Wall clock time and date at job start Mon Mar 30 2020 02:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46993 * 2 1 4 4 C 1.53004 * 109.46876 * 120.00173 * 2 1 3 5 5 C 1.50701 * 109.46745 * 185.00008 * 4 2 1 6 6 C 1.39866 * 126.04063 * 269.68736 * 5 4 2 7 7 N 1.30840 * 108.20526 * 179.81847 * 6 5 4 8 8 N 1.40086 * 108.20092 * 0.44453 * 7 6 5 9 9 C 1.46504 * 126.03636 * 179.69770 * 8 7 6 10 10 C 1.34945 * 107.92760 * 359.71302 * 8 7 6 11 11 N 1.46898 * 109.46832 * 239.99920 * 2 1 3 12 12 C 1.46898 * 110.99934 * 85.00405 * 11 2 1 13 13 C 1.52997 * 109.47390 * 179.97438 * 12 11 2 14 14 H 1.09004 * 109.46881 * 54.99442 * 13 12 11 15 15 C 1.47201 * 109.47013 * 295.00280 * 13 12 11 16 16 N 4.90936 * 135.91433 * 247.77005 * 2 1 3 17 17 C 1.52997 * 109.47504 * 174.99803 * 13 12 11 18 18 C 1.50701 * 109.47212 * 184.99949 * 17 13 12 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 13 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 13 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 H 1.09000 * 109.47278 * 59.99844 * 1 2 3 27 27 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47269 * 299.99731 * 1 2 3 29 29 H 1.08999 * 109.47212 * 304.99776 * 4 2 1 30 30 H 1.08999 * 109.47231 * 64.99903 * 4 2 1 31 31 H 1.07999 * 125.89985 * 0.02562 * 6 5 4 32 32 H 1.08996 * 109.46749 * 270.02142 * 9 8 7 33 33 H 1.09001 * 109.46695 * 30.02143 * 9 8 7 34 34 H 1.08997 * 109.47007 * 150.01830 * 9 8 7 35 35 H 1.08003 * 126.13006 * 180.02562 * 10 8 7 36 36 H 1.00893 * 111.00632 * 321.04265 * 11 2 1 37 37 H 1.09003 * 109.47230 * 59.99766 * 12 11 2 38 38 H 1.08998 * 109.46947 * 299.99824 * 12 11 2 39 39 H 1.09002 * 109.47153 * 64.99951 * 17 13 12 40 40 H 1.09001 * 109.46832 * 305.00142 * 17 13 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.4549 -1.5194 0.7608 7 7 5.6633 -1.0884 1.0177 8 7 5.5571 0.1004 1.7512 9 6 6.6731 0.9088 2.2487 10 6 4.2454 0.3693 1.9188 11 7 2.0196 -0.6925 -1.1994 12 6 2.0824 0.2226 -2.3468 13 6 2.5961 -0.5328 -3.5742 14 1 1.9708 -1.4082 -3.7500 15 6 3.9851 -0.9610 -3.3409 16 7 5.0564 -1.2922 -3.1617 17 6 2.5439 0.3852 -4.7970 18 6 2.9329 -0.3937 -6.0270 19 1 3.1910 -1.4392 -5.9449 20 6 2.9581 0.2280 -7.2574 21 7 2.6432 1.5009 -7.3574 22 14 3.4395 -0.7378 -8.7821 23 1 2.4951 -1.8682 -8.9708 24 1 3.3889 0.1534 -9.9690 25 1 4.8177 -1.2661 -8.6188 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -0.2618 2.1370 30 1 1.7516 -1.7716 1.2056 31 1 4.2057 -2.4166 0.2139 32 1 6.9510 0.5694 3.2465 33 1 7.5259 0.8026 1.5781 34 1 6.3727 1.9556 2.2914 35 1 3.8313 1.2182 2.4426 36 1 1.4496 -1.4979 -1.4100 37 1 2.7589 1.0462 -2.1182 38 1 1.0871 0.6163 -2.5524 39 1 3.2369 1.2150 -4.6582 40 1 1.5323 0.7730 -4.9172 41 1 2.6613 1.9384 -8.2230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591769928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:11 Heat of formation + Delta-G solvation = 65.696322 kcal Electronic energy + Delta-G solvation = -20952.161249 eV Core-core repulsion = 17867.403127 eV Total energy + Delta-G solvation = -3084.758122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94264 -39.01712 -37.37620 -35.59138 -34.47590 -33.72908 -32.06649 -30.48304 -28.38447 -27.85039 -26.03564 -24.33496 -23.43765 -21.97988 -21.78358 -20.76837 -18.59746 -18.23907 -17.59267 -16.65359 -16.22755 -16.08110 -15.75764 -15.35849 -15.21069 -14.71286 -14.45621 -14.17631 -14.14366 -13.83931 -13.69150 -13.45332 -13.37786 -13.21550 -13.01607 -12.89005 -12.66550 -12.62645 -12.44809 -12.39504 -12.11666 -11.87718 -11.58597 -11.36325 -11.26474 -11.06458 -10.55122 -10.22339 -9.20715 -8.94410 -8.19411 -6.27610 1.12938 1.40179 1.42416 1.49289 1.85279 2.07431 2.14971 2.22204 2.41561 3.15920 3.32801 3.45876 3.80764 4.13266 4.17510 4.31403 4.37925 4.40228 4.43706 4.51255 4.61686 4.66485 4.75119 4.79770 4.84796 4.88298 5.03926 5.10824 5.16000 5.21711 5.32093 5.46402 5.47568 5.54033 5.63191 5.79548 5.90096 6.16991 6.29833 6.37306 6.75209 6.84315 6.92976 7.00453 7.40862 8.91421 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.004104 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.418127 B = 6821.302561 C = 7642.483172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.093 3.907 3 H 0.065 0.935 4 C -0.020 4.020 5 C -0.222 4.222 6 C 0.060 3.940 7 N -0.355 5.355 8 N -0.390 5.390 9 C 0.097 3.903 10 C 0.043 3.957 11 N -0.690 5.690 12 C 0.086 3.914 13 C 0.021 3.979 14 H 0.120 0.880 15 C 0.263 3.737 16 N -0.514 5.514 17 C 0.039 3.961 18 C -0.539 4.539 19 H 0.053 0.947 20 C 0.012 3.988 21 N -0.924 5.924 22 Si 0.948 3.052 23 H -0.261 1.261 24 H -0.281 1.281 25 H -0.283 1.283 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.167 0.833 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.205 0.795 36 H 0.348 0.652 37 H 0.055 0.945 38 H 0.064 0.936 39 H -0.006 1.006 40 H 0.035 0.965 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 0.177 21.994 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.017 4.017 3 H 0.083 0.917 4 C -0.059 4.059 5 C -0.233 4.233 6 C -0.125 4.125 7 N -0.177 5.177 8 N -0.173 5.173 9 C -0.044 4.044 10 C -0.102 4.102 11 N -0.322 5.322 12 C -0.044 4.044 13 C -0.001 4.001 14 H 0.137 0.863 15 C -0.053 4.053 16 N -0.191 5.191 17 C 0.000 4.000 18 C -0.577 4.577 19 H 0.072 0.928 20 C -0.187 4.187 21 N -0.564 5.564 22 Si 0.773 3.227 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.209 1.209 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.184 0.816 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.221 0.779 36 H 0.167 0.833 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.013 0.987 40 H 0.054 0.946 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.907 -0.224 22.232 22.315 hybrid contribution -1.366 0.076 -1.607 2.110 sum -3.273 -0.148 20.625 20.884 Atomic orbital electron populations 1.22438 0.95655 1.02785 1.02571 1.21568 0.92998 0.97351 0.89803 0.91667 1.19917 0.87830 1.01350 0.96844 1.20181 0.97608 0.97640 1.07855 1.23715 0.89845 1.00397 0.98511 1.77303 1.24150 0.99822 1.16435 1.48715 1.06762 1.19232 1.42595 1.22055 0.87338 0.94836 1.00149 1.22870 0.83616 1.01487 1.02263 1.60486 1.58410 1.09821 1.03501 1.21755 1.00010 0.94471 0.88178 1.19185 0.83483 1.00790 0.96674 0.86265 1.29375 0.95142 0.91172 0.89607 1.80995 1.14001 1.11645 1.12498 1.18967 0.97445 0.93485 0.90065 1.21538 1.45958 0.96854 0.93393 0.92837 1.25709 0.95254 0.95738 1.02006 1.70027 1.49570 1.11212 1.25587 0.85763 0.78690 0.79049 0.79163 1.18541 1.20633 1.20916 0.93148 0.91585 0.90801 0.89076 0.90962 0.81630 0.89375 0.90766 0.86966 0.77861 0.83263 0.92669 0.91789 0.98730 0.94631 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.16 71.98 0.66 -1.76 16 2 C 0.09 1.67 2.58 44.92 0.12 1.78 16 3 H 0.06 1.32 7.80 -2.39 -0.02 1.30 16 4 C -0.02 -0.34 5.38 29.85 0.16 -0.18 16 5 C -0.22 -5.16 5.09 -20.14 -0.10 -5.26 16 6 C 0.06 1.84 11.92 85.23 1.02 2.86 16 7 N -0.35 -11.97 12.58 -57.02 -0.72 -12.69 16 8 N -0.39 -9.92 4.01 -369.56 -1.48 -11.40 16 9 C 0.10 1.57 11.47 127.77 1.47 3.03 16 10 C 0.04 0.91 11.40 83.54 0.95 1.86 16 11 N -0.69 -16.08 5.63 -491.57 -2.77 -18.85 16 12 C 0.09 2.46 4.85 86.30 0.42 2.88 16 13 C 0.02 0.75 2.35 -12.60 -0.03 0.72 16 14 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 15 C 0.26 11.38 13.67 89.45 1.22 12.61 16 16 N -0.51 -24.68 18.53 20.00 0.37 -24.31 16 17 C 0.04 1.85 4.42 29.85 0.13 1.98 16 18 C -0.54 -29.15 8.60 25.60 0.22 -28.93 16 19 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 20 C 0.01 0.66 5.46 84.66 0.46 1.12 16 21 N -0.92 -53.82 13.29 21.45 0.28 -53.54 16 22 Si 0.95 44.12 29.54 68.60 2.03 46.14 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 26 H 0.05 0.79 7.45 -2.39 -0.02 0.77 16 27 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.17 5.05 8.06 -2.91 -0.02 5.03 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.35 7.05 8.47 -89.70 -0.76 6.29 16 37 H 0.05 1.77 8.05 -2.39 -0.02 1.75 16 38 H 0.06 1.61 7.44 -2.39 -0.02 1.60 16 39 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -73.80 353.89 4.66 -69.13 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.25 Total: 12.80 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 6.69 Total: -7.29 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -4.31 Total: -120.79 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -73.80 4.66 -69.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591769928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.831 kcal (2) G-P(sol) polarization free energy of solvation -73.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds