Wall clock time and date at job start Mon Mar 30 2020 02:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47296 * 2 1 4 4 C 1.50700 * 109.47194 * 239.99588 * 2 1 3 5 5 H 1.07999 * 120.00450 * 240.00197 * 4 2 1 6 6 C 1.37879 * 119.99476 * 60.27721 * 4 2 1 7 7 N 1.31509 * 120.00287 * 359.72153 * 6 4 2 8 8 Si 1.86809 * 119.99815 * 179.72577 * 6 4 2 9 9 H 1.48497 * 109.47062 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47196 * 120.00173 * 8 6 4 11 11 H 1.48495 * 109.46822 * 239.99999 * 8 6 4 12 12 N 1.46902 * 109.46927 * 120.00192 * 2 1 3 13 13 C 1.46899 * 111.00252 * 58.95314 * 12 2 1 14 14 C 1.38583 * 110.99694 * 294.99557 * 12 2 1 15 15 N 1.31211 * 126.46987 * 66.57826 * 14 12 2 16 16 N 1.28536 * 109.85879 * 179.81917 * 15 14 12 17 17 C 1.30292 * 110.04809 * 0.45340 * 16 15 14 18 18 C 1.50707 * 126.34213 * 179.69247 * 17 16 15 19 19 C 1.52995 * 117.49832 * 8.66282 * 18 17 16 20 20 C 1.52994 * 117.49960 * 300.04097 * 18 17 16 21 21 N 1.36452 * 126.47363 * 246.88575 * 14 12 2 22 22 C 1.46502 * 127.13495 * 0.02562 * 21 14 12 23 23 C 1.52998 * 117.49994 * 14.75701 * 22 21 14 24 24 C 1.52993 * 60.00328 * 252.50914 * 23 22 21 25 25 H 1.09004 * 109.47018 * 300.00215 * 1 2 3 26 26 H 1.09003 * 109.47187 * 60.00076 * 1 2 3 27 27 H 1.08998 * 109.47296 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00291 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47417 * 54.06551 * 13 12 2 30 30 H 1.09002 * 109.46952 * 174.06562 * 13 12 2 31 31 H 1.08996 * 109.47076 * 294.06190 * 13 12 2 32 32 H 1.09005 * 115.54848 * 154.36717 * 18 17 16 33 33 H 1.09002 * 117.50322 * 0.02562 * 19 18 17 34 34 H 1.09006 * 117.50078 * 145.02298 * 19 18 17 35 35 H 1.09000 * 117.50159 * 214.98384 * 20 18 17 36 36 H 1.08997 * 117.49999 * 359.97438 * 20 18 17 37 37 H 1.09000 * 115.54866 * 160.47045 * 22 21 14 38 38 H 1.09001 * 117.50142 * 0.02562 * 23 22 21 39 39 H 1.09006 * 117.49504 * 145.01972 * 23 22 21 40 40 H 1.09001 * 117.50351 * 252.51076 * 24 23 22 41 41 H 1.09003 * 117.49527 * 107.48884 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.7039 -0.2361 -2.4827 7 7 0.9478 0.8331 -2.6034 8 14 2.3329 -1.1123 -4.0079 9 1 3.1573 -2.2794 -3.6037 10 1 1.1813 -1.5772 -4.8221 11 1 3.1607 -0.1764 -4.8104 12 7 2.0196 -0.6926 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6697 -0.0023 2.3490 15 7 0.4550 0.1777 2.8114 16 7 0.4987 0.8606 3.8995 17 6 1.7329 1.1626 4.1881 18 6 2.2026 1.9590 5.3781 19 6 1.1695 2.2956 6.4552 20 6 1.6835 3.3912 5.5192 21 7 2.5228 0.6236 3.2107 22 6 3.9821 0.7023 3.1093 23 6 4.6182 0.3301 1.7685 24 6 4.7523 -0.6120 2.9665 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7171 1.1671 -3.4844 29 1 1.7861 -2.5847 0.3171 30 1 1.9888 -2.5972 2.0854 31 1 0.4454 -2.0731 1.3702 32 1 3.2234 1.7592 5.7043 33 1 0.1501 1.9407 6.3034 34 1 1.5104 2.3172 7.4904 35 1 2.3625 4.1337 5.9384 36 1 1.0025 3.7576 4.7511 37 1 4.4510 1.5004 3.6849 38 1 3.9509 0.0271 0.9617 39 1 5.5058 0.8836 1.4617 40 1 5.7280 -0.6784 3.4479 41 1 4.1732 -1.5352 2.9480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584178575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:50 Heat of formation + Delta-G solvation = 143.020058 kcal Electronic energy + Delta-G solvation = -22418.212086 eV Core-core repulsion = 19336.806973 eV Total energy + Delta-G solvation = -3081.405113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.01232 -39.25016 -38.35720 -37.87322 -34.82175 -33.64919 -31.23958 -30.19845 -27.33065 -27.14892 -25.14584 -24.60785 -23.28071 -23.22571 -22.85708 -21.06738 -20.61473 -18.40795 -18.23136 -17.50227 -17.01234 -16.67184 -16.36033 -15.76062 -15.54186 -15.31965 -14.96862 -14.42192 -14.07391 -13.43265 -13.30227 -13.04413 -13.01719 -12.78464 -12.75877 -12.65496 -12.42603 -12.33589 -12.26801 -12.13218 -12.02424 -11.82012 -11.68517 -11.44614 -11.30763 -10.92061 -10.54881 -10.43955 -9.80959 -9.43412 -8.14322 -6.28188 0.67724 1.28088 1.44408 1.46456 1.58204 1.75072 2.41513 2.80179 2.94762 3.00756 3.16553 3.24584 3.59343 3.76363 3.90889 3.97523 4.02115 4.09216 4.16473 4.40692 4.57657 4.63113 4.66329 4.77432 4.80363 4.85796 4.95298 4.98880 4.99936 5.07094 5.09360 5.18791 5.20170 5.31142 5.39606 5.52748 5.61126 5.64958 5.85110 6.01281 6.18916 6.61532 6.81984 7.41218 7.74828 8.92931 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.005440 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.255099 B = 5145.900697 C = 5558.319509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H -0.004 1.004 4 C -0.513 4.513 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.282 1.282 12 N -0.453 5.453 13 C 0.048 3.952 14 C 0.350 3.650 15 N -0.349 5.349 16 N -0.333 5.333 17 C 0.207 3.793 18 C -0.094 4.094 19 C -0.141 4.141 20 C -0.151 4.151 21 N -0.438 5.438 22 C 0.037 3.963 23 C -0.186 4.186 24 C -0.146 4.146 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.156 0.844 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.072 0.928 37 H 0.175 0.825 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.080 1.097 15.602 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.132 3.868 3 H 0.014 0.986 4 C -0.551 4.551 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.208 1.208 12 N -0.178 5.178 13 C -0.100 4.100 14 C -0.007 4.007 15 N -0.192 5.192 16 N -0.173 5.173 17 C -0.060 4.060 18 C -0.114 4.114 19 C -0.179 4.179 20 C -0.189 4.189 21 N -0.129 5.129 22 C -0.066 4.066 23 C -0.224 4.224 24 C -0.184 4.184 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.173 0.827 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.192 0.808 38 H 0.127 0.873 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.021 1.088 15.526 17.989 hybrid contribution 0.099 -0.168 -1.493 1.506 sum 9.119 0.920 14.033 16.761 Atomic orbital electron populations 1.22278 0.99764 0.99517 1.00177 1.19016 0.90471 0.92187 0.85132 0.98591 1.21261 1.31412 1.12853 0.89587 0.90847 1.25758 0.95061 0.95605 1.02127 1.70070 1.37595 1.24274 1.24206 0.85351 0.77956 0.78699 0.78688 1.18253 1.21097 1.20802 1.59486 1.58018 1.02824 0.97518 1.22257 0.97917 0.86795 1.02989 1.22866 0.85125 0.98922 0.93798 1.74601 1.19526 1.17985 1.07059 1.73810 1.18279 1.15291 1.09919 1.24489 0.86901 1.00642 0.93976 1.20385 1.01364 0.97389 0.92270 1.23071 0.97997 1.00722 0.96074 1.23124 1.03319 0.90303 1.02177 1.45916 1.08545 1.39780 1.18676 1.22434 0.74586 1.03535 1.05997 1.23797 1.03219 1.02872 0.92517 1.23362 1.01811 0.92259 1.00980 0.95190 0.92185 0.94915 0.92883 0.89213 0.91481 0.95718 0.82698 0.89815 0.84445 0.84382 0.90956 0.80812 0.87347 0.85787 0.83929 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.55 8.19 71.98 0.59 -7.96 16 2 C 0.24 12.41 1.84 44.17 0.08 12.49 16 3 H 0.00 -0.23 8.11 -2.39 -0.02 -0.25 16 4 C -0.51 -27.13 7.85 25.60 0.20 -26.93 16 5 H 0.07 3.72 6.78 -2.91 -0.02 3.70 16 6 C 0.01 0.73 5.31 84.66 0.45 1.18 16 7 N -0.92 -53.38 11.33 21.45 0.24 -53.14 16 8 Si 0.97 42.42 29.54 68.60 2.03 44.44 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 N -0.45 -19.90 2.30 -711.01 -1.64 -21.54 16 13 C 0.05 1.93 8.70 127.69 1.11 3.04 16 14 C 0.35 15.20 6.02 260.11 1.57 16.77 16 15 N -0.35 -16.52 9.67 -58.01 -0.56 -17.08 16 16 N -0.33 -14.17 11.79 -49.54 -0.58 -14.75 16 17 C 0.21 7.09 7.59 137.64 1.04 8.14 16 18 C -0.09 -2.03 5.95 -11.54 -0.07 -2.10 16 19 C -0.14 -2.62 10.15 30.59 0.31 -2.31 16 20 C -0.15 -2.83 10.23 30.59 0.31 -2.52 16 21 N -0.44 -15.53 3.15 -492.46 -1.55 -17.08 16 22 C 0.04 0.97 6.73 44.99 0.30 1.28 16 23 C -0.19 -5.30 9.85 30.59 0.30 -5.00 16 24 C -0.15 -3.32 10.34 30.59 0.32 -3.00 16 25 H 0.03 1.63 5.80 -2.38 -0.01 1.61 16 26 H 0.06 3.53 6.08 -2.39 -0.01 3.52 16 27 H 0.03 1.70 6.52 -2.39 -0.02 1.68 16 28 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.09 3.59 6.36 -2.39 -0.02 3.58 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.02 1.06 6.49 -2.39 -0.02 1.04 16 32 H 0.16 2.26 8.06 -2.38 -0.02 2.24 16 33 H 0.08 2.03 7.92 -2.39 -0.02 2.01 16 34 H 0.14 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.17 3.09 7.96 -2.39 -0.02 3.07 16 38 H 0.11 4.21 5.22 -2.39 -0.01 4.20 16 39 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 40 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -70.57 328.46 5.49 -65.08 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 1.03 Total: 21.00 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 6.52 Total: -6.93 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -4.09 Total: -123.59 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -70.57 5.49 -65.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584178575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.103 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds