Wall clock time and date at job start Mon Mar 30 2020 02:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36879 * 126.40033 * 265.02702 * 3 2 1 5 5 C 1.34675 * 106.81988 * 180.02562 * 4 3 2 6 6 N 1.34132 * 108.01601 * 359.97438 * 5 4 3 7 7 C 1.30493 * 109.26007 * 359.73026 * 6 5 4 8 8 C 1.50696 * 125.65484 * 180.29184 * 7 6 5 9 9 H 1.08997 * 109.47853 * 195.17459 * 8 7 6 10 10 C 1.52995 * 109.47249 * 75.16984 * 8 7 6 11 11 N 1.46906 * 109.46721 * 315.17744 * 8 7 6 12 12 C 1.46898 * 110.99559 * 204.99916 * 11 8 7 13 13 C 1.53006 * 109.47052 * 179.97438 * 12 11 8 14 14 H 1.08999 * 109.46758 * 304.99631 * 13 12 11 15 15 C 1.47196 * 109.47036 * 64.99691 * 13 12 11 16 16 N 7.93766 * 106.57669 * 55.73005 * 2 1 3 17 17 C 1.52998 * 109.47093 * 184.99969 * 13 12 11 18 18 C 1.50698 * 109.46873 * 175.00069 * 17 13 12 19 19 H 1.08002 * 120.00558 * 359.97438 * 18 17 13 20 20 C 1.37878 * 119.99942 * 179.97438 * 18 17 13 21 21 N 1.31516 * 119.99990 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47309 * 89.99995 * 22 20 18 24 24 H 1.48499 * 109.47266 * 210.00308 * 22 20 18 25 25 H 1.48500 * 109.47210 * 330.00030 * 22 20 18 26 26 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 31 31 H 1.07997 * 126.59311 * 359.96512 * 4 3 2 32 32 H 1.08002 * 125.99055 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47669 * 179.97438 * 10 8 7 34 34 H 1.09003 * 109.47460 * 300.00739 * 10 8 7 35 35 H 1.09009 * 109.47141 * 60.00478 * 10 8 7 36 36 H 1.00899 * 110.99795 * 328.94996 * 11 8 7 37 37 H 1.08996 * 109.47415 * 299.99561 * 12 11 8 38 38 H 1.09000 * 109.47877 * 59.99497 * 12 11 8 39 39 H 1.09010 * 109.47284 * 294.99707 * 17 13 12 40 40 H 1.08996 * 109.47488 * 55.00074 * 17 13 12 41 41 H 0.97006 * 120.00002 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3790 2.1152 -1.0976 5 6 2.7656 3.3244 -0.6479 6 7 2.6436 3.3287 0.6879 7 6 2.1907 2.1702 1.0825 8 6 1.9105 1.7765 2.5098 9 1 1.8039 0.6936 2.5739 10 6 0.6167 2.4450 2.9787 11 7 3.0235 2.2104 3.3649 12 6 3.1098 1.3839 4.5763 13 6 4.2782 1.8644 5.4393 14 1 5.1927 1.8629 4.8462 15 6 4.0060 3.2296 5.9178 16 7 3.7946 4.2839 6.2870 17 6 4.4461 0.9280 6.6376 18 6 5.6704 1.3279 7.4200 19 1 6.2692 2.1658 7.0949 20 6 6.0261 0.6240 8.5509 21 7 5.2973 -0.3967 8.9466 22 14 7.5442 1.1192 9.5203 23 1 7.1666 2.1116 10.5585 24 1 8.1288 -0.0805 10.1716 25 1 8.5440 1.7202 8.6015 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.3587 1.7874 -2.1264 32 1 3.1122 4.1467 -1.2562 33 1 0.4138 2.1599 4.0110 34 1 0.7233 3.5279 2.9147 35 1 -0.2092 2.1231 2.3443 36 1 3.8953 2.1995 2.8569 37 1 2.1815 1.4690 5.1411 38 1 3.2700 0.3430 4.2955 39 1 3.5669 0.9967 7.2784 40 1 4.5592 -0.0970 6.2847 41 1 5.5474 -0.8917 9.7425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581721918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:30 Heat of formation + Delta-G solvation = 74.672685 kcal Electronic energy + Delta-G solvation = -20875.723307 eV Core-core repulsion = 17791.354429 eV Total energy + Delta-G solvation = -3084.368878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.26671 -37.58307 -35.62390 -35.22437 -33.66505 -32.22369 -30.38132 -29.91953 -28.57218 -26.35997 -24.20706 -23.59397 -22.28188 -21.73563 -21.18837 -19.38806 -17.63859 -16.82919 -16.41201 -15.64530 -15.51649 -15.17019 -14.60071 -14.36200 -14.16412 -13.84291 -13.77085 -13.32185 -12.96466 -12.83517 -12.46691 -12.37380 -12.19576 -12.09397 -11.90800 -11.73775 -11.69390 -11.22284 -11.08521 -10.99100 -10.66138 -10.50737 -10.19769 -9.92937 -9.74008 -9.53136 -9.22027 -8.50215 -8.44557 -8.29855 -6.08512 -4.11199 1.88443 2.53564 3.10169 3.31525 3.37956 3.41775 3.81545 3.91877 4.15140 4.22083 4.26500 4.43310 4.52647 4.64295 4.79703 4.94874 4.97950 5.12912 5.21581 5.24007 5.29962 5.36748 5.53522 5.57858 5.61516 5.72816 5.74988 5.84945 6.01685 6.15060 6.32628 6.41212 6.51503 6.66242 6.96256 7.14097 7.42724 7.49251 7.54873 7.87341 8.09075 8.24930 8.67227 8.93758 9.54280 11.02423 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.003475 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.937115 B = 8056.667892 C = 8345.091669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.455 5.455 4 C -0.062 4.062 5 C -0.030 4.030 6 N -0.465 5.465 7 C 0.204 3.796 8 C 0.177 3.823 9 H 0.055 0.945 10 C -0.134 4.134 11 N -0.673 5.673 12 C 0.065 3.935 13 C 0.011 3.989 14 H 0.099 0.901 15 C 0.254 3.746 16 N -0.476 5.476 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.348 0.652 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.027 0.973 40 H 0.037 0.963 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 -3.770 -21.384 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.139 5.139 4 C -0.194 4.194 5 C -0.179 4.179 6 N -0.183 5.183 7 C -0.059 4.059 8 C 0.065 3.935 9 H 0.072 0.928 10 C -0.193 4.193 11 N -0.306 5.306 12 C -0.065 4.065 13 C -0.011 4.011 14 H 0.117 0.883 15 C -0.063 4.063 16 N -0.153 5.153 17 C -0.007 4.007 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.188 0.812 32 H 0.185 0.815 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.168 0.832 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.055 0.945 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.255 -1.311 -19.888 22.415 hybrid contribution 1.139 -1.741 -0.624 2.172 sum -9.116 -3.052 -20.512 22.653 Atomic orbital electron populations 1.22190 0.93933 1.03314 1.03417 1.21876 0.95846 0.80181 1.04675 1.45534 1.48962 1.12458 1.06956 1.22660 1.09830 0.94400 0.92546 1.22372 1.06678 0.97301 0.91557 1.70319 1.17332 1.19205 1.11402 1.23300 1.04118 0.87648 0.90816 1.19747 0.93937 0.96800 0.82975 0.92776 1.21783 0.93923 1.02594 1.01011 1.60498 1.07020 1.55712 1.07370 1.22186 0.99530 0.94374 0.90393 1.19175 0.97616 0.85429 0.98848 0.88346 1.28809 0.91940 0.94074 0.91440 1.81019 1.10016 1.13117 1.11134 1.19167 0.98086 0.93414 0.89998 1.21157 1.10171 1.14978 1.10025 0.92445 1.24947 0.96913 0.94850 0.97246 1.69939 1.38816 1.19661 1.24737 0.86593 0.83145 0.78022 0.80334 1.20614 1.21148 1.19723 0.91451 0.91883 0.90400 0.88894 0.88930 0.81156 0.81489 0.91504 0.90924 0.93101 0.83237 0.90220 0.93399 0.95498 0.94522 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.24 37.16 0.38 -0.54 16 2 C 0.10 0.60 6.53 -4.04 -0.03 0.57 16 3 N -0.46 -4.41 2.75 -113.90 -0.31 -4.72 16 4 C -0.06 -0.58 11.58 -16.56 -0.19 -0.77 16 5 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 6 N -0.46 -6.79 11.23 -10.81 -0.12 -6.91 16 7 C 0.20 2.53 6.40 -155.41 -0.99 1.54 16 8 C 0.18 2.10 2.98 -68.87 -0.21 1.90 16 9 H 0.05 0.54 6.52 -51.93 -0.34 0.21 16 10 C -0.13 -1.59 9.40 37.16 0.35 -1.24 16 11 N -0.67 -9.51 5.99 -107.95 -0.65 -10.16 16 12 C 0.06 0.95 4.85 -3.82 -0.02 0.93 16 13 C 0.01 0.21 2.35 -93.41 -0.22 -0.01 16 14 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 15 C 0.25 5.48 13.67 -20.73 -0.28 5.20 16 16 N -0.48 -11.22 18.54 42.19 0.78 -10.43 16 17 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 18 C -0.53 -14.05 8.60 -34.44 -0.30 -14.35 16 19 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 22 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.07 0.44 7.29 -51.93 -0.38 0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.54 7.14 -51.93 -0.37 0.17 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.07 0.78 7.45 -51.93 -0.39 0.39 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.50 7.29 -51.92 -0.38 0.12 16 36 H 0.35 4.95 8.35 -39.29 -0.33 4.63 16 37 H 0.08 1.18 7.43 -51.93 -0.39 0.80 16 38 H 0.05 0.62 8.06 -51.93 -0.42 0.20 16 39 H 0.03 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -33.01 349.54 -7.58 -40.59 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.32 Total: -0.18 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.94 Total: -5.09 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.44 Total: -57.00 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.01 -7.58 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581721918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.266 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds