Wall clock time and date at job start Mon Mar 30 2020 01:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30842 * 125.89951 * 2 1 4 4 N 1.40087 * 108.20565 * 179.97438 * 3 2 1 5 5 C 1.46496 * 126.03681 * 179.97438 * 4 3 2 6 6 C 1.34940 * 107.92462 * 359.76454 * 4 3 2 7 7 C 1.35319 * 107.74918 * 0.38219 * 6 4 3 8 8 C 1.50702 * 126.04298 * 179.87266 * 7 6 4 9 9 H 1.08993 * 109.46899 * 144.69320 * 8 7 6 10 10 C 1.52998 * 109.47212 * 264.69472 * 8 7 6 11 11 N 1.46893 * 109.46880 * 24.69162 * 8 7 6 12 12 C 1.46910 * 110.99761 * 154.99791 * 11 8 7 13 13 C 1.53002 * 109.46906 * 180.02562 * 12 11 8 14 14 H 1.08996 * 109.47407 * 304.99784 * 13 12 11 15 15 C 1.47206 * 109.47021 * 65.00197 * 13 12 11 16 16 N 6.43429 * 117.75389 * 138.50108 * 2 1 3 17 17 C 1.52997 * 109.46817 * 185.00004 * 13 12 11 18 18 C 1.50698 * 109.46933 * 175.00167 * 17 13 12 19 19 H 1.08003 * 120.00121 * 0.02562 * 18 17 13 20 20 C 1.37882 * 119.99840 * 179.97438 * 18 17 13 21 21 N 1.31510 * 120.00071 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47013 * 60.00187 * 22 20 18 24 24 H 1.48503 * 109.47171 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47177 * 300.00419 * 22 20 18 26 26 H 1.09005 * 109.47018 * 270.02508 * 1 2 3 27 27 H 1.09009 * 109.47043 * 30.02079 * 1 2 3 28 28 H 1.08995 * 109.47219 * 150.02340 * 1 2 3 29 29 H 1.09004 * 109.47368 * 89.97687 * 5 4 3 30 30 H 1.09000 * 109.47165 * 209.97875 * 5 4 3 31 31 H 1.09000 * 109.47439 * 329.98138 * 5 4 3 32 32 H 1.08004 * 126.12756 * 180.23610 * 6 4 3 33 33 H 1.08998 * 109.47321 * 180.02562 * 10 8 7 34 34 H 1.09008 * 109.47186 * 299.99937 * 10 8 7 35 35 H 1.09003 * 109.47324 * 59.99878 * 10 8 7 36 36 H 1.00899 * 110.99952 * 31.05015 * 11 8 7 37 37 H 1.08997 * 109.46998 * 60.00442 * 12 11 8 38 38 H 1.08997 * 109.46873 * 300.00074 * 12 11 8 39 39 H 1.08998 * 109.47192 * 294.99969 * 17 13 12 40 40 H 1.09000 * 109.47325 * 55.00085 * 17 13 12 41 41 H 0.97004 * 119.99924 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5008 0.0003 6 6 3.6142 -0.7153 0.0062 7 6 2.3271 -1.1330 0.0005 8 6 1.8599 -2.5658 0.0011 9 1 0.9470 -2.6499 0.5905 10 6 1.5823 -3.0122 -1.4358 11 7 2.9014 -3.4202 0.5866 12 6 2.3215 -4.6481 1.1472 13 6 3.4342 -5.5100 1.7470 14 1 4.1975 -5.6955 0.9914 15 6 4.0370 -4.8065 2.8910 16 7 4.5033 -4.2647 3.7729 17 6 2.8489 -6.8426 2.2186 18 6 3.9621 -7.7391 2.6963 19 1 4.9847 -7.3928 2.6669 20 6 3.6749 -9.0011 3.1718 21 7 2.4297 -9.4225 3.2081 22 14 5.0548 -10.1126 3.7633 23 1 5.7689 -9.4589 4.8893 24 1 4.4867 -11.4061 4.2212 25 1 6.0058 -10.3568 2.6492 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8899 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 5.0824 1.7168 1.0279 30 1 5.6096 0.9977 -0.5127 31 1 4.5566 2.4328 -0.5145 32 1 4.4891 -1.3485 0.0117 33 1 1.2439 -4.0484 -1.4354 34 1 0.8094 -2.3782 -1.8704 35 1 2.4953 -2.9280 -2.0253 36 1 3.4303 -2.9188 1.2845 37 1 1.8161 -5.2044 0.3578 38 1 1.6038 -4.3885 1.9254 39 1 2.1504 -6.6637 3.0359 40 1 2.3254 -7.3225 1.3917 41 1 2.2277 -10.3105 3.5423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572143440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:54 Heat of formation + Delta-G solvation = 66.449991 kcal Electronic energy + Delta-G solvation = -20724.793225 eV Core-core repulsion = 17640.067784 eV Total energy + Delta-G solvation = -3084.725441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.26299 -38.99958 -37.15831 -35.61428 -34.81700 -33.74952 -31.31701 -30.71460 -29.53779 -27.96593 -26.37747 -24.58812 -23.52288 -23.08302 -20.98980 -20.37324 -18.54729 -18.21714 -17.76127 -16.61829 -16.60865 -16.41980 -15.79755 -15.19359 -14.84241 -14.67100 -14.53303 -14.32722 -14.28942 -13.89332 -13.86342 -13.48417 -13.41491 -13.13522 -13.05993 -12.97521 -12.83507 -12.71424 -12.59751 -12.44325 -12.31735 -11.99128 -11.82200 -11.53011 -11.30520 -11.07194 -10.52514 -10.16660 -9.41657 -9.22018 -8.17123 -6.25140 0.93189 1.42780 1.43925 1.51053 1.67015 1.75655 1.97472 1.99101 2.43285 3.18064 3.19015 3.28882 3.59887 3.97073 4.11174 4.22590 4.26036 4.40189 4.44349 4.48220 4.57868 4.65586 4.68664 4.75698 4.81277 4.93379 4.96926 4.99572 5.03018 5.12157 5.21210 5.26864 5.50604 5.54162 5.66809 5.73987 5.82295 6.12071 6.14334 6.25429 6.38960 6.76562 6.78163 6.90070 7.43227 8.93554 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.003439 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.812196 B = 8140.356342 C = 8706.623068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.070 3.930 3 N -0.335 5.335 4 N -0.384 5.384 5 C 0.094 3.906 6 C 0.067 3.933 7 C -0.252 4.252 8 C 0.166 3.834 9 H 0.051 0.949 10 C -0.127 4.127 11 N -0.682 5.682 12 C 0.078 3.922 13 C 0.020 3.980 14 H 0.126 0.874 15 C 0.252 3.748 16 N -0.508 5.508 17 C 0.038 3.962 18 C -0.540 4.540 19 H 0.054 0.946 20 C 0.012 3.988 21 N -0.923 5.923 22 Si 0.947 3.053 23 H -0.282 1.282 24 H -0.283 1.283 25 H -0.262 1.262 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.191 0.809 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.333 0.667 37 H 0.108 0.892 38 H 0.031 0.969 39 H -0.001 1.001 40 H 0.038 0.962 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 18.042 -11.637 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 N -0.158 5.158 4 N -0.165 5.165 5 C -0.046 4.046 6 C -0.080 4.080 7 C -0.264 4.264 8 C 0.056 3.944 9 H 0.069 0.931 10 C -0.185 4.185 11 N -0.313 5.313 12 C -0.052 4.052 13 C -0.002 4.002 14 H 0.143 0.857 15 C -0.064 4.064 16 N -0.185 5.185 17 C 0.000 4.000 18 C -0.578 4.578 19 H 0.073 0.927 20 C -0.187 4.187 21 N -0.563 5.563 22 Si 0.773 3.227 23 H -0.207 1.207 24 H -0.208 1.208 25 H -0.187 1.187 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.208 0.792 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.126 0.874 38 H 0.049 0.951 39 H 0.017 0.983 40 H 0.056 0.944 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.203 19.814 -10.877 22.604 hybrid contribution 0.232 -1.502 1.258 1.973 sum 0.029 18.312 -9.619 20.685 Atomic orbital electron populations 1.20299 0.85148 1.04261 1.03536 1.22659 0.98085 0.90004 0.98915 1.77205 0.87624 1.23744 1.27261 1.48673 1.05722 1.05327 1.56804 1.22145 0.83092 0.95067 1.04252 1.22642 1.00051 0.84808 1.00450 1.20157 0.92397 0.95919 1.17918 1.19715 0.92375 0.85541 0.96755 0.93091 1.21719 1.01486 1.01156 0.94126 1.60711 1.25635 1.07027 1.37886 1.21985 0.93995 0.90811 0.98415 1.19245 0.98214 0.93592 0.89167 0.85665 1.29680 0.91687 0.90988 0.94002 1.81001 1.11655 1.13588 1.12293 1.18982 0.95256 0.89310 0.96490 1.21546 0.94149 0.99875 1.42199 0.92748 1.25704 0.97462 0.99618 0.95962 1.70023 1.19310 1.19461 1.47524 0.85771 0.79892 0.78131 0.78913 1.20745 1.20822 1.18710 0.90179 0.90410 0.88890 0.90222 0.87032 0.88837 0.79197 0.91959 0.91811 0.92680 0.84967 0.87353 0.95107 0.98267 0.94376 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.21 71.24 0.73 -0.53 16 2 C 0.07 1.64 7.22 43.10 0.31 1.95 16 3 N -0.33 -8.71 12.58 -47.38 -0.60 -9.30 16 4 N -0.38 -8.37 4.01 -369.57 -1.48 -9.85 16 5 C 0.09 1.21 11.47 127.77 1.47 2.67 16 6 C 0.07 1.46 10.39 83.54 0.87 2.33 16 7 C -0.25 -5.80 5.07 -20.14 -0.10 -5.90 16 8 C 0.17 3.59 2.72 44.17 0.12 3.71 16 9 H 0.05 1.11 7.75 -2.39 -0.02 1.09 16 10 C -0.13 -2.40 9.40 71.98 0.68 -1.72 16 11 N -0.68 -16.47 6.01 -495.45 -2.98 -19.45 16 12 C 0.08 2.14 4.92 86.30 0.42 2.56 16 13 C 0.02 0.68 2.42 -12.60 -0.03 0.65 16 14 H 0.13 4.05 8.14 -2.39 -0.02 4.03 16 15 C 0.25 9.90 12.97 89.45 1.16 11.06 16 16 N -0.51 -21.74 18.53 20.00 0.37 -21.36 16 17 C 0.04 1.74 4.42 29.85 0.13 1.88 16 18 C -0.54 -28.29 8.60 25.60 0.22 -28.07 16 19 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 20 C 0.01 0.63 5.46 84.66 0.46 1.09 16 21 N -0.92 -52.76 13.29 21.45 0.28 -52.47 16 22 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 26 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.08 1.20 8.14 -2.38 -0.02 1.19 16 28 H 0.09 1.29 7.70 -2.39 -0.02 1.27 16 29 H 0.08 0.91 8.14 -2.38 -0.02 0.90 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.19 3.45 7.86 -2.91 -0.02 3.43 16 33 H 0.06 1.14 7.45 -2.39 -0.02 1.13 16 34 H 0.06 1.05 7.88 -2.38 -0.02 1.04 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.33 8.67 6.73 -89.69 -0.60 8.07 16 37 H 0.11 2.68 7.44 -2.39 -0.02 2.66 16 38 H 0.03 0.88 8.05 -2.39 -0.02 0.86 16 39 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 41 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -66.94 350.59 4.48 -62.46 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.42 Total: 13.14 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 6.44 Total: -8.32 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -4.40 Total: -112.44 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -66.94 4.48 -62.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572143440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.909 kcal (2) G-P(sol) polarization free energy of solvation -66.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds