Wall clock time and date at job start Mon Mar 30 2020 01:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99620 * 2 1 4 4 H 1.48502 * 109.47070 * 239.99937 * 3 2 1 5 5 H 1.48503 * 109.47224 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47235 * 119.99972 * 3 2 1 7 7 C 1.37879 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99705 * 173.59955 * 7 2 1 9 9 C 1.50696 * 119.99706 * 353.60895 * 7 2 1 10 10 C 1.52994 * 115.55622 * 85.44228 * 9 7 2 11 11 N 1.46906 * 109.47160 * 65.04359 * 10 9 7 12 12 C 1.46900 * 110.99901 * 185.35374 * 11 10 9 13 13 C 1.52998 * 109.47121 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.40528 * 305.16803 * 13 12 11 15 15 C 1.53286 * 109.40319 * 64.99819 * 13 12 11 16 16 N 1.47627 * 108.50754 * 182.82843 * 15 13 12 17 17 C 1.39691 * 116.08958 * 316.75281 * 16 15 13 18 18 C 1.35089 * 129.51977 * 192.61061 * 17 16 15 19 19 C 1.40088 * 107.60296 * 179.84404 * 18 17 16 20 20 N 1.31140 * 108.39149 * 0.02562 * 19 18 17 21 21 N 1.35871 * 122.52962 * 12.51660 * 17 16 15 22 22 C 1.46527 * 123.78645 * 0.23066 * 21 17 16 23 23 C 1.53006 * 117.49510 * 231.10750 * 9 7 2 24 24 C 1.52999 * 117.49868 * 299.76339 * 9 7 2 25 25 H 0.96999 * 120.00413 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46976 * 305.04985 * 10 9 7 27 27 H 1.08997 * 109.47352 * 185.04569 * 10 9 7 28 28 H 1.00903 * 110.99792 * 61.39924 * 11 10 9 29 29 H 1.08997 * 109.47363 * 59.99935 * 12 11 10 30 30 H 1.09000 * 109.47018 * 300.00309 * 12 11 10 31 31 H 1.09007 * 109.62864 * 63.12611 * 15 13 12 32 32 H 1.08997 * 109.63525 * 302.54257 * 15 13 12 33 33 H 0.97010 * 121.95427 * 136.76798 * 16 15 13 34 34 H 1.07998 * 126.19676 * 359.85293 * 18 17 16 35 35 H 1.07999 * 125.80255 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.56241 * 139.12255 * 22 21 17 37 37 H 1.08999 * 109.56564 * 259.46826 * 22 21 17 38 38 H 1.08996 * 117.50415 * 215.00185 * 23 9 7 39 39 H 1.09004 * 117.49717 * 0.02971 * 23 9 7 40 40 H 1.09005 * 117.49799 * 359.97438 * 24 9 7 41 41 H 1.09001 * 117.50091 * 144.97754 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1037 9 6 1.2581 -2.4950 0.1464 10 6 0.7039 -3.0869 -1.1509 11 7 1.8172 -3.4588 -2.0344 12 6 1.3231 -3.9134 -3.3410 13 6 2.5088 -4.2904 -4.2315 14 1 3.1976 -3.4479 -4.2932 15 6 3.2346 -5.4984 -3.6287 16 7 4.4127 -5.8023 -4.4648 17 6 4.2129 -5.7598 -5.8466 18 6 5.0088 -6.2024 -6.8444 19 6 4.3601 -5.9309 -8.0559 20 7 3.2167 -5.3459 -7.7911 21 7 3.0973 -5.2240 -6.4074 22 6 1.9994 -4.6358 -5.6355 23 6 1.7458 -3.4729 1.2173 24 6 0.4401 -2.7008 1.4229 25 1 -0.4851 0.8400 -0.0004 26 1 0.0765 -2.3476 -1.6487 27 1 0.1105 -3.9721 -0.9221 28 1 2.4011 -4.1604 -1.6045 29 1 0.7547 -3.1123 -3.8133 30 1 0.6803 -4.7829 -3.2038 31 1 2.5646 -6.3581 -3.6138 32 1 3.5562 -5.2637 -2.6141 33 1 5.2752 -6.0191 -4.0771 34 1 5.9709 -6.6794 -6.7288 35 1 4.7379 -6.1631 -9.0407 36 1 1.6501 -3.7295 -6.1301 37 1 1.1809 -5.3518 -5.5612 38 1 1.6717 -4.5380 0.9976 39 1 2.6062 -3.1751 1.8166 40 1 0.4422 -1.8954 2.1574 41 1 -0.4932 -3.2576 1.3383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592511271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:43 Heat of formation + Delta-G solvation = 93.266762 kcal Electronic energy + Delta-G solvation = -21206.482296 eV Core-core repulsion = 18122.919718 eV Total energy + Delta-G solvation = -3083.562578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.33441 -39.21717 -38.21805 -35.81058 -34.30547 -33.85493 -31.65231 -29.82789 -27.83961 -26.93624 -26.29023 -24.64779 -22.87650 -22.42269 -21.93251 -20.88853 -20.19724 -18.27284 -18.13809 -17.20793 -16.82643 -16.55232 -16.17684 -15.79717 -15.66822 -15.35046 -14.93336 -14.78260 -14.51710 -14.31577 -13.91616 -13.47905 -13.26869 -13.13189 -12.85004 -12.70422 -12.57204 -12.35417 -12.17206 -12.03165 -11.96970 -11.51695 -11.29140 -11.22722 -10.71904 -10.34938 -9.89439 -9.78154 -9.06248 -8.59344 -8.02791 -6.08243 1.16672 1.43802 1.44749 1.48726 1.50874 2.06250 2.39352 2.48224 3.13083 3.27998 3.48954 3.59671 3.75896 3.93202 4.02187 4.20372 4.32192 4.41780 4.45915 4.55742 4.63208 4.64387 4.71403 4.75474 4.76879 4.79496 4.95089 5.02614 5.06212 5.11444 5.15082 5.32379 5.42422 5.67608 5.77486 5.89858 5.90689 6.31956 6.37241 6.52253 6.60749 6.76260 6.95563 7.09021 7.57126 9.05796 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.003835 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.728735 B = 7298.772369 C = 7761.317001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.939 3.061 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.480 4.480 8 H 0.048 0.952 9 C 0.026 3.974 10 C 0.123 3.877 11 N -0.679 5.679 12 C 0.078 3.922 13 C -0.103 4.103 14 H 0.075 0.925 15 C 0.125 3.875 16 N -0.727 5.727 17 C 0.345 3.655 18 C -0.348 4.348 19 C 0.067 3.933 20 N -0.349 5.349 21 N -0.411 5.411 22 C 0.140 3.860 23 C -0.186 4.186 24 C -0.170 4.170 25 H 0.255 0.745 26 H 0.042 0.958 27 H 0.013 0.987 28 H 0.340 0.660 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.430 0.570 34 H 0.164 0.836 35 H 0.211 0.789 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 -14.124 -9.153 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.006 4.006 11 N -0.311 5.311 12 C -0.052 4.052 13 C -0.124 4.124 14 H 0.093 0.907 15 C 0.000 4.000 16 N -0.370 5.370 17 C 0.120 3.880 18 C -0.382 4.382 19 C -0.119 4.119 20 N -0.170 5.170 21 N -0.201 5.201 22 C 0.018 3.982 23 C -0.223 4.223 24 C -0.208 4.208 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.160 0.840 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.270 0.730 34 H 0.181 0.819 35 H 0.228 0.772 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.380 -12.742 -9.726 16.909 hybrid contribution 0.776 0.156 0.856 1.166 sum 6.156 -12.587 -8.870 16.583 Atomic orbital electron populations 1.70084 1.06784 1.26572 1.51582 1.25526 0.95420 1.01357 0.95246 0.85919 0.78558 0.80439 0.78447 1.20309 1.21510 1.20011 1.20530 0.92524 0.90150 1.48605 0.93402 1.18907 0.98079 0.93824 0.86614 1.21178 0.90887 0.95522 0.93060 1.60117 1.21617 1.45978 1.03347 1.21700 0.94510 0.99017 0.89987 1.21662 0.98619 0.99290 0.92811 0.90665 1.21784 0.87360 0.95648 0.95165 1.44198 1.13814 1.79647 0.99327 1.18531 0.88987 0.94110 0.86384 1.20664 1.05978 1.21262 0.90296 1.24259 0.91223 0.95932 1.00505 1.77221 1.22628 1.27261 0.89935 1.48729 1.17272 1.49843 1.04256 1.21721 0.87207 0.99410 0.89820 1.22988 0.96960 0.96576 1.05763 1.22443 0.93631 1.01369 1.03334 0.93597 0.93968 0.96854 0.84031 0.91613 0.93552 0.91194 0.87713 0.72981 0.81874 0.77249 0.89120 0.89078 0.88842 0.90774 0.92779 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.41 12.92 21.45 0.28 -51.14 16 2 C 0.02 1.27 5.39 84.66 0.46 1.73 16 3 Si 0.94 43.63 29.54 68.60 2.03 45.66 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.48 -25.31 8.74 25.60 0.22 -25.09 16 8 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 9 C 0.03 1.21 1.55 -52.93 -0.08 1.12 16 10 C 0.12 4.94 5.51 86.30 0.48 5.42 16 11 N -0.68 -22.36 6.38 -513.89 -3.28 -25.63 16 12 C 0.08 2.04 5.11 86.30 0.44 2.48 16 13 C -0.10 -2.37 2.57 -10.60 -0.03 -2.40 16 14 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 15 C 0.12 2.36 6.20 86.26 0.53 2.89 16 16 N -0.73 -13.94 6.08 -342.16 -2.08 -16.03 16 17 C 0.34 8.35 7.58 130.82 0.99 9.35 16 18 C -0.35 -7.66 10.83 21.99 0.24 -7.42 16 19 C 0.07 1.51 12.03 85.25 1.03 2.54 16 20 N -0.35 -9.96 12.63 -56.72 -0.72 -10.68 16 21 N -0.41 -11.09 4.07 -344.58 -1.40 -12.49 16 22 C 0.14 3.28 6.62 86.47 0.57 3.85 16 23 C -0.19 -7.20 9.96 30.62 0.30 -6.90 16 24 C -0.17 -7.57 9.41 30.62 0.29 -7.28 16 25 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 26 H 0.04 1.99 8.13 -2.39 -0.02 1.97 16 27 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 28 H 0.34 9.72 6.99 -89.69 -0.63 9.09 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.10 1.80 6.58 -2.39 -0.02 1.79 16 33 H 0.43 6.21 8.96 -92.70 -0.83 5.38 16 34 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 38 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 40 H 0.05 2.67 8.14 -2.38 -0.02 2.65 16 41 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -64.43 336.80 -0.16 -64.59 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.43 Total: 25.42 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 5.44 Total: -19.70 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -7.20 Total: -115.97 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -64.43 -0.16 -64.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592511271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.854 kcal (2) G-P(sol) polarization free energy of solvation -64.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds