Wall clock time and date at job start Mon Mar 30 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46993 * 2 1 4 4 C 1.53004 * 109.46876 * 120.00173 * 2 1 3 5 5 C 1.50701 * 109.46745 * 185.00008 * 4 2 1 6 6 C 1.39866 * 126.04063 * 269.68736 * 5 4 2 7 7 N 1.30840 * 108.20526 * 179.81847 * 6 5 4 8 8 N 1.40086 * 108.20092 * 0.44453 * 7 6 5 9 9 C 1.46504 * 126.03636 * 179.69770 * 8 7 6 10 10 C 1.34945 * 107.92760 * 359.71302 * 8 7 6 11 11 N 1.46898 * 109.46832 * 239.99920 * 2 1 3 12 12 C 1.46898 * 110.99934 * 85.00405 * 11 2 1 13 13 C 1.52997 * 109.47390 * 179.97438 * 12 11 2 14 14 H 1.09004 * 109.46881 * 54.99442 * 13 12 11 15 15 C 1.47201 * 109.47013 * 295.00280 * 13 12 11 16 16 N 4.90936 * 135.91433 * 247.77005 * 2 1 3 17 17 C 1.52997 * 109.47504 * 174.99803 * 13 12 11 18 18 C 1.50701 * 109.47212 * 184.99949 * 17 13 12 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 13 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 13 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 H 1.09000 * 109.47278 * 59.99844 * 1 2 3 27 27 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47269 * 299.99731 * 1 2 3 29 29 H 1.08999 * 109.47212 * 304.99776 * 4 2 1 30 30 H 1.08999 * 109.47231 * 64.99903 * 4 2 1 31 31 H 1.07999 * 125.89985 * 0.02562 * 6 5 4 32 32 H 1.08996 * 109.46749 * 270.02142 * 9 8 7 33 33 H 1.09001 * 109.46695 * 30.02143 * 9 8 7 34 34 H 1.08997 * 109.47007 * 150.01830 * 9 8 7 35 35 H 1.08003 * 126.13006 * 180.02562 * 10 8 7 36 36 H 1.00893 * 111.00632 * 321.04265 * 11 2 1 37 37 H 1.09003 * 109.47230 * 59.99766 * 12 11 2 38 38 H 1.08998 * 109.46947 * 299.99824 * 12 11 2 39 39 H 1.09002 * 109.47153 * 64.99951 * 17 13 12 40 40 H 1.09001 * 109.46832 * 305.00142 * 17 13 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.4549 -1.5194 0.7608 7 7 5.6633 -1.0884 1.0177 8 7 5.5571 0.1004 1.7512 9 6 6.6731 0.9088 2.2487 10 6 4.2454 0.3693 1.9188 11 7 2.0196 -0.6925 -1.1994 12 6 2.0824 0.2226 -2.3468 13 6 2.5961 -0.5328 -3.5742 14 1 1.9708 -1.4082 -3.7500 15 6 3.9851 -0.9610 -3.3409 16 7 5.0564 -1.2922 -3.1617 17 6 2.5439 0.3852 -4.7970 18 6 2.9329 -0.3937 -6.0270 19 1 3.1910 -1.4392 -5.9449 20 6 2.9581 0.2280 -7.2574 21 7 2.6432 1.5009 -7.3574 22 14 3.4395 -0.7378 -8.7821 23 1 2.4951 -1.8682 -8.9708 24 1 3.3889 0.1534 -9.9690 25 1 4.8177 -1.2661 -8.6188 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -0.2618 2.1370 30 1 1.7516 -1.7716 1.2056 31 1 4.2057 -2.4166 0.2139 32 1 6.9510 0.5694 3.2465 33 1 7.5259 0.8026 1.5781 34 1 6.3727 1.9556 2.2914 35 1 3.8313 1.2182 2.4426 36 1 1.4496 -1.4979 -1.4100 37 1 2.7589 1.0462 -2.1182 38 1 1.0871 0.6163 -2.5524 39 1 3.2369 1.2150 -4.6582 40 1 1.5323 0.7730 -4.9172 41 1 2.6613 1.9384 -8.2230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591769928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:12 Heat of formation + Delta-G solvation = 87.383776 kcal Electronic energy + Delta-G solvation = -20951.220810 eV Core-core repulsion = 17867.403127 eV Total energy + Delta-G solvation = -3083.817684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99111 -37.80825 -35.95100 -33.85909 -33.21606 -32.33235 -30.83040 -29.35019 -27.61682 -26.16211 -25.17052 -22.79413 -21.74048 -21.07709 -20.80329 -19.86095 -17.00144 -16.60255 -16.35581 -15.34519 -15.22616 -14.73023 -14.47467 -14.22930 -14.16204 -13.47669 -13.21633 -13.09956 -12.80310 -12.67943 -12.51991 -12.26433 -12.08508 -11.90937 -11.84456 -11.49287 -11.38679 -11.12923 -10.99477 -10.81915 -10.60842 -10.49514 -10.29580 -10.16533 -9.47902 -9.21591 -9.19254 -8.42518 -8.25106 -8.01474 -6.06579 -4.09399 2.06255 2.67860 3.07799 3.33288 3.37316 3.41528 3.87391 3.96933 4.33592 4.46071 4.59252 4.89198 4.96255 5.01692 5.05170 5.16725 5.23161 5.31577 5.32058 5.39456 5.46923 5.65377 5.73162 5.73684 5.85492 5.88550 6.01763 6.03770 6.13117 6.21677 6.35346 6.49432 6.58356 6.89398 7.15101 7.28140 7.46198 7.57172 7.65953 7.88936 7.93247 8.27174 8.71668 8.95449 9.55811 11.04372 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.004104 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.418127 B = 6821.302561 C = 7642.483172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 H 0.074 0.926 4 C -0.028 4.028 5 C -0.212 4.212 6 C 0.079 3.921 7 N -0.300 5.300 8 N -0.384 5.384 9 C 0.106 3.894 10 C 0.039 3.961 11 N -0.682 5.682 12 C 0.070 3.930 13 C 0.010 3.990 14 H 0.097 0.903 15 C 0.252 3.748 16 N -0.474 5.474 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.056 0.944 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.176 0.824 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.165 0.835 36 H 0.339 0.661 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.024 0.976 40 H 0.036 0.964 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -0.021 20.669 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.092 0.908 4 C -0.067 4.067 5 C -0.223 4.223 6 C -0.107 4.107 7 N -0.121 5.121 8 N -0.166 5.166 9 C -0.036 4.036 10 C -0.106 4.106 11 N -0.312 5.312 12 C -0.060 4.060 13 C -0.012 4.012 14 H 0.115 0.885 15 C -0.066 4.066 16 N -0.150 5.150 17 C -0.006 4.006 18 C -0.563 4.563 19 H 0.074 0.926 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.193 0.807 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.182 0.818 36 H 0.157 0.843 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.259 -0.406 20.895 20.901 hybrid contribution -1.913 0.100 -1.252 2.288 sum -2.172 -0.306 19.644 19.766 Atomic orbital electron populations 1.22529 0.97459 1.02095 1.02143 1.21563 0.91704 0.98092 0.90782 0.90752 1.19892 0.89627 1.00898 0.96264 1.19858 0.96372 0.98074 1.08013 1.23641 0.89200 0.99898 0.97965 1.77412 1.22918 0.97518 1.14210 1.48366 1.05102 1.19927 1.43247 1.21740 0.88504 0.93671 0.99715 1.22195 0.84319 1.00931 1.03189 1.60559 1.57230 1.09729 1.03697 1.22032 0.99871 0.95203 0.88901 1.19181 0.84580 1.00633 0.96782 0.88503 1.28810 0.94751 0.92251 0.90744 1.80991 1.12738 1.10177 1.11127 1.19146 0.98610 0.93899 0.88983 1.21120 1.46559 0.96668 0.91978 0.92558 1.24947 0.95052 0.94862 0.99087 1.69931 1.48389 1.09939 1.24906 0.86663 0.79312 0.79881 0.82276 1.20051 1.21223 1.20225 0.92377 0.92405 0.92426 0.91704 0.91278 0.80702 0.91283 0.89550 0.89920 0.81781 0.84291 0.91009 0.93581 0.95757 0.94595 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.16 37.16 0.34 -1.22 16 2 C 0.09 0.91 2.58 -67.71 -0.17 0.74 16 3 H 0.07 0.84 7.80 -51.93 -0.40 0.44 16 4 C -0.03 -0.27 5.38 -27.88 -0.15 -0.42 16 5 C -0.21 -2.62 5.09 -105.05 -0.53 -3.15 16 6 C 0.08 1.19 11.92 -17.36 -0.21 0.98 16 7 N -0.30 -4.94 12.58 30.62 0.39 -4.56 16 8 N -0.38 -5.04 4.01 -68.16 -0.27 -5.31 16 9 C 0.11 0.92 11.47 59.85 0.69 1.61 16 10 C 0.04 0.45 11.40 -17.22 -0.20 0.25 16 11 N -0.68 -8.50 5.63 -106.73 -0.60 -9.10 16 12 C 0.07 1.04 4.85 -3.83 -0.02 1.02 16 13 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 14 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 15 C 0.25 5.41 13.67 -20.77 -0.28 5.13 16 16 N -0.47 -11.17 18.53 42.14 0.78 -10.39 16 17 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 18 C -0.53 -14.19 8.60 -34.44 -0.30 -14.49 16 19 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.18 2.54 8.06 -52.49 -0.42 2.11 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.34 3.80 8.47 -39.30 -0.33 3.46 16 37 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 38 H 0.05 0.63 7.44 -51.93 -0.39 0.24 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -33.53 353.89 -6.47 -40.00 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.54 Total: -0.11 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.27 Total: -7.30 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 1.03 Total: -54.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.53 -6.47 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591769928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.384 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds