Wall clock time and date at job start Mon Mar 30 2020 01:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35682 * 117.00164 * 2 1 4 4 C 1.38918 * 119.68399 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11367 * 179.97438 * 4 3 2 6 6 C 1.38835 * 118.47905 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.35239 * 180.02562 * 6 5 4 8 8 N 1.46906 * 109.46645 * 90.00358 * 7 6 5 9 9 C 1.46850 * 111.00027 * 294.20772 * 8 7 6 10 10 C 1.53042 * 109.51963 * 174.16136 * 9 8 7 11 11 C 1.53121 * 109.27653 * 59.18633 * 10 9 8 12 12 C 1.53123 * 109.15815 * 302.33637 * 11 10 9 13 13 H 1.08993 * 109.54300 * 297.70073 * 12 11 10 14 14 C 1.50701 * 109.50134 * 177.59616 * 12 11 10 15 15 H 1.08002 * 120.00069 * 240.19480 * 14 12 11 16 16 C 1.37878 * 119.99533 * 60.20455 * 14 12 11 17 17 N 1.31506 * 120.00319 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99445 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47034 * 90.00064 * 18 16 14 20 20 H 1.48500 * 109.47092 * 209.99612 * 18 16 14 21 21 H 1.48498 * 109.47717 * 329.99884 * 18 16 14 22 22 C 1.46856 * 110.99746 * 170.00160 * 8 7 6 23 23 C 1.38040 * 119.29432 * 0.02562 * 6 5 4 24 24 N 1.31976 * 120.83318 * 359.97438 * 23 6 5 25 25 H 1.08997 * 109.47251 * 300.00706 * 1 2 3 26 26 H 1.08997 * 109.46674 * 60.00490 * 1 2 3 27 27 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.44387 * 359.97438 * 4 3 2 29 29 H 1.07991 * 120.75997 * 180.27321 * 5 4 3 30 30 H 1.08999 * 109.47462 * 210.00262 * 7 6 5 31 31 H 1.09000 * 109.47078 * 330.00933 * 7 6 5 32 32 H 1.09000 * 109.46660 * 294.17588 * 9 8 7 33 33 H 1.08996 * 109.45790 * 54.14780 * 9 8 7 34 34 H 1.08995 * 109.50359 * 299.23884 * 10 9 8 35 35 H 1.09001 * 109.50061 * 179.12160 * 10 9 8 36 36 H 1.09001 * 109.51871 * 182.44196 * 11 10 9 37 37 H 1.08989 * 109.57961 * 62.27766 * 11 10 9 38 38 H 0.96999 * 119.99959 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.46069 * 305.85742 * 22 8 7 40 40 H 1.08997 * 109.45964 * 65.82277 * 22 8 7 41 41 H 1.08000 * 119.58580 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0486 2.5131 -0.0011 6 6 3.2505 3.6491 -0.0016 7 6 3.8769 5.0198 -0.0028 8 7 4.0798 5.4641 -1.3882 9 6 5.0694 4.6214 -2.0716 10 6 5.1479 5.0192 -3.5473 11 6 5.5460 6.4940 -3.6528 12 6 4.5257 7.3456 -2.8922 13 1 3.5434 7.2339 -3.3510 14 6 4.9423 8.7930 -2.9412 15 1 5.1438 9.3283 -2.0250 16 6 5.0660 9.4340 -4.1557 17 7 4.8210 8.7822 -5.2712 18 14 5.5817 11.2284 -4.2163 19 1 7.0618 11.3155 -4.3005 20 1 4.9791 11.8766 -5.4088 21 1 5.1143 11.9197 -2.9880 22 6 4.4652 6.8804 -1.4355 23 6 1.8772 3.5097 -0.0010 24 7 1.3186 2.3140 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.0229 0.3694 -0.0005 29 1 5.1255 2.5946 -0.0059 30 1 3.2186 5.7205 0.5108 31 1 4.8376 4.9807 0.5106 32 1 6.0457 4.7576 -1.6063 33 1 4.7723 3.5757 -1.9926 34 1 4.1755 4.8702 -4.0166 35 1 5.8937 4.4041 -4.0508 36 1 5.5609 6.7931 -4.7009 37 1 6.5356 6.6371 -3.2190 38 1 4.9084 9.2330 -6.1256 39 1 3.7293 7.4753 -0.8945 40 1 5.4443 7.0059 -0.9732 41 1 1.2519 4.3903 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595617132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:42 Heat of formation + Delta-G solvation = -5.982741 kcal Electronic energy + Delta-G solvation = -21274.569854 eV Core-core repulsion = 18154.410743 eV Total energy + Delta-G solvation = -3120.159111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.67920 -38.60290 -37.58437 -34.16065 -32.52342 -32.02628 -30.50983 -29.71978 -27.59575 -25.60950 -24.97397 -23.52805 -22.50532 -21.64244 -20.85481 -18.64463 -18.39650 -17.07725 -16.42983 -16.06597 -15.42042 -15.09626 -14.57324 -14.47678 -14.43549 -13.82425 -13.52955 -13.37833 -13.21362 -12.91743 -12.51353 -12.25553 -12.08589 -11.87259 -11.55565 -11.29109 -11.14078 -10.94789 -10.68300 -10.66543 -10.16560 -9.86808 -9.77358 -9.65521 -9.45536 -9.07515 -8.70676 -8.40059 -8.30063 -7.68509 -5.97167 -4.03534 1.16487 1.25489 3.02583 3.30729 3.37802 3.40489 3.73360 4.32208 4.41509 4.63043 4.84702 4.95447 5.00987 5.08680 5.18643 5.23684 5.32935 5.44655 5.50965 5.65856 5.74285 5.82832 5.86317 5.95303 6.06905 6.24262 6.31377 6.39389 6.42760 6.50070 6.71381 6.74752 6.95651 7.17136 7.21800 7.38817 7.64050 7.74334 7.79324 7.85105 8.08470 8.17739 8.47859 9.00627 9.60826 11.08781 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.037911 B = 0.003453 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.400098 B = 8106.859687 C = 8162.860250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.313 6.313 3 C 0.310 3.690 4 C -0.191 4.191 5 C -0.037 4.037 6 C -0.153 4.153 7 C 0.099 3.901 8 N -0.534 5.534 9 C 0.060 3.940 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.055 3.945 13 H 0.034 0.966 14 C -0.515 4.515 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.068 3.932 23 C 0.158 3.842 24 N -0.541 5.541 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.022 0.978 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.259 0.741 39 H 0.060 0.940 40 H 0.020 0.980 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 -14.539 10.541 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.220 6.220 3 C 0.131 3.869 4 C -0.212 4.212 5 C -0.063 4.063 6 C -0.155 4.155 7 C -0.029 4.029 8 N -0.258 5.258 9 C -0.067 4.067 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.059 4.059 23 C 0.002 3.998 24 N -0.264 5.264 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.982 -14.898 10.097 18.674 hybrid contribution 1.754 1.205 0.267 2.145 sum -3.228 -13.693 10.363 17.473 Atomic orbital electron populations 1.22815 0.77456 1.02615 1.02504 1.86210 1.22768 1.24863 1.88161 1.19816 0.89392 0.84697 0.92992 1.20983 0.91983 0.99319 1.08908 1.21348 1.00399 0.90927 0.93613 1.20710 0.94821 0.96227 1.03782 1.20886 0.98793 0.91781 0.91481 1.62051 1.46967 1.04474 1.12316 1.22098 0.92386 0.96181 0.96074 1.21668 1.00719 0.99330 0.93764 1.21654 0.97930 0.90789 1.04490 1.18661 0.96031 0.93450 0.88202 0.94740 1.21144 1.46244 0.95630 0.92371 0.92837 1.24934 0.95324 0.97818 0.95766 1.69889 1.49225 1.36138 0.97406 0.86633 0.78623 0.85403 0.77537 1.20815 1.21262 1.19960 1.22339 0.97191 0.84858 1.01478 1.22297 0.92354 0.93313 0.91812 1.67334 1.40868 0.98818 1.19339 0.92437 0.92269 0.88905 0.84424 0.84479 0.89931 0.94444 0.95934 0.92301 0.92182 0.93611 0.89154 0.95174 0.93057 0.92115 0.96203 0.82198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -3.87 10.48 -18.75 -0.20 -4.07 16 3 C 0.31 4.17 7.49 -17.12 -0.13 4.04 16 4 C -0.19 -2.30 10.04 -39.28 -0.39 -2.69 16 5 C -0.04 -0.44 8.04 -39.31 -0.32 -0.76 16 6 C -0.15 -2.02 4.89 -104.47 -0.51 -2.53 16 7 C 0.10 1.39 5.14 -4.97 -0.03 1.37 16 8 N -0.53 -9.45 4.65 -236.10 -1.10 -10.55 16 9 C 0.06 1.04 5.18 -3.83 -0.02 1.02 16 10 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 11 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 12 C 0.06 1.36 2.26 -91.69 -0.21 1.16 16 13 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.52 -13.94 8.56 -34.44 -0.29 -14.23 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.23 11.36 55.43 0.63 -24.60 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.07 1.39 4.68 -3.83 -0.02 1.37 16 23 C 0.16 2.13 10.85 -17.56 -0.19 1.94 16 24 N -0.54 -7.58 9.22 -13.33 -0.12 -7.70 16 25 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 26 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.14 1.40 7.98 -52.49 -0.42 0.98 16 30 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 31 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.92 5.76 -51.93 -0.30 0.62 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 37 H 0.03 0.70 8.14 -51.94 -0.42 0.28 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 39 H 0.06 1.21 8.02 -51.93 -0.42 0.80 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -29.39 329.81 -8.76 -38.15 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.47 Total: -0.85 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.45 Total: -11.43 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.59 Total: -42.86 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.20 Total: -4.07 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.39 -8.76 -38.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.170 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds