Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50691 * 119.99927 * 2 1 4 4 N 1.46896 * 109.47327 * 235.89024 * 3 2 1 5 5 C 1.46903 * 111.00071 * 62.14129 * 4 3 2 6 6 C 1.50698 * 109.47088 * 74.46699 * 5 4 3 7 7 H 1.07999 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99926 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99729 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 119.99928 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.47333 * 90.00190 * 10 8 6 12 12 H 1.48502 * 109.47212 * 209.99851 * 10 8 6 13 13 H 1.48497 * 109.47397 * 330.00084 * 10 8 6 14 14 C 1.46903 * 110.99838 * 298.18934 * 4 3 2 15 15 C 1.53000 * 109.47228 * 293.95128 * 14 4 3 16 16 H 1.09000 * 109.40164 * 54.99472 * 15 14 4 17 17 C 1.53276 * 109.40322 * 295.16580 * 15 14 4 18 18 N 1.47635 * 108.51139 * 177.01370 * 17 15 14 19 19 C 1.39688 * 116.03211 * 43.36413 * 18 17 15 20 20 C 1.35097 * 129.51717 * 167.32761 * 19 18 17 21 21 C 1.40096 * 107.60478 * 180.15805 * 20 19 18 22 22 N 1.31137 * 108.39019 * 359.97438 * 21 20 19 23 23 N 1.35864 * 122.53551 * 347.42955 * 19 18 17 24 24 C 1.46531 * 123.78474 * 359.77104 * 23 19 18 25 25 H 1.08006 * 120.00344 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00143 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99838 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47512 * 355.88756 * 3 2 1 29 29 H 1.08996 * 109.47530 * 115.89058 * 3 2 1 30 30 H 1.09000 * 109.47062 * 194.46697 * 5 4 3 31 31 H 1.08998 * 109.47243 * 314.46166 * 5 4 3 32 32 H 0.97005 * 119.99485 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47090 * 53.95322 * 14 4 3 34 34 H 1.09001 * 109.47029 * 173.94893 * 14 4 3 35 35 H 1.08996 * 109.63481 * 296.80021 * 17 15 14 36 36 H 1.09000 * 109.63274 * 57.38885 * 17 15 14 37 37 H 0.97001 * 122.01127 * 223.29859 * 18 17 15 38 38 H 1.08001 * 126.19694 * 0.13825 * 20 19 18 39 39 H 1.07995 * 125.80302 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.56313 * 220.85534 * 24 23 19 41 41 H 1.09005 * 109.56155 * 100.51188 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9809 1.3408 -1.1467 5 6 2.2420 1.2724 -2.4145 6 6 1.5771 2.5984 -2.6806 7 1 1.6917 3.4106 -1.9780 8 6 0.8217 2.7744 -3.8205 9 7 0.2412 3.9315 -4.0525 10 14 0.6230 1.3694 -5.0354 11 1 -0.5692 0.5632 -4.6692 12 1 0.4475 1.9193 -6.4037 13 1 1.8326 0.5088 -4.9991 14 6 3.9759 0.2637 -1.0585 15 6 4.8880 0.5092 0.1451 16 1 4.2807 0.6154 1.0439 17 6 5.6934 1.7937 -0.0799 18 7 6.5118 2.0504 1.1218 19 6 7.1585 0.9410 1.6715 20 6 8.1357 0.8898 2.6029 21 6 8.4494 -0.4591 2.8142 22 7 7.6858 -1.1883 2.0365 23 7 6.8616 -0.3334 1.3057 24 6 5.8416 -0.6793 0.3122 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3575 2.1322 -0.0737 29 1 2.6337 1.3954 0.9245 30 1 2.9328 1.0430 -3.2258 31 1 1.4837 0.4919 -2.3515 32 1 -0.2906 4.0551 -4.8543 33 1 3.4666 -0.6926 -0.9395 34 1 4.5738 0.2459 -1.9698 35 1 6.3423 1.6720 -0.9471 36 1 5.0124 2.6291 -0.2429 37 1 6.5964 2.9368 1.5065 38 1 8.5926 1.7356 3.0952 39 1 9.1936 -0.8347 3.5008 40 1 5.2824 -1.5511 0.6516 41 1 6.3211 -0.8996 -0.6416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592515160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = 98.031758 kcal Electronic energy + Delta-G solvation = -21630.747721 eV Core-core repulsion = 18547.391768 eV Total energy + Delta-G solvation = -3083.355952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.31502 -39.72738 -37.51995 -34.87451 -34.67132 -33.65003 -31.94190 -29.99572 -29.33052 -27.27380 -26.33968 -25.31022 -22.86008 -22.32970 -21.97842 -20.36838 -20.02382 -18.83432 -18.24827 -17.04559 -16.93618 -16.69106 -16.16565 -16.08566 -15.75279 -15.50848 -15.02570 -14.65550 -14.59497 -14.30405 -14.20451 -13.62362 -13.39721 -13.20770 -13.07861 -12.68220 -12.48945 -12.22956 -12.16255 -12.07959 -11.83491 -11.76466 -11.49156 -11.38761 -11.19107 -10.74723 -10.23746 -9.75269 -8.98187 -8.55815 -8.23594 -6.24676 1.19328 1.36121 1.37419 1.39591 1.47119 1.51476 2.08345 2.36943 2.44433 3.09522 3.13138 3.60109 3.64006 3.93002 4.03915 4.07720 4.23785 4.25067 4.39490 4.47235 4.54712 4.60410 4.70009 4.78618 4.80669 4.95429 4.97367 4.98488 5.03568 5.07087 5.14229 5.24518 5.47410 5.61331 5.69660 5.82074 5.92427 6.06930 6.36587 6.40628 6.63092 6.66630 6.82143 7.11536 7.38333 8.93103 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.026978 B = 0.004216 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.648556 B = 6640.382882 C = 6910.900986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.191 4.191 3 C 0.089 3.911 4 N -0.524 5.524 5 C 0.171 3.829 6 C -0.502 4.502 7 H 0.038 0.962 8 C 0.009 3.991 9 N -0.950 5.950 10 Si 0.938 3.062 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.246 1.246 14 C 0.062 3.938 15 C -0.098 4.098 16 H 0.082 0.918 17 C 0.132 3.868 18 N -0.730 5.730 19 C 0.346 3.654 20 C -0.351 4.351 21 C 0.068 3.932 22 N -0.346 5.346 23 N -0.411 5.411 24 C 0.140 3.860 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.028 0.972 31 H -0.004 1.004 32 H 0.264 0.736 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.427 0.573 38 H 0.161 0.839 39 H 0.211 0.789 40 H 0.098 0.902 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.938 -9.340 11.035 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.211 4.211 3 C -0.039 4.039 4 N -0.246 5.246 5 C 0.044 3.956 6 C -0.541 4.541 7 H 0.057 0.943 8 C -0.188 4.188 9 N -0.592 5.592 10 Si 0.762 3.238 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.169 1.169 14 C -0.067 4.067 15 C -0.119 4.119 16 H 0.100 0.900 17 C 0.008 3.992 18 N -0.372 5.372 19 C 0.121 3.879 20 C -0.385 4.385 21 C -0.118 4.118 22 N -0.168 5.168 23 N -0.200 5.200 24 C 0.019 3.981 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.137 0.863 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.267 0.733 38 H 0.178 0.822 39 H 0.227 0.773 40 H 0.116 0.884 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.629 -10.073 10.312 18.521 hybrid contribution -0.831 0.377 -0.439 1.013 sum 10.797 -9.695 9.873 17.552 Atomic orbital electron populations 1.23951 0.96356 1.01845 0.99942 1.23637 0.96832 0.99890 1.00709 1.21242 0.94486 0.94297 0.93864 1.62082 1.15635 1.44561 1.02373 1.19945 0.92530 0.94885 0.88190 1.21228 1.28750 0.98046 1.06050 0.94333 1.25745 0.95224 0.97913 0.99896 1.70051 1.35056 1.25875 1.28197 0.85849 0.79781 0.79913 0.78211 1.19715 1.21323 1.16937 1.22013 0.93639 0.93610 0.97460 1.21657 0.95816 0.94381 1.00072 0.89999 1.21628 0.92883 0.98398 0.86264 1.44338 1.53953 1.07130 1.31798 1.18527 0.93071 0.82005 0.94267 1.20652 1.07626 0.98863 1.11346 1.24233 0.98264 0.91688 0.97628 1.77205 1.09817 1.17314 1.12424 1.48715 1.32576 1.02895 1.35853 1.21733 0.87247 0.98818 0.90309 0.89850 0.87208 0.86273 0.92624 0.89598 0.95376 0.98592 0.92727 0.93060 0.90073 0.92291 0.88319 0.73292 0.82157 0.77260 0.88352 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.49 14.30 67.78 0.97 -4.52 16 2 C -0.19 -5.65 7.46 25.64 0.19 -5.46 16 3 C 0.09 2.91 5.47 85.55 0.47 3.38 16 4 N -0.52 -18.14 4.05 -905.39 -3.66 -21.81 16 5 C 0.17 7.37 3.69 85.56 0.32 7.69 16 6 C -0.50 -27.21 9.18 25.60 0.24 -26.98 16 7 H 0.04 2.35 7.91 -2.91 -0.02 2.33 16 8 C 0.01 0.51 5.47 84.65 0.46 0.97 16 9 N -0.95 -57.93 13.96 21.45 0.30 -57.63 16 10 Si 0.94 42.44 27.47 68.60 1.88 44.33 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.25 -10.15 6.54 99.48 0.65 -9.50 16 14 C 0.06 1.61 4.14 86.30 0.36 1.97 16 15 C -0.10 -2.25 2.28 -10.61 -0.02 -2.27 16 16 H 0.08 2.00 6.30 -2.39 -0.02 1.99 16 17 C 0.13 3.10 6.28 86.25 0.54 3.64 16 18 N -0.73 -15.87 6.09 -342.17 -2.08 -17.95 16 19 C 0.35 8.63 7.58 130.83 0.99 9.62 16 20 C -0.35 -7.89 10.83 22.00 0.24 -7.65 16 21 C 0.07 1.52 12.03 85.25 1.03 2.54 16 22 N -0.35 -9.57 12.63 -56.72 -0.72 -10.29 16 23 N -0.41 -10.86 4.07 -344.60 -1.40 -12.26 16 24 C 0.14 3.13 6.62 86.47 0.57 3.70 16 25 H 0.08 2.77 7.84 -2.91 -0.02 2.75 16 26 H 0.11 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.12 3.02 6.73 -2.91 -0.02 3.00 16 28 H 0.06 2.21 7.08 -2.39 -0.02 2.19 16 29 H 0.09 2.44 6.29 -2.39 -0.02 2.43 16 30 H 0.03 1.21 6.82 -2.39 -0.02 1.19 16 31 H 0.00 -0.16 6.16 -2.39 -0.01 -0.17 16 32 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 33 H 0.05 1.23 6.23 -2.39 -0.01 1.21 16 34 H 0.08 2.06 7.84 -2.39 -0.02 2.05 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 2.57 7.69 -2.39 -0.02 2.55 16 37 H 0.43 7.53 8.96 -92.71 -0.83 6.70 16 38 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.21 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.09 1.80 8.12 -2.38 -0.02 1.78 16 Total: -1.00 -66.56 327.06 0.80 -65.76 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.14 Total: 23.20 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 6.34 Total: -13.35 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -7.56 Total: -119.94 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.33 kcal Total: -66.56 0.80 -65.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592515160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.789 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds