Wall clock time and date at job start Mon Mar 30 2020 02:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47458 * 2 1 4 4 N 1.46502 * 109.46930 * 120.00331 * 2 1 3 5 5 C 1.35190 * 125.72484 * 274.99471 * 4 2 1 6 6 C 1.36706 * 106.01900 * 179.97438 * 5 4 2 7 7 C 1.47880 * 126.93456 * 179.97438 * 6 5 4 8 8 C 1.31170 * 116.63838 * 0.02562 * 7 6 5 9 9 C 1.49887 * 123.50422 * 173.57162 * 8 7 6 10 10 C 1.53282 * 110.78142 * 51.17831 * 9 8 7 11 11 N 1.46440 * 106.83482 * 271.96437 * 10 9 8 12 12 C 1.36937 * 120.86685 * 211.71130 * 11 10 9 13 13 H 1.08003 * 120.00234 * 157.60902 * 12 11 10 14 14 C 1.38810 * 119.99961 * 337.60747 * 12 11 10 15 15 N 1.31618 * 120.00315 * 348.61935 * 14 12 11 16 16 Si 1.86801 * 119.99894 * 168.61604 * 14 12 11 17 17 H 1.48496 * 109.47125 * 60.00227 * 16 14 12 18 18 H 1.48500 * 109.46982 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47330 * 300.00185 * 16 14 12 20 20 C 1.47418 * 118.26925 * 31.73604 * 11 10 9 21 21 C 1.49660 * 116.63327 * 180.02562 * 7 6 5 22 22 N 1.34630 * 106.13168 * 0.22875 * 6 5 4 23 23 N 1.28609 * 108.76845 * 359.62434 * 22 6 5 24 24 H 1.09003 * 109.47179 * 300.00187 * 1 2 3 25 25 H 1.09008 * 109.46800 * 59.99883 * 1 2 3 26 26 H 1.08995 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47179 * 239.99813 * 2 1 3 28 28 H 1.09004 * 109.47266 * 60.00269 * 3 2 1 29 29 H 1.09002 * 109.47535 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47159 * 299.99595 * 3 2 1 31 31 H 1.08001 * 126.99322 * 359.94463 * 5 4 2 32 32 H 1.07999 * 118.24210 * 353.56947 * 8 7 6 33 33 H 1.08997 * 109.21611 * 290.84121 * 9 8 7 34 34 H 1.09001 * 109.21592 * 171.51588 * 9 8 7 35 35 H 1.09001 * 109.97530 * 152.63975 * 10 9 8 36 36 H 1.08996 * 109.97941 * 31.29587 * 10 9 8 37 37 H 0.96998 * 120.00262 * 180.02562 * 15 14 12 38 38 H 1.08991 * 109.86407 * 176.81196 * 20 11 10 39 39 H 1.08999 * 109.85979 * 297.78333 * 20 11 10 40 40 H 1.09001 * 109.05401 * 90.70359 * 21 7 6 41 41 H 1.08998 * 108.99556 * 331.76517 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1913 -0.1319 2.4150 6 6 2.6575 -1.1298 3.2247 7 6 3.0027 -1.0223 4.6586 8 6 2.8450 0.1551 5.2149 9 6 3.0133 0.4058 6.6830 10 6 4.3531 -0.1494 7.1794 11 7 4.1212 -1.5464 7.5524 12 6 4.8311 -2.1296 8.5678 13 1 4.4349 -2.9971 9.0748 14 6 6.0598 -1.6059 8.9455 15 7 6.6474 -0.6985 8.1947 16 14 6.8795 -2.1888 10.5196 17 1 7.1225 -3.6515 10.4388 18 1 8.1728 -1.4807 10.6959 19 1 5.9945 -1.8973 11.6760 20 6 3.1040 -2.3088 6.8057 21 6 3.4959 -2.2682 5.3252 22 7 2.7444 -2.2288 2.4519 23 7 2.3540 -1.9307 1.2633 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 2.0005 0.8942 2.6924 32 1 2.5797 0.9883 4.5810 33 1 2.2012 -0.0786 7.2251 34 1 2.9783 1.4791 6.8700 35 1 4.6920 0.4164 8.0473 36 1 5.0965 -0.0947 6.3842 37 1 7.5062 -0.3328 8.4585 38 1 3.0840 -3.3408 7.1556 39 1 2.1240 -1.8520 6.9434 40 1 4.5821 -2.3097 5.2430 41 1 3.0679 -3.1341 4.8201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595518269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:40 Heat of formation + Delta-G solvation = 135.341725 kcal Electronic energy + Delta-G solvation = -21492.350364 eV Core-core repulsion = 18410.612294 eV Total energy + Delta-G solvation = -3081.738071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.09164 -37.92667 -36.61797 -34.17019 -31.74311 -31.38563 -30.85161 -29.59804 -27.86114 -26.54000 -24.67388 -23.70935 -23.20327 -21.79068 -20.57254 -19.08134 -18.02094 -17.29956 -16.64873 -16.30966 -15.13898 -14.96853 -14.72854 -14.66301 -13.97382 -13.64046 -13.27467 -13.03651 -12.86649 -12.81500 -12.25570 -12.04316 -11.99063 -11.83879 -11.57011 -11.46764 -11.17937 -10.86717 -10.77365 -10.67664 -10.49578 -10.14718 -10.04967 -9.81873 -9.75639 -9.61902 -9.46247 -8.40220 -7.75871 -6.60115 -5.64441 -3.04555 1.56106 2.14508 2.27580 3.46116 3.50487 3.51380 3.52385 4.00683 4.30311 4.45053 4.50584 4.59588 4.91737 4.97676 5.04004 5.13603 5.22077 5.23686 5.47331 5.49430 5.54907 5.60348 5.69094 5.75765 5.95570 6.16003 6.20113 6.33543 6.41574 6.55188 6.64251 6.73776 6.76442 6.91191 7.09542 7.25535 7.45463 7.57143 7.84633 7.92672 8.50194 8.67097 9.35146 9.97334 10.52615 11.44058 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.039914 B = 0.003718 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.343445 B = 7528.933175 C = 7719.552089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 C -0.166 4.166 4 N -0.289 5.289 5 C -0.055 4.055 6 C 0.027 3.973 7 C -0.038 4.038 8 C -0.127 4.127 9 C -0.118 4.118 10 C 0.195 3.805 11 N -0.602 5.602 12 C -0.247 4.247 13 H 0.068 0.932 14 C -0.002 4.002 15 N -0.912 5.912 16 Si 0.904 3.096 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.286 1.286 20 C 0.148 3.852 21 C -0.093 4.093 22 N -0.258 5.258 23 N -0.094 5.094 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.187 0.813 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.252 0.748 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.081 0.919 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.441 6.884 -15.874 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 C -0.224 4.224 4 N -0.083 5.083 5 C -0.205 4.205 6 C -0.109 4.109 7 C -0.040 4.040 8 C -0.147 4.147 9 C -0.156 4.156 10 C 0.070 3.930 11 N -0.327 5.327 12 C -0.376 4.376 13 H 0.086 0.914 14 C -0.199 4.199 15 N -0.558 5.558 16 Si 0.734 3.266 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.212 1.212 20 C 0.022 3.978 21 C -0.132 4.132 22 N -0.125 5.125 23 N -0.073 5.073 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.203 0.797 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.099 0.901 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.141 5.620 -16.683 21.385 hybrid contribution 0.431 0.918 1.016 1.436 sum -11.710 6.538 -15.667 20.623 Atomic orbital electron populations 1.22225 0.92560 1.03806 1.03697 1.21648 0.95780 0.93707 0.85218 1.22216 1.02739 0.93324 1.04128 1.47394 1.42884 1.08342 1.09713 1.23471 1.09885 1.01759 0.85359 1.21250 1.03589 0.89526 0.96537 1.18912 1.01234 0.96851 0.87010 1.22406 0.99759 0.94980 0.97560 1.21210 1.02418 1.00315 0.91684 1.20694 0.89597 0.84101 0.98566 1.44395 1.42755 1.07635 1.37902 1.19209 0.98354 1.12044 1.08042 0.91448 1.24983 0.96094 0.99885 0.98966 1.69998 1.16589 1.32127 1.37083 0.86337 0.78534 0.78138 0.83541 1.21068 1.21770 1.21224 1.21126 0.92222 0.95628 0.88870 1.20869 1.01730 0.93235 0.97322 1.75355 1.16258 1.24503 0.96344 1.78159 1.16298 0.96137 1.16680 0.91411 0.89837 0.91270 0.86997 0.91049 0.91094 0.89525 0.79652 0.88790 0.90641 0.92507 0.91688 0.94976 0.93787 0.92484 0.95429 0.90056 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.52 37.16 0.35 -0.64 16 2 C 0.14 1.05 3.84 -67.93 -0.26 0.79 16 3 C -0.17 -0.91 8.83 37.15 0.33 -0.58 16 4 N -0.29 -3.62 3.25 -54.44 -0.18 -3.80 16 5 C -0.05 -0.73 9.85 -16.63 -0.16 -0.89 16 6 C 0.03 0.47 6.87 -83.25 -0.57 -0.10 16 7 C -0.04 -0.70 5.58 -102.94 -0.57 -1.28 16 8 C -0.13 -2.16 8.87 -36.46 -0.32 -2.49 16 9 C -0.12 -2.22 5.42 -28.13 -0.15 -2.38 16 10 C 0.20 4.72 4.36 -3.93 -0.02 4.70 16 11 N -0.60 -15.31 2.89 -172.25 -0.50 -15.81 16 12 C -0.25 -6.89 9.70 -15.06 -0.15 -7.04 16 13 H 0.07 1.83 7.85 -52.48 -0.41 1.42 16 14 C 0.00 -0.05 5.13 -17.43 -0.09 -0.14 16 15 N -0.91 -26.84 10.76 55.49 0.60 -26.24 16 16 Si 0.90 22.18 29.57 -169.99 -5.03 17.15 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.15 3.20 5.93 -3.43 -0.02 3.18 16 21 C -0.09 -1.91 5.26 -28.27 -0.15 -2.06 16 22 N -0.26 -4.83 11.83 32.99 0.39 -4.44 16 23 N -0.09 -1.54 13.13 60.35 0.79 -0.75 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.37 7.16 -51.93 -0.37 0.00 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.19 1.83 6.29 -52.49 -0.33 1.50 16 32 H 0.09 1.30 6.36 -52.49 -0.33 0.97 16 33 H 0.08 1.44 6.34 -51.93 -0.33 1.11 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.73 6.93 -51.93 -0.36 1.37 16 36 H 0.03 0.86 7.61 -51.93 -0.40 0.47 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 39 H 0.03 0.56 6.22 -51.93 -0.32 0.24 16 40 H 0.08 1.94 8.04 -51.93 -0.42 1.52 16 41 H 0.06 1.25 7.58 -51.93 -0.39 0.86 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -32.92 325.56 -6.98 -39.90 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.17 Total: -1.98 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.79 Total: -8.93 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 1.11 Total: -51.04 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.92 -6.98 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595518269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.239 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds