -11.76740 -11.66457 -11.15465 -10.89199 -10.72561 -10.70541 -10.65900 -10.31791 -10.21199 -10.00185 -9.60022 -9.56168 -9.11348 -8.89933 -8.37459 -8.32362 -7.91275 -5.98387 -3.99959 0.52628 1.76933 2.40548 3.31154 3.37747 3.39142 3.42428 3.72074 3.97744 4.36159 4.46876 4.66509 4.84669 4.98596 5.09579 5.16540 5.25347 5.33882 5.37301 5.46087 5.56761 5.67150 5.75810 5.82592 5.91878 6.02296 6.13643 6.26074 6.34182 6.47025 6.58633 6.85184 6.89909 6.97893 7.11634 7.14508 7.19120 7.69277 7.76909 7.85100 8.02128 8.09031 8.44788 9.06829 9.63867 11.12933 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.003944 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.439537 B = 7097.340581 C = 7871.766960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.112 4.112 12 C 0.062 3.938 13 N -0.524 5.524 14 C 0.100 3.900 15 C 0.425 3.575 16 N -0.537 5.537 17 C 0.147 3.853 18 C -0.288 4.288 19 C 0.422 3.578 20 N -0.785 5.785 21 N -0.612 5.612 22 H 0.419 0.581 23 C 0.047 3.953 24 C -0.098 4.098 25 H 0.259 0.741 26 H 0.017 0.983 27 H 0.015 0.985 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.118 0.882 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.350 0.650 38 H 0.034 0.966 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -17.950 -4.909 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.065 4.065 13 N -0.250 5.250 14 C -0.030 4.030 15 C 0.158 3.842 16 N -0.260 5.260 17 C 0.008 3.992 18 C -0.316 4.316 19 C 0.148 3.852 20 N -0.419 5.419 21 N -0.237 5.237 22 H 0.258 0.742 23 C -0.081 4.081 24 C -0.135 4.135 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.361 -17.757 -4.790 20.203 hybrid contribution 1.713 1.209 -0.452 2.145 sum 10.074 -16.547 -5.242 20.069 Atomic orbital electron populations 1.69974 1.06014 1.26371 1.51129 1.25009 0.94790 0.99131 0.95504 0.86611 0.80139 0.84147 0.77557 1.19813 1.21075 1.21088 1.21283 0.92928 0.91043 1.50076 0.92698 1.19115 0.93607 0.90998 0.97208 1.21250 0.97944 0.94923 0.95920 1.21706 0.97511 0.93915 1.01889 1.22151 0.96294 1.00212 0.87803 1.61913 1.26836 1.00345 1.35920 1.21137 0.97117 0.97889 0.86877 1.23135 0.79708 0.84374 0.96967 1.68121 1.32766 1.24235 1.00868 1.22358 0.92933 0.91426 0.92453 1.22662 0.98727 1.09816 1.00402 1.18744 0.91416 0.91228 0.83768 1.69525 1.12749 1.30785 1.28837 1.43054 1.17729 1.52795 1.10088 0.74200 1.22390 0.95763 0.90322 0.99605 1.21527 0.97764 0.95111 0.99147 0.93133 0.96466 0.96672 0.92905 0.91323 0.91715 0.90850 0.94826 0.92407 0.86428 0.82315 0.83985 0.83289 0.94798 0.92077 0.91735 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.16 8.44 -34.44 -0.29 -14.45 16 8 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 9 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 10 C -0.08 -1.58 2.20 -90.49 -0.20 -1.78 16 11 C -0.11 -1.79 5.38 -26.65 -0.14 -1.93 16 12 C 0.06 0.77 5.46 -3.84 -0.02 0.75 16 13 N -0.52 -6.61 4.65 -236.12 -1.10 -7.71 16 14 C 0.10 0.94 5.35 -4.97 -0.03 0.92 16 15 C 0.42 4.61 6.34 -154.93 -0.98 3.62 16 16 N -0.54 -6.34 10.26 -10.54 -0.11 -6.45 16 17 C 0.15 1.50 11.16 -17.63 -0.20 1.30 16 18 C -0.29 -2.96 9.97 -39.07 -0.39 -3.35 16 19 C 0.42 5.06 7.87 -155.65 -1.22 3.83 16 20 N -0.79 -10.12 14.19 31.38 0.45 -9.68 16 21 N -0.61 -6.55 4.56 -9.29 -0.04 -6.59 16 22 H 0.42 3.95 8.78 -40.82 -0.36 3.59 16 23 C 0.05 0.66 5.30 -3.84 -0.02 0.64 16 24 C -0.10 -1.77 5.15 -26.65 -0.14 -1.91 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.12 0.96 7.99 -51.93 -0.41 0.55 16 35 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.35 3.95 8.77 -40.82 -0.36 3.59 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.47 7.05 -51.93 -0.37 1.10 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -31.89 332.11 -10.34 -42.23 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.40 Total: 2.95 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.85 Total: -10.29 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.07 Total: -56.45 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.89 -10.34 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571320270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.996 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds