Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48494 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47398 * 300.00235 * 3 2 1 6 6 H 1.48506 * 109.46977 * 60.00061 * 3 2 1 7 7 C 1.37871 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47423 * 180.02562 * 9 7 2 11 11 C 1.53119 * 109.52802 * 175.00103 * 10 9 7 12 12 C 1.53029 * 109.28242 * 177.55573 * 11 10 9 13 13 N 1.46844 * 109.52472 * 300.82296 * 12 11 10 14 14 C 1.46906 * 111.00112 * 185.83685 * 13 12 11 15 15 C 1.50703 * 109.47109 * 169.99735 * 14 13 12 16 16 N 1.30408 * 119.28972 * 274.72873 * 15 14 13 17 17 C 1.33784 * 122.02663 * 179.75463 * 16 15 14 18 18 C 1.35645 * 120.41234 * 0.52208 * 17 16 15 19 19 C 1.41991 * 118.59870 * 359.74494 * 18 17 16 20 20 N 1.31477 * 120.91697 * 179.97438 * 19 18 17 21 21 N 1.35658 * 119.29264 * 95.00226 * 15 14 13 22 22 H 0.97006 * 120.30506 * 359.97438 * 21 15 14 23 23 C 1.46846 * 111.20030 * 61.74139 * 13 12 11 24 24 C 1.53035 * 109.52070 * 298.25549 * 23 13 12 25 25 H 0.97002 * 119.99959 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47123 * 60.00180 * 9 7 2 27 27 H 1.09005 * 109.47386 * 300.00070 * 9 7 2 28 28 H 1.08999 * 109.52496 * 54.86790 * 10 9 7 29 29 H 1.08999 * 109.50171 * 57.61281 * 11 10 9 30 30 H 1.09001 * 109.52926 * 297.52048 * 11 10 9 31 31 H 1.09001 * 109.46618 * 180.80104 * 12 11 10 32 32 H 1.09002 * 109.45593 * 60.83240 * 12 11 10 33 33 H 1.08992 * 109.47459 * 289.99654 * 14 13 12 34 34 H 1.09004 * 109.47040 * 49.99804 * 14 13 12 35 35 H 1.08001 * 119.79115 * 180.24780 * 17 16 15 36 36 H 1.08000 * 120.70132 * 179.77670 * 18 17 16 37 37 H 0.97000 * 119.99778 * 0.02562 * 20 19 18 38 38 H 1.08992 * 109.46292 * 58.27317 * 23 13 12 39 39 H 1.09001 * 109.46243 * 178.24340 * 23 13 12 40 40 H 1.08997 * 109.51198 * 299.24261 * 24 23 13 41 41 H 1.09002 * 109.50588 * 179.11720 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4850 -4.9853 0.1252 12 6 2.4791 -6.1470 0.0633 13 7 3.2095 -6.1006 -1.2097 14 6 4.0735 -7.2786 -1.3642 15 6 4.6140 -7.3243 -2.7702 16 7 3.9005 -7.8793 -3.7103 17 6 4.3247 -7.9456 -4.9773 18 6 5.5339 -7.4381 -5.3241 19 6 6.3314 -6.8335 -4.3168 20 7 7.5109 -6.3275 -4.6022 21 7 5.8346 -6.7922 -3.0298 22 1 6.3532 -6.3865 -2.3175 23 6 3.9850 -4.8596 -1.3321 24 6 3.0357 -3.6594 -1.3119 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.9312 -3.5548 0.8396 29 1 0.7705 -5.0737 -0.6932 30 1 0.9536 -5.0112 1.0766 31 1 1.9395 -7.0912 0.1383 32 1 3.1847 -6.0655 0.8901 33 1 4.9018 -7.2168 -0.6585 34 1 3.4954 -8.1816 -1.1676 35 1 3.7024 -8.4101 -5.7279 36 1 5.8825 -7.4923 -6.3448 37 1 7.8472 -6.3638 -5.5113 38 1 4.6835 -4.7843 -0.4988 39 1 4.5391 -4.8687 -2.2707 40 1 2.3456 -3.7269 -2.1529 41 1 3.6128 -2.7377 -1.3870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571320270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = 31.360747 kcal Electronic energy + Delta-G solvation = -21267.441425 eV Core-core repulsion = 18181.194400 eV Total energy + Delta-G solvation = -3086.247024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.05591 -39.97299 -36.64691 -36.06257 -34.95310 -33.95308 -31.71131 -31.17087 -29.90991 -27.71354 -25.48796 -24.68336 -24.16755 -23.07693 -22.10065 -20.43977 -19.42729 -18.46168 -18.42014 -17.74707 -17.20781 -16.52522 -16.01311 -15.80012 -15.64930 -15.51929 -15.05826 -14.85855 -14.46931 -14.15713 -13.82527 -13.38231 -13.29996 -13.05663 -12.91513 -12.75364 -12.55424 -12.36355 -12.18109 -12.00192 -11.66770 -11.51477 -11.24994 -11.05625 -10.89668 -10.68833 -10.52309 -10.43273 -9.29968 -8.76059 -8.17389 -6.26541 -0.25807 0.91198 1.38222 1.39200 1.51318 1.60849 2.41205 2.54278 2.96615 3.07393 3.16246 3.62475 3.86589 3.98054 4.01256 4.13860 4.24332 4.31681 4.35079 4.42970 4.54286 4.62541 4.66136 4.78983 4.84074 4.90616 4.96529 5.09012 5.16892 5.19167 5.40799 5.43837 5.45571 5.46186 5.60006 5.81798 5.90218 6.03179 6.06046 6.14339 6.30759 6.90597 6.97100 7.24935 7.41996 8.94670 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.003944 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.439537 B = 7097.340581 C = 7871.766960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.074 4.074 11 C -0.109 4.109 12 C 0.071 3.929 13 N -0.540 5.540 14 C 0.103 3.897 15 C 0.420 3.580 16 N -0.556 5.556 17 C 0.142 3.858 18 C -0.295 4.295 19 C 0.412 3.588 20 N -0.812 5.812 21 N -0.608 5.608 22 H 0.425 0.575 23 C 0.061 3.939 24 C -0.093 4.093 25 H 0.261 0.739 26 H -0.016 1.016 27 H -0.012 1.012 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.185 0.815 36 H 0.161 0.839 37 H 0.354 0.646 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 -19.397 -4.585 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.093 4.093 11 C -0.147 4.147 12 C -0.056 4.056 13 N -0.266 5.266 14 C -0.026 4.026 15 C 0.154 3.846 16 N -0.279 5.279 17 C 0.003 3.997 18 C -0.322 4.322 19 C 0.139 3.861 20 N -0.447 5.447 21 N -0.233 5.233 22 H 0.264 0.736 23 C -0.067 4.067 24 C -0.131 4.131 25 H 0.070 0.930 26 H 0.003 0.997 27 H 0.007 0.993 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.155 0.845 35 H 0.202 0.798 36 H 0.178 0.822 37 H 0.171 0.829 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.906 -19.221 -4.455 22.078 hybrid contribution 1.165 1.641 -0.577 2.094 sum 11.071 -17.580 -5.033 21.376 Atomic orbital electron populations 1.70109 1.07739 1.27416 1.52348 1.25923 0.95657 1.03105 0.95190 0.85514 0.79209 0.79413 0.77634 1.18605 1.20779 1.20423 1.21700 0.93369 0.92222 1.49312 0.92203 1.19021 0.94099 0.93121 0.94251 1.21090 0.96915 0.94564 0.96691 1.21615 0.97963 0.93670 1.01423 1.22073 0.95850 0.99412 0.88228 1.61762 1.27762 1.00716 1.36370 1.21271 0.97922 0.96867 0.86557 1.23431 0.79587 0.84117 0.97512 1.68150 1.33359 1.24750 1.01640 1.22784 0.93203 0.91103 0.92564 1.22870 0.98712 1.09647 1.01014 1.19061 0.91474 0.91002 0.84564 1.69523 1.13628 1.32163 1.29419 1.43085 1.17797 1.52477 1.09939 0.73581 1.22132 0.94737 0.89355 1.00474 1.21376 0.97746 0.96592 0.97415 0.92994 0.99743 0.99314 0.92665 0.93023 0.91377 0.87976 0.93104 0.89411 0.84501 0.79821 0.82187 0.82852 0.93105 0.91869 0.94061 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.53 -29.74 8.44 25.60 0.22 -29.52 16 8 H 0.06 3.24 7.08 -2.91 -0.02 3.22 16 9 C 0.03 1.68 4.45 29.85 0.13 1.81 16 10 C -0.07 -2.88 2.20 -10.71 -0.02 -2.91 16 11 C -0.11 -3.39 5.38 30.64 0.16 -3.22 16 12 C 0.07 1.53 5.46 86.32 0.47 2.00 16 13 N -0.54 -12.09 4.65 -900.95 -4.19 -16.27 16 14 C 0.10 1.55 5.35 85.56 0.46 2.01 16 15 C 0.42 8.02 6.34 137.96 0.87 8.89 16 16 N -0.56 -11.85 10.26 -187.27 -1.92 -13.77 16 17 C 0.14 2.60 11.16 83.79 0.94 3.54 16 18 C -0.29 -5.56 9.97 22.60 0.23 -5.34 16 19 C 0.41 9.29 7.87 134.38 1.06 10.35 16 20 N -0.81 -20.19 14.19 -54.62 -0.78 -20.96 16 21 N -0.61 -11.78 4.56 -183.32 -0.84 -12.62 16 22 H 0.42 7.05 8.78 -92.70 -0.81 6.24 16 23 C 0.06 1.59 5.30 86.33 0.46 2.05 16 24 C -0.09 -3.40 5.15 30.65 0.16 -3.25 16 25 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 26 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 27 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 1.69 8.02 -2.39 -0.02 1.67 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 0.86 8.08 -2.39 -0.02 0.85 16 34 H 0.14 1.61 7.99 -2.38 -0.02 1.59 16 35 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.35 7.77 8.77 -92.71 -0.81 6.96 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.64 6.44 -2.39 -0.02 1.62 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.05 2.10 7.05 -2.39 -0.02 2.09 16 Total: -1.00 -71.01 332.11 -0.41 -71.42 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.59 Total: 15.92 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 5.59 Total: -13.22 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -7.44 Total: -120.83 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.01 -0.41 -71.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571320270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.779 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds