Wall clock time and date at job start Mon Mar 30 2020 02:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47458 * 2 1 4 4 N 1.46502 * 109.46930 * 120.00331 * 2 1 3 5 5 C 1.35190 * 125.72484 * 274.99471 * 4 2 1 6 6 C 1.36706 * 106.01900 * 179.97438 * 5 4 2 7 7 C 1.47880 * 126.93456 * 179.97438 * 6 5 4 8 8 C 1.31170 * 116.63838 * 0.02562 * 7 6 5 9 9 C 1.49887 * 123.50422 * 173.57162 * 8 7 6 10 10 C 1.53282 * 110.78142 * 51.17831 * 9 8 7 11 11 N 1.46440 * 106.83482 * 271.96437 * 10 9 8 12 12 C 1.36937 * 120.86685 * 211.71130 * 11 10 9 13 13 H 1.08003 * 120.00234 * 157.60902 * 12 11 10 14 14 C 1.38810 * 119.99961 * 337.60747 * 12 11 10 15 15 N 1.31618 * 120.00315 * 348.61935 * 14 12 11 16 16 Si 1.86801 * 119.99894 * 168.61604 * 14 12 11 17 17 H 1.48496 * 109.47125 * 60.00227 * 16 14 12 18 18 H 1.48500 * 109.46982 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47330 * 300.00185 * 16 14 12 20 20 C 1.47418 * 118.26925 * 31.73604 * 11 10 9 21 21 C 1.49660 * 116.63327 * 180.02562 * 7 6 5 22 22 N 1.34630 * 106.13168 * 0.22875 * 6 5 4 23 23 N 1.28609 * 108.76845 * 359.62434 * 22 6 5 24 24 H 1.09003 * 109.47179 * 300.00187 * 1 2 3 25 25 H 1.09008 * 109.46800 * 59.99883 * 1 2 3 26 26 H 1.08995 * 109.47249 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47179 * 239.99813 * 2 1 3 28 28 H 1.09004 * 109.47266 * 60.00269 * 3 2 1 29 29 H 1.09002 * 109.47535 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47159 * 299.99595 * 3 2 1 31 31 H 1.08001 * 126.99322 * 359.94463 * 5 4 2 32 32 H 1.07999 * 118.24210 * 353.56947 * 8 7 6 33 33 H 1.08997 * 109.21611 * 290.84121 * 9 8 7 34 34 H 1.09001 * 109.21592 * 171.51588 * 9 8 7 35 35 H 1.09001 * 109.97530 * 152.63975 * 10 9 8 36 36 H 1.08996 * 109.97941 * 31.29587 * 10 9 8 37 37 H 0.96998 * 120.00262 * 180.02562 * 15 14 12 38 38 H 1.08991 * 109.86407 * 176.81196 * 20 11 10 39 39 H 1.08999 * 109.85979 * 297.78333 * 20 11 10 40 40 H 1.09001 * 109.05401 * 90.70359 * 21 7 6 41 41 H 1.08998 * 108.99556 * 331.76517 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1913 -0.1319 2.4150 6 6 2.6575 -1.1298 3.2247 7 6 3.0027 -1.0223 4.6586 8 6 2.8450 0.1551 5.2149 9 6 3.0133 0.4058 6.6830 10 6 4.3531 -0.1494 7.1794 11 7 4.1212 -1.5464 7.5524 12 6 4.8311 -2.1296 8.5678 13 1 4.4349 -2.9971 9.0748 14 6 6.0598 -1.6059 8.9455 15 7 6.6474 -0.6985 8.1947 16 14 6.8795 -2.1888 10.5196 17 1 7.1225 -3.6515 10.4388 18 1 8.1728 -1.4807 10.6959 19 1 5.9945 -1.8973 11.6760 20 6 3.1040 -2.3088 6.8057 21 6 3.4959 -2.2682 5.3252 22 7 2.7444 -2.2288 2.4519 23 7 2.3540 -1.9307 1.2633 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 2.0005 0.8942 2.6924 32 1 2.5797 0.9883 4.5810 33 1 2.2012 -0.0786 7.2251 34 1 2.9783 1.4791 6.8700 35 1 4.6920 0.4164 8.0473 36 1 5.0965 -0.0947 6.3842 37 1 7.5062 -0.3328 8.4585 38 1 3.0840 -3.3408 7.1556 39 1 2.1240 -1.8520 6.9434 40 1 4.5821 -2.3097 5.2430 41 1 3.0679 -3.1341 4.8201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595518269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:40 Heat of formation + Delta-G solvation = 114.669944 kcal Electronic energy + Delta-G solvation = -21493.246760 eV Core-core repulsion = 18410.612294 eV Total energy + Delta-G solvation = -3082.634467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.20212 -39.55922 -37.44007 -35.86664 -33.41006 -32.83032 -32.13584 -31.13425 -28.47514 -28.13068 -26.14196 -25.38922 -24.52488 -23.05264 -21.63356 -20.78512 -19.30011 -18.85345 -18.19711 -17.33379 -16.85988 -16.35006 -15.98556 -15.68114 -15.47031 -15.08283 -14.52208 -14.17382 -13.98830 -13.74259 -13.45794 -13.40294 -13.18190 -13.08991 -12.89068 -12.67629 -12.61535 -12.49182 -12.35808 -12.17604 -12.03595 -11.76715 -11.71731 -11.63404 -11.30383 -11.16584 -10.76390 -10.51369 -9.13376 -8.67797 -7.79250 -5.22189 0.46322 0.86980 1.44466 1.48638 1.50929 1.57454 2.17721 2.55412 3.24230 3.35778 3.52401 3.73485 3.79896 3.82436 4.00285 4.02961 4.28525 4.39984 4.48964 4.59264 4.62370 4.64150 4.66713 4.72136 4.76862 4.77134 4.85930 4.92445 5.09198 5.14986 5.19076 5.19422 5.27468 5.42530 5.51972 5.68520 5.72573 5.77208 5.96108 6.02676 6.38763 7.22125 7.50970 7.93054 8.42517 9.26858 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.039914 B = 0.003718 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.343445 B = 7528.933175 C = 7719.552089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 C -0.162 4.162 4 N -0.274 5.274 5 C -0.029 4.029 6 C -0.004 4.004 7 C -0.054 4.054 8 C -0.115 4.115 9 C -0.107 4.107 10 C 0.205 3.795 11 N -0.618 5.618 12 C -0.262 4.262 13 H 0.070 0.930 14 C -0.056 4.056 15 N -0.941 5.941 16 Si 0.970 3.030 17 H -0.280 1.280 18 H -0.295 1.295 19 H -0.276 1.276 20 C 0.148 3.852 21 C -0.079 4.079 22 N -0.304 5.304 23 N -0.118 5.118 24 H 0.069 0.931 25 H 0.115 0.885 26 H 0.050 0.950 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.228 0.772 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.033 0.967 36 H -0.004 1.004 37 H 0.247 0.753 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 8.966 -16.995 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.220 4.220 4 N -0.069 5.069 5 C -0.180 4.180 6 C -0.141 4.141 7 C -0.056 4.056 8 C -0.135 4.135 9 C -0.145 4.145 10 C 0.080 3.920 11 N -0.343 5.343 12 C -0.392 4.392 13 H 0.087 0.913 14 C -0.250 4.250 15 N -0.588 5.588 16 Si 0.798 3.202 17 H -0.206 1.206 18 H -0.221 1.221 19 H -0.202 1.202 20 C 0.023 3.977 21 C -0.118 4.118 22 N -0.170 5.170 23 N -0.097 5.097 24 H 0.088 0.912 25 H 0.133 0.867 26 H 0.069 0.931 27 H 0.135 0.865 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.134 0.866 31 H 0.245 0.755 32 H 0.157 0.843 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.014 0.986 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.219 7.677 -17.844 24.073 hybrid contribution 1.020 0.280 1.258 1.643 sum -13.199 7.957 -16.586 22.641 Atomic orbital electron populations 1.22227 0.90965 1.03140 1.05392 1.22212 0.96992 0.94734 0.83489 1.22258 1.01954 0.91656 1.06111 1.47897 1.40733 1.07369 1.10901 1.23930 1.07039 1.02411 0.84625 1.21213 1.05929 0.90703 0.96281 1.18791 1.02359 0.96274 0.88226 1.22564 0.98533 0.95626 0.96804 1.21035 0.98766 1.01799 0.92928 1.20410 0.91913 0.83575 0.96129 1.44671 1.43006 1.08626 1.37985 1.19588 0.98787 1.12096 1.08725 0.91270 1.25752 0.96818 1.00412 1.02025 1.70195 1.16642 1.33378 1.38600 0.85302 0.77263 0.77609 0.80017 1.20573 1.22099 1.20235 1.21227 0.92182 0.95267 0.89029 1.20568 0.98942 0.95314 0.96941 1.75285 1.17982 1.26253 0.97484 1.78060 1.17512 0.98130 1.15959 0.91166 0.86670 0.93113 0.86477 0.90076 0.92321 0.86587 0.75538 0.84273 0.90467 0.89469 0.94855 0.98596 0.94395 0.92870 0.93187 0.94415 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.52 71.98 0.69 -0.70 16 2 C 0.13 1.51 3.84 44.99 0.17 1.69 16 3 C -0.16 -1.09 8.83 71.98 0.64 -0.45 16 4 N -0.27 -6.30 3.25 -326.15 -1.06 -7.36 16 5 C -0.03 -0.67 9.85 83.82 0.83 0.15 16 6 C 0.00 -0.13 6.87 40.91 0.28 0.15 16 7 C -0.05 -1.99 5.58 -17.84 -0.10 -2.09 16 8 C -0.12 -3.65 8.87 25.22 0.22 -3.43 16 9 C -0.11 -3.86 5.42 29.69 0.16 -3.70 16 10 C 0.20 10.10 4.36 86.49 0.38 10.48 16 11 N -0.62 -32.22 2.89 -698.87 -2.02 -34.24 16 12 C -0.26 -14.96 9.70 84.03 0.81 -14.15 16 13 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 14 C -0.06 -3.21 5.13 84.86 0.44 -2.78 16 15 N -0.94 -57.30 10.76 21.65 0.23 -57.07 16 16 Si 0.97 46.46 29.57 68.60 2.03 48.48 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 C 0.15 6.51 5.93 86.27 0.51 7.03 16 21 C -0.08 -3.36 5.26 29.59 0.16 -3.21 16 22 N -0.30 -11.53 11.83 -49.54 -0.59 -12.12 16 23 N -0.12 -3.82 13.13 37.02 0.49 -3.34 16 24 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 0.42 7.16 -2.38 -0.02 0.40 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.23 3.21 6.29 -2.91 -0.02 3.19 16 32 H 0.14 3.15 6.36 -2.91 -0.02 3.13 16 33 H 0.08 2.78 6.34 -2.39 -0.02 2.76 16 34 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.03 1.82 6.93 -2.39 -0.02 1.80 16 36 H 0.00 -0.22 7.61 -2.39 -0.02 -0.24 16 37 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.05 2.32 7.95 -2.39 -0.02 2.30 16 39 H 0.05 1.99 6.22 -2.39 -0.01 1.98 16 40 H 0.04 1.92 8.04 -2.39 -0.02 1.90 16 41 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 Total: -1.00 -76.15 325.56 5.28 -70.87 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.02 Total: 5.76 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.18 Total: -11.00 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -2.95 Total: -114.12 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -76.15 5.28 -70.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595518269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.540 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds