Wall clock time and date at job start Mon Mar 30 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47296 * 2 1 4 4 C 1.50700 * 109.47194 * 239.99588 * 2 1 3 5 5 H 1.07999 * 120.00450 * 240.00197 * 4 2 1 6 6 C 1.37879 * 119.99476 * 60.27721 * 4 2 1 7 7 N 1.31509 * 120.00287 * 359.72153 * 6 4 2 8 8 Si 1.86809 * 119.99815 * 179.72577 * 6 4 2 9 9 H 1.48497 * 109.47062 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47196 * 120.00173 * 8 6 4 11 11 H 1.48495 * 109.46822 * 239.99999 * 8 6 4 12 12 N 1.46902 * 109.46927 * 120.00192 * 2 1 3 13 13 C 1.46899 * 111.00252 * 58.95314 * 12 2 1 14 14 C 1.38583 * 110.99694 * 294.99557 * 12 2 1 15 15 N 1.31211 * 126.46987 * 66.57826 * 14 12 2 16 16 N 1.28536 * 109.85879 * 179.81917 * 15 14 12 17 17 C 1.30292 * 110.04809 * 0.45340 * 16 15 14 18 18 C 1.50707 * 126.34213 * 179.69247 * 17 16 15 19 19 C 1.52995 * 117.49832 * 8.66282 * 18 17 16 20 20 C 1.52994 * 117.49960 * 300.04097 * 18 17 16 21 21 N 1.36452 * 126.47363 * 246.88575 * 14 12 2 22 22 C 1.46502 * 127.13495 * 0.02562 * 21 14 12 23 23 C 1.52998 * 117.49994 * 14.75701 * 22 21 14 24 24 C 1.52993 * 60.00328 * 252.50914 * 23 22 21 25 25 H 1.09004 * 109.47018 * 300.00215 * 1 2 3 26 26 H 1.09003 * 109.47187 * 60.00076 * 1 2 3 27 27 H 1.08998 * 109.47296 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00291 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47417 * 54.06551 * 13 12 2 30 30 H 1.09002 * 109.46952 * 174.06562 * 13 12 2 31 31 H 1.08996 * 109.47076 * 294.06190 * 13 12 2 32 32 H 1.09005 * 115.54848 * 154.36717 * 18 17 16 33 33 H 1.09002 * 117.50322 * 0.02562 * 19 18 17 34 34 H 1.09006 * 117.50078 * 145.02298 * 19 18 17 35 35 H 1.09000 * 117.50159 * 214.98384 * 20 18 17 36 36 H 1.08997 * 117.49999 * 359.97438 * 20 18 17 37 37 H 1.09000 * 115.54866 * 160.47045 * 22 21 14 38 38 H 1.09001 * 117.50142 * 0.02562 * 23 22 21 39 39 H 1.09006 * 117.49504 * 145.01972 * 23 22 21 40 40 H 1.09001 * 117.50351 * 252.51076 * 24 23 22 41 41 H 1.09003 * 117.49527 * 107.48884 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.7039 -0.2361 -2.4827 7 7 0.9478 0.8331 -2.6034 8 14 2.3329 -1.1123 -4.0079 9 1 3.1573 -2.2794 -3.6037 10 1 1.1813 -1.5772 -4.8221 11 1 3.1607 -0.1764 -4.8104 12 7 2.0196 -0.6926 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6697 -0.0023 2.3490 15 7 0.4550 0.1777 2.8114 16 7 0.4987 0.8606 3.8995 17 6 1.7329 1.1626 4.1881 18 6 2.2026 1.9590 5.3781 19 6 1.1695 2.2956 6.4552 20 6 1.6835 3.3912 5.5192 21 7 2.5228 0.6236 3.2107 22 6 3.9821 0.7023 3.1093 23 6 4.6182 0.3301 1.7685 24 6 4.7523 -0.6120 2.9665 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7171 1.1671 -3.4844 29 1 1.7861 -2.5847 0.3171 30 1 1.9888 -2.5972 2.0854 31 1 0.4454 -2.0731 1.3702 32 1 3.2234 1.7592 5.7043 33 1 0.1501 1.9407 6.3034 34 1 1.5104 2.3172 7.4904 35 1 2.3625 4.1337 5.9384 36 1 1.0025 3.7576 4.7511 37 1 4.4510 1.5004 3.6849 38 1 3.9509 0.0271 0.9617 39 1 5.5058 0.8836 1.4617 40 1 5.7280 -0.6784 3.4479 41 1 4.1732 -1.5352 2.9480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584178575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:51 Heat of formation + Delta-G solvation = 157.502245 kcal Electronic energy + Delta-G solvation = -22417.584091 eV Core-core repulsion = 19336.806973 eV Total energy + Delta-G solvation = -3080.777119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.53221 -37.71191 -37.17001 -36.68545 -32.84020 -32.26597 -29.46884 -28.46426 -25.49673 -25.25574 -23.86174 -23.29944 -22.41808 -22.15209 -21.10326 -19.84847 -19.00629 -17.07293 -16.39767 -15.88862 -15.49268 -15.36470 -14.71054 -14.58836 -14.25527 -13.80874 -13.32270 -12.84950 -12.48274 -12.12785 -11.60218 -11.55955 -11.49765 -11.31337 -11.22697 -11.14190 -10.99016 -10.86033 -10.71454 -10.60960 -10.53849 -10.41134 -10.12124 -10.11187 -9.85117 -9.19518 -8.88314 -8.47183 -8.31019 -7.69718 -6.09021 -4.15920 2.09187 2.62165 3.24731 3.25503 3.33845 3.36925 3.84760 4.01384 4.29428 4.35215 4.53439 4.70891 4.78366 4.87437 4.95130 5.02759 5.08637 5.23282 5.57203 5.58491 5.64232 5.72377 5.86197 5.92044 6.04053 6.14081 6.17260 6.26845 6.35331 6.48577 6.60376 6.81464 6.84877 7.06688 7.09108 7.19402 7.53487 7.63894 7.74209 7.90741 8.24594 8.44229 8.87788 9.27451 9.49341 10.97593 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.005440 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.255099 B = 5145.900697 C = 5558.319509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.223 3.777 3 H 0.037 0.963 4 C -0.509 4.509 5 H 0.067 0.933 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.467 5.467 13 C 0.043 3.957 14 C 0.373 3.627 15 N -0.311 5.311 16 N -0.293 5.293 17 C 0.191 3.809 18 C -0.077 4.077 19 C -0.151 4.151 20 C -0.161 4.161 21 N -0.438 5.438 22 C 0.050 3.950 23 C -0.168 4.168 24 C -0.172 4.172 25 H 0.037 0.963 26 H 0.085 0.915 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.224 1.218 13.724 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.118 3.882 3 H 0.055 0.945 4 C -0.547 4.547 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.193 5.193 13 C -0.104 4.104 14 C 0.018 3.982 15 N -0.154 5.154 16 N -0.134 5.134 17 C -0.076 4.076 18 C -0.098 4.098 19 C -0.188 4.188 20 C -0.200 4.200 21 N -0.130 5.130 22 C -0.055 4.055 23 C -0.205 4.205 24 C -0.210 4.210 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.149 1.223 13.626 14.999 hybrid contribution 1.000 -0.270 -1.012 1.449 sum 7.149 0.953 12.614 14.530 Atomic orbital electron populations 1.22462 0.98858 1.00140 1.01917 1.19422 0.91537 0.93905 0.83310 0.94519 1.21032 1.31680 1.12846 0.89171 0.91504 1.24909 0.94964 0.95014 0.99023 1.69923 1.36307 1.22706 1.23576 0.86419 0.78583 0.79568 0.82706 1.19630 1.21035 1.21044 1.59562 1.58648 1.02683 0.98397 1.22264 0.98813 0.87264 1.02084 1.22883 0.84521 0.97529 0.93251 1.74755 1.18003 1.16822 1.05846 1.73900 1.16023 1.13685 1.09765 1.23452 0.87860 1.02669 0.93602 1.19950 0.99249 0.97000 0.93619 1.22982 0.99615 1.01698 0.94552 1.23057 1.03519 0.90396 1.02980 1.45671 1.07042 1.40803 1.19468 1.21839 0.76627 1.01147 1.05883 1.23925 1.02845 1.00726 0.93031 1.23306 1.00712 0.94049 1.02933 0.94446 0.89633 0.95000 0.92831 0.89090 0.93922 0.94058 0.86355 0.87267 0.88184 0.88124 0.88176 0.84783 0.82945 0.88249 0.88156 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 8.19 37.16 0.30 -4.17 16 2 C 0.22 5.55 1.84 -68.86 -0.13 5.42 16 3 H 0.04 1.03 8.11 -51.93 -0.42 0.61 16 4 C -0.51 -13.15 7.85 -34.44 -0.27 -13.42 16 5 H 0.07 1.69 6.78 -52.49 -0.36 1.33 16 6 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 7 N -0.89 -24.84 11.33 55.43 0.63 -24.21 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.47 -9.94 2.30 -176.09 -0.41 -10.34 16 13 C 0.04 0.86 8.70 60.06 0.52 1.38 16 14 C 0.37 7.90 6.02 -318.88 -1.92 5.98 16 15 N -0.31 -7.07 9.67 30.31 0.29 -6.78 16 16 N -0.29 -6.07 11.79 32.99 0.39 -5.68 16 17 C 0.19 3.33 7.59 -154.02 -1.17 2.16 16 18 C -0.08 -0.96 5.95 -91.77 -0.55 -1.51 16 19 C -0.15 -1.61 10.15 -26.74 -0.27 -1.88 16 20 C -0.16 -1.74 10.23 -26.74 -0.27 -2.01 16 21 N -0.44 -7.90 3.15 -107.01 -0.34 -8.23 16 22 C 0.05 0.71 6.73 -67.93 -0.46 0.26 16 23 C -0.17 -2.51 9.85 -26.74 -0.26 -2.77 16 24 C -0.17 -2.21 10.34 -26.73 -0.28 -2.48 16 25 H 0.04 0.96 5.80 -51.93 -0.30 0.66 16 26 H 0.09 2.39 6.08 -51.93 -0.32 2.07 16 27 H 0.03 0.78 6.52 -51.93 -0.34 0.45 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.09 1.80 6.36 -51.93 -0.33 1.47 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.86 6.49 -51.93 -0.34 0.52 16 32 H 0.12 1.18 8.06 -51.93 -0.42 0.76 16 33 H 0.11 1.36 7.92 -51.93 -0.41 0.95 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.13 1.50 7.96 -51.93 -0.41 1.09 16 38 H 0.15 2.92 5.22 -51.93 -0.27 2.65 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -30.20 328.46 -10.35 -40.55 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.01 Total: 5.68 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -4.84 Total: -11.46 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.57 Total: -55.25 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.20 -10.35 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584178575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.056 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds