Wall clock time and date at job start Mon Mar 30 2020 01:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30842 * 125.89951 * 2 1 4 4 N 1.40087 * 108.20565 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.03681 * 179.97438 * 4 3 2 6 6 C 1.34940 * 107.92462 * 359.76454 * 4 3 2 7 7 C 1.35319 * 107.74918 * 0.38219 * 6 4 3 8 8 C 1.50702 * 126.04298 * 179.87266 * 7 6 4 9 9 H 1.08993 * 109.46899 * 144.69320 * 8 7 6 10 10 C 1.52998 * 109.47212 * 264.69472 * 8 7 6 11 11 N 1.46893 * 109.46880 * 24.69162 * 8 7 6 12 12 C 1.46910 * 110.99761 * 154.99791 * 11 8 7 13 13 C 1.53002 * 109.46906 * 180.02562 * 12 11 8 14 14 H 1.08996 * 109.47407 * 304.99784 * 13 12 11 15 15 C 1.47206 * 109.47021 * 65.00197 * 13 12 11 16 16 N 6.43429 * 117.75389 * 138.50108 * 2 1 3 17 17 C 1.52997 * 109.46817 * 185.00004 * 13 12 11 18 18 C 1.50698 * 109.46933 * 175.00167 * 17 13 12 19 19 H 1.08003 * 120.00121 * 0.02562 * 18 17 13 20 20 C 1.37882 * 119.99840 * 179.97438 * 18 17 13 21 21 N 1.31510 * 120.00071 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47013 * 60.00187 * 22 20 18 24 24 H 1.48503 * 109.47171 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47177 * 300.00419 * 22 20 18 26 26 H 1.09005 * 109.47018 * 270.02508 * 1 2 3 27 27 H 1.09009 * 109.47043 * 30.02079 * 1 2 3 28 28 H 1.08995 * 109.47219 * 150.02340 * 1 2 3 29 29 H 1.09004 * 109.47368 * 89.97687 * 5 4 3 30 30 H 1.09000 * 109.47165 * 209.97875 * 5 4 3 31 31 H 1.09000 * 109.47439 * 329.98138 * 5 4 3 32 32 H 1.08004 * 126.12756 * 180.23610 * 6 4 3 33 33 H 1.08998 * 109.47321 * 180.02562 * 10 8 7 34 34 H 1.09008 * 109.47186 * 299.99937 * 10 8 7 35 35 H 1.09003 * 109.47324 * 59.99878 * 10 8 7 36 36 H 1.00899 * 110.99952 * 31.05015 * 11 8 7 37 37 H 1.08997 * 109.46998 * 60.00442 * 12 11 8 38 38 H 1.08997 * 109.46873 * 300.00074 * 12 11 8 39 39 H 1.08998 * 109.47192 * 294.99969 * 17 13 12 40 40 H 1.09000 * 109.47325 * 55.00085 * 17 13 12 41 41 H 0.97004 * 119.99924 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5008 0.0003 6 6 3.6142 -0.7153 0.0062 7 6 2.3271 -1.1330 0.0005 8 6 1.8599 -2.5658 0.0011 9 1 0.9470 -2.6499 0.5905 10 6 1.5823 -3.0122 -1.4358 11 7 2.9014 -3.4202 0.5866 12 6 2.3215 -4.6481 1.1472 13 6 3.4342 -5.5100 1.7470 14 1 4.1975 -5.6955 0.9914 15 6 4.0370 -4.8065 2.8910 16 7 4.5033 -4.2647 3.7729 17 6 2.8489 -6.8426 2.2186 18 6 3.9621 -7.7391 2.6963 19 1 4.9847 -7.3928 2.6669 20 6 3.6749 -9.0011 3.1718 21 7 2.4297 -9.4225 3.2081 22 14 5.0548 -10.1126 3.7633 23 1 5.7689 -9.4589 4.8893 24 1 4.4867 -11.4061 4.2212 25 1 6.0058 -10.3568 2.6492 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 5.0824 1.7168 1.0279 30 1 5.6096 0.9977 -0.5127 31 1 4.5566 2.4328 -0.5145 32 1 4.4891 -1.3485 0.0117 33 1 1.2439 -4.0484 -1.4354 34 1 0.8094 -2.3782 -1.8704 35 1 2.4953 -2.9280 -2.0253 36 1 3.4303 -2.9188 1.2845 37 1 1.8161 -5.2044 0.3578 38 1 1.6038 -4.3885 1.9254 39 1 2.1504 -6.6637 3.0359 40 1 2.3254 -7.3225 1.3917 41 1 2.2277 -10.3105 3.5423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572143440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:55 Heat of formation + Delta-G solvation = 86.252983 kcal Electronic energy + Delta-G solvation = -20723.934503 eV Core-core repulsion = 17640.067784 eV Total energy + Delta-G solvation = -3083.866718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41160 -37.67649 -35.84622 -34.15376 -33.60312 -32.16424 -30.18581 -29.85171 -28.65708 -26.34843 -25.56548 -23.21963 -22.15361 -21.78691 -20.07999 -19.49707 -17.12121 -16.65333 -16.37437 -15.72645 -15.52780 -14.84461 -14.59848 -14.05811 -13.93140 -13.61944 -13.39149 -13.20014 -12.95355 -12.72750 -12.61076 -12.36138 -12.23966 -12.13062 -11.98072 -11.82598 -11.67230 -11.31022 -11.11128 -10.88170 -10.70721 -10.63636 -10.45522 -10.24459 -9.53298 -9.30419 -9.23521 -8.45704 -8.43773 -8.27228 -6.08855 -4.12001 1.79110 2.38918 2.63850 3.31437 3.35705 3.39169 3.58029 3.63102 4.22050 4.34329 4.43449 4.77789 4.81502 4.85936 4.91534 5.02228 5.15206 5.19176 5.29086 5.41925 5.44457 5.50296 5.63966 5.69542 5.76376 5.79909 5.88976 5.95899 6.08148 6.17354 6.37396 6.42344 6.55031 6.58652 6.90991 7.19764 7.44285 7.47879 7.54732 7.63804 7.85991 8.23986 8.40688 8.92315 9.53304 11.01983 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.003439 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.812196 B = 8140.356342 C = 8706.623068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.080 3.920 3 N -0.302 5.302 4 N -0.380 5.380 5 C 0.104 3.896 6 C 0.071 3.929 7 C -0.237 4.237 8 C 0.163 3.837 9 H 0.051 0.949 10 C -0.132 4.132 11 N -0.687 5.687 12 C 0.067 3.933 13 C 0.007 3.993 14 H 0.111 0.889 15 C 0.242 3.758 16 N -0.478 5.478 17 C 0.033 3.967 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.178 0.822 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.337 0.663 37 H 0.093 0.907 38 H 0.035 0.965 39 H 0.024 0.976 40 H 0.040 0.960 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 17.773 -10.677 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 N -0.125 5.125 4 N -0.162 5.162 5 C -0.038 4.038 6 C -0.075 4.075 7 C -0.249 4.249 8 C 0.052 3.948 9 H 0.069 0.931 10 C -0.190 4.190 11 N -0.319 5.319 12 C -0.063 4.063 13 C -0.015 4.015 14 H 0.129 0.871 15 C -0.075 4.075 16 N -0.156 5.156 17 C -0.006 4.006 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.195 0.805 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.155 0.845 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.784 19.524 -9.903 21.905 hybrid contribution 0.385 -1.468 0.958 1.795 sum -0.399 18.055 -8.944 20.153 Atomic orbital electron populations 1.20201 0.86794 1.03289 1.03001 1.22204 0.96813 0.90203 0.99417 1.77262 0.86507 1.22761 1.26004 1.48327 1.05417 1.04873 1.57546 1.21828 0.83732 0.94903 1.03323 1.22356 0.99657 0.84425 1.01018 1.20037 0.92005 0.95812 1.17018 1.19710 0.92960 0.85882 0.96252 0.93128 1.21757 1.01356 1.00817 0.95068 1.60708 1.25341 1.07360 1.38481 1.22133 0.95552 0.90415 0.98189 1.19339 0.97105 0.95419 0.89669 0.87143 1.29320 0.92431 0.91564 0.94153 1.80999 1.10508 1.12504 1.11540 1.19155 0.96563 0.87352 0.97520 1.21114 0.93306 0.99301 1.42805 0.92588 1.24948 0.95484 0.98007 0.95495 1.69926 1.17706 1.19034 1.46352 0.86661 0.82297 0.79820 0.79339 1.20298 1.21197 1.20014 0.90577 0.91020 0.90217 0.90881 0.89415 0.89483 0.80532 0.92197 0.92970 0.92164 0.84467 0.88911 0.94666 0.95774 0.94165 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.21 36.00 0.37 -0.31 16 2 C 0.08 0.99 7.22 -82.40 -0.59 0.40 16 3 N -0.30 -4.04 12.58 33.67 0.42 -3.62 16 4 N -0.38 -4.36 4.01 -68.16 -0.27 -4.63 16 5 C 0.10 0.74 11.47 59.84 0.69 1.42 16 6 C 0.07 0.82 10.39 -17.23 -0.18 0.65 16 7 C -0.24 -2.88 5.07 -105.05 -0.53 -3.41 16 8 C 0.16 1.90 2.72 -68.87 -0.19 1.71 16 9 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 10 C -0.13 -1.39 9.40 37.16 0.35 -1.04 16 11 N -0.69 -8.93 6.01 -107.95 -0.65 -9.58 16 12 C 0.07 0.98 4.92 -3.82 -0.02 0.96 16 13 C 0.01 0.12 2.42 -93.40 -0.23 -0.11 16 14 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 15 C 0.24 4.85 12.97 -20.78 -0.27 4.58 16 16 N -0.48 -10.39 18.53 42.12 0.78 -9.61 16 17 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 18 C -0.53 -13.96 8.60 -34.44 -0.30 -14.25 16 19 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 22 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.18 1.75 7.86 -52.48 -0.41 1.34 16 33 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 34 H 0.05 0.49 7.88 -51.92 -0.41 0.08 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.34 4.66 6.73 -39.29 -0.26 4.39 16 37 H 0.09 1.25 7.44 -51.93 -0.39 0.87 16 38 H 0.04 0.53 8.05 -51.93 -0.42 0.11 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -31.83 350.59 -6.26 -38.09 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.42 Total: -0.29 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.12 Total: -7.15 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 1.02 Total: -52.15 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.83 -6.26 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572143440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.343 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds