Wall clock time and date at job start Mon Mar 30 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35326 * 126.12808 * 2 1 4 4 C 1.39868 * 107.91983 * 180.14625 * 3 2 1 5 5 C 1.50698 * 125.89520 * 179.86175 * 4 3 2 6 6 C 1.53006 * 109.47051 * 124.71454 * 5 4 3 7 7 H 1.09003 * 109.47079 * 305.00025 * 6 5 4 8 8 C 1.52998 * 109.47177 * 184.99862 * 6 5 4 9 9 N 1.46893 * 109.46741 * 64.99916 * 6 5 4 10 10 C 1.46910 * 110.99761 * 204.99871 * 9 6 5 11 11 C 1.53002 * 109.46906 * 180.02562 * 10 9 6 12 12 H 1.08996 * 109.47407 * 304.99784 * 11 10 9 13 13 C 1.47206 * 109.47021 * 65.00197 * 11 10 9 14 14 N 8.17677 * 164.09172 * 160.70897 * 2 1 3 15 15 C 1.52997 * 109.46817 * 185.00004 * 11 10 9 16 16 C 1.50698 * 109.46933 * 175.00167 * 15 11 10 17 17 H 1.08003 * 120.00121 * 0.02562 * 16 15 11 18 18 C 1.37882 * 119.99840 * 179.97438 * 16 15 11 19 19 N 1.31510 * 120.00071 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99922 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46815 * 89.99942 * 20 18 16 22 22 H 1.48498 * 109.46961 * 210.00195 * 20 18 16 23 23 H 1.48497 * 109.47305 * 330.00346 * 20 18 16 24 24 N 1.30831 * 108.20505 * 359.59811 * 4 3 2 25 25 N 1.34947 * 126.13271 * 179.70445 * 2 1 3 26 26 H 0.97008 * 126.03495 * 0.02562 * 25 2 1 27 27 H 1.09005 * 109.47239 * 270.26972 * 1 2 3 28 28 H 1.09001 * 109.47314 * 30.27195 * 1 2 3 29 29 H 1.09002 * 109.47012 * 150.26978 * 1 2 3 30 30 H 1.08003 * 126.03656 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47480 * 4.71434 * 5 4 3 32 32 H 1.08998 * 109.47343 * 244.71185 * 5 4 3 33 33 H 1.08998 * 109.47237 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.47595 * 300.00477 * 8 6 5 35 35 H 1.09008 * 109.46957 * 60.00122 * 8 6 5 36 36 H 1.00899 * 110.99952 * 81.05096 * 9 6 5 37 37 H 1.08997 * 109.46998 * 60.00442 * 10 9 6 38 38 H 1.08997 * 109.46873 * 300.00074 * 10 9 6 39 39 H 1.08998 * 109.47192 * 294.99969 * 15 11 10 40 40 H 1.09000 * 109.47325 * 55.00085 * 15 11 10 41 41 H 0.97004 * 119.99924 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 -0.0034 5 6 4.8542 1.5396 -0.0075 6 6 5.7523 1.1740 1.1760 7 1 5.1771 1.2318 2.1001 8 6 6.9278 2.1510 1.2450 9 7 6.2612 -0.1927 1.0006 10 6 6.6053 -0.7965 2.2950 11 6 7.1309 -2.2160 2.0719 12 1 6.3976 -2.7902 1.5057 13 6 8.3954 -2.1585 1.3205 14 7 9.3705 -2.1154 0.7404 15 6 7.3715 -2.8891 3.4246 16 6 7.7715 -4.3256 3.2068 17 1 7.8469 -4.7190 2.2038 18 6 8.0421 -5.1374 4.2879 19 7 7.9507 -4.6582 5.5092 20 14 8.5371 -6.9183 4.0180 21 1 10.0144 -7.0083 3.8961 22 1 8.0845 -7.7380 5.1705 23 1 7.9061 -7.4242 2.7726 24 7 3.6334 -0.6523 0.0034 25 7 2.3026 -1.0899 0.0056 26 1 2.0056 -2.0134 0.0100 27 1 -0.3634 0.0048 1.0277 28 1 -0.3634 0.8875 -0.5180 29 1 -0.3633 -0.8924 -0.5096 30 1 1.9740 2.1211 0.0004 31 1 4.5483 2.5824 0.0770 32 1 5.4033 1.3963 -0.9381 33 1 7.5679 1.8903 2.0879 34 1 7.5030 2.0933 0.3210 35 1 6.5501 3.1652 1.3752 36 1 7.0516 -0.2066 0.3737 37 1 5.7176 -0.8325 2.9265 38 1 7.3741 -0.1971 2.7825 39 1 8.1682 -2.3664 3.9539 40 1 6.4570 -2.8523 4.0166 41 1 8.1408 -5.2295 6.2698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591756562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:05 Heat of formation + Delta-G solvation = 75.346354 kcal Electronic energy + Delta-G solvation = -20770.412561 eV Core-core repulsion = 17686.072896 eV Total energy + Delta-G solvation = -3084.339665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09087 -37.86130 -36.03555 -33.90904 -32.95751 -32.07112 -31.17441 -29.57954 -27.25607 -26.79445 -26.10611 -22.85361 -21.82449 -21.14212 -20.37411 -19.46482 -17.22081 -16.60366 -16.46717 -15.37766 -15.13786 -14.82128 -14.49926 -13.97106 -13.78431 -13.65941 -13.20460 -13.08103 -12.92937 -12.73803 -12.59306 -12.45383 -12.09922 -12.01945 -11.90485 -11.63828 -11.32503 -11.15580 -10.96696 -10.88984 -10.66685 -10.47892 -10.22352 -10.16973 -9.46529 -9.18499 -9.08223 -8.49705 -8.41783 -8.01803 -6.05831 -4.08393 2.01711 2.90792 3.01811 3.31863 3.38128 3.42040 3.66595 3.72239 4.36124 4.46813 4.57890 4.77771 4.89892 4.92155 5.01864 5.24302 5.25107 5.28791 5.32147 5.50675 5.59750 5.65877 5.71047 5.74885 5.81907 5.84001 5.89091 6.04500 6.18347 6.21836 6.31603 6.51421 6.65865 6.78925 7.31878 7.41751 7.49610 7.59506 7.67228 7.89832 7.95681 8.28518 8.49400 8.96351 9.56590 11.05155 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.004102 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.586673 B = 6823.499756 C = 7876.966846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.073 3.927 3 C -0.276 4.276 4 C 0.079 3.921 5 C -0.028 4.028 6 C 0.089 3.911 7 H 0.079 0.921 8 C -0.184 4.184 9 N -0.670 5.670 10 C 0.074 3.926 11 C 0.008 3.992 12 H 0.111 0.889 13 C 0.245 3.755 14 N -0.481 5.481 15 C 0.033 3.967 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.273 1.273 24 N -0.234 5.234 25 N -0.483 5.483 26 H 0.435 0.565 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.335 0.665 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.023 0.977 40 H 0.038 0.962 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.124 14.286 -9.130 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 C -0.306 4.306 4 C -0.089 4.089 5 C -0.068 4.068 6 C -0.023 4.023 7 H 0.098 0.902 8 C -0.243 4.243 9 N -0.300 5.300 10 C -0.057 4.057 11 C -0.014 4.014 12 H 0.129 0.871 13 C -0.072 4.072 14 N -0.158 5.158 15 C -0.006 4.006 16 C -0.562 4.562 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.197 1.197 24 N -0.056 5.056 25 N -0.191 5.191 26 H 0.278 0.722 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.153 0.847 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.552 12.975 -9.840 21.185 hybrid contribution 0.088 -0.402 0.488 0.638 sum -13.463 12.573 -9.353 20.659 Atomic orbital electron populations 1.20413 0.87914 1.03490 1.03169 1.21035 0.94307 0.88215 1.02031 1.21110 0.92056 0.98684 1.18748 1.22075 0.94684 0.91980 1.00157 1.20063 0.91202 0.96106 0.99386 1.21483 0.94721 0.87878 0.98176 0.90231 1.22530 0.99310 1.00244 1.02234 1.60597 1.38821 1.17933 1.12698 1.22015 0.99670 0.93343 0.90622 1.19308 0.86988 0.96572 0.98535 0.87146 1.29318 0.94562 0.91426 0.91873 1.80990 1.12201 1.10388 1.12238 1.19146 0.98352 0.94988 0.88071 1.21167 1.46685 0.95512 0.92843 0.92544 1.24951 0.95281 0.98611 0.95144 1.69942 1.49075 1.36255 0.97873 0.86606 0.78902 0.84839 0.77814 1.20691 1.21118 1.19744 1.77772 0.93802 1.12252 1.21787 1.46604 1.04843 1.08050 1.59614 0.72200 0.90399 0.89983 0.91367 0.84288 0.90099 0.90410 0.92330 0.92470 0.92109 0.84653 0.89622 0.95171 0.95879 0.94396 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.43 36.00 0.38 -0.18 16 2 C 0.07 0.73 7.21 -82.27 -0.59 0.14 16 3 C -0.28 -3.02 10.64 -40.01 -0.43 -3.45 16 4 C 0.08 1.00 6.47 -82.41 -0.53 0.46 16 5 C -0.03 -0.29 5.47 -27.88 -0.15 -0.45 16 6 C 0.09 1.02 2.58 -67.71 -0.17 0.85 16 7 H 0.08 0.96 7.80 -51.93 -0.40 0.56 16 8 C -0.18 -1.88 9.16 37.16 0.34 -1.54 16 9 N -0.67 -9.48 5.25 -106.72 -0.56 -10.04 16 10 C 0.07 1.17 4.92 -3.82 -0.02 1.15 16 11 C 0.01 0.15 2.42 -93.40 -0.23 -0.07 16 12 H 0.11 2.16 8.14 -51.93 -0.42 1.73 16 13 C 0.24 5.17 12.97 -20.78 -0.27 4.90 16 14 N -0.48 -10.84 18.53 42.13 0.78 -10.06 16 15 C 0.03 0.80 4.42 -27.89 -0.12 0.67 16 16 C -0.52 -14.36 8.60 -34.44 -0.30 -14.65 16 17 H 0.06 1.55 7.59 -52.48 -0.40 1.15 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 N -0.23 -3.38 11.80 33.67 0.40 -2.98 16 25 N -0.48 -5.59 7.36 33.48 0.25 -5.35 16 26 H 0.43 4.00 8.96 -182.60 -1.64 2.36 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 34 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.34 4.94 7.55 -39.29 -0.30 4.64 16 37 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 38 H 0.03 0.48 7.43 -51.93 -0.39 0.09 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -32.38 350.43 -8.05 -40.43 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.71 Total: 1.85 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.19 Total: -10.52 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 1.60 Total: -53.75 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.38 -8.05 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.772 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds