Wall clock time and date at job start Mon Mar 30 2020 01:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35682 * 117.00164 * 2 1 4 4 C 1.38918 * 119.68399 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11367 * 179.97438 * 4 3 2 6 6 C 1.38835 * 118.47905 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.35239 * 180.02562 * 6 5 4 8 8 N 1.46906 * 109.46645 * 90.00358 * 7 6 5 9 9 C 1.46850 * 111.00027 * 294.20772 * 8 7 6 10 10 C 1.53042 * 109.51963 * 174.16136 * 9 8 7 11 11 C 1.53121 * 109.27653 * 59.18633 * 10 9 8 12 12 C 1.53123 * 109.15815 * 302.33637 * 11 10 9 13 13 H 1.08993 * 109.54300 * 297.70073 * 12 11 10 14 14 C 1.50701 * 109.50134 * 177.59616 * 12 11 10 15 15 H 1.08002 * 120.00069 * 240.19480 * 14 12 11 16 16 C 1.37878 * 119.99533 * 60.20455 * 14 12 11 17 17 N 1.31506 * 120.00319 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99445 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47034 * 90.00064 * 18 16 14 20 20 H 1.48500 * 109.47092 * 209.99612 * 18 16 14 21 21 H 1.48498 * 109.47717 * 329.99884 * 18 16 14 22 22 C 1.46856 * 110.99746 * 170.00160 * 8 7 6 23 23 C 1.38040 * 119.29432 * 0.02562 * 6 5 4 24 24 N 1.31976 * 120.83318 * 359.97438 * 23 6 5 25 25 H 1.08997 * 109.47251 * 300.00706 * 1 2 3 26 26 H 1.08997 * 109.46674 * 60.00490 * 1 2 3 27 27 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.44387 * 359.97438 * 4 3 2 29 29 H 1.07991 * 120.75997 * 180.27321 * 5 4 3 30 30 H 1.08999 * 109.47462 * 210.00262 * 7 6 5 31 31 H 1.09000 * 109.47078 * 330.00933 * 7 6 5 32 32 H 1.09000 * 109.46660 * 294.17588 * 9 8 7 33 33 H 1.08996 * 109.45790 * 54.14780 * 9 8 7 34 34 H 1.08995 * 109.50359 * 299.23884 * 10 9 8 35 35 H 1.09001 * 109.50061 * 179.12160 * 10 9 8 36 36 H 1.09001 * 109.51871 * 182.44196 * 11 10 9 37 37 H 1.08989 * 109.57961 * 62.27766 * 11 10 9 38 38 H 0.96999 * 119.99959 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.46069 * 305.85742 * 22 8 7 40 40 H 1.08997 * 109.45964 * 65.82277 * 22 8 7 41 41 H 1.08000 * 119.58580 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0486 2.5131 -0.0011 6 6 3.2505 3.6491 -0.0016 7 6 3.8769 5.0198 -0.0028 8 7 4.0798 5.4641 -1.3882 9 6 5.0694 4.6214 -2.0716 10 6 5.1479 5.0192 -3.5473 11 6 5.5460 6.4940 -3.6528 12 6 4.5257 7.3456 -2.8922 13 1 3.5434 7.2339 -3.3510 14 6 4.9423 8.7930 -2.9412 15 1 5.1438 9.3283 -2.0250 16 6 5.0660 9.4340 -4.1557 17 7 4.8210 8.7822 -5.2712 18 14 5.5817 11.2284 -4.2163 19 1 7.0618 11.3155 -4.3005 20 1 4.9791 11.8766 -5.4088 21 1 5.1143 11.9197 -2.9880 22 6 4.4652 6.8804 -1.4355 23 6 1.8772 3.5097 -0.0010 24 7 1.3186 2.3140 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.0229 0.3694 -0.0005 29 1 5.1255 2.5946 -0.0059 30 1 3.2186 5.7205 0.5108 31 1 4.8376 4.9807 0.5106 32 1 6.0457 4.7576 -1.6063 33 1 4.7723 3.5757 -1.9926 34 1 4.1755 4.8702 -4.0166 35 1 5.8937 4.4041 -4.0508 36 1 5.5609 6.7931 -4.7009 37 1 6.5356 6.6371 -3.2190 38 1 4.9084 9.2330 -6.1256 39 1 3.7293 7.4753 -0.8945 40 1 5.4443 7.0059 -0.9732 41 1 1.2519 4.3903 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595617132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:41 Heat of formation + Delta-G solvation = -25.257396 kcal Electronic energy + Delta-G solvation = -21275.405666 eV Core-core repulsion = 18154.410743 eV Total energy + Delta-G solvation = -3120.994922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64517 -39.90442 -38.73183 -35.79480 -34.02980 -33.22368 -31.84074 -31.39300 -28.46533 -26.90987 -26.77741 -24.55305 -23.83952 -23.18119 -22.19076 -20.33425 -19.33347 -18.41460 -18.02809 -17.01398 -16.86893 -16.38206 -16.24102 -15.56203 -15.44419 -15.08393 -14.91133 -14.79549 -14.45913 -14.20569 -14.05849 -13.80739 -13.38611 -13.03998 -12.83049 -12.73404 -12.67252 -12.52547 -12.23179 -12.07844 -11.82147 -11.69265 -11.37826 -10.88000 -10.80912 -10.64195 -10.58184 -10.34686 -9.40867 -9.05552 -8.05941 -6.20017 0.19304 0.29950 1.42474 1.43428 1.53371 2.17633 2.44181 2.71866 3.21290 3.30482 3.39706 3.83134 3.99145 4.07525 4.20329 4.25109 4.28695 4.44357 4.45599 4.48314 4.55779 4.65437 4.71879 4.77233 4.81225 4.87133 4.92319 4.98097 5.02823 5.12496 5.21066 5.33557 5.42065 5.49472 5.55008 5.65821 5.98969 6.15132 6.23395 6.25935 6.37125 6.48477 6.87581 6.93682 7.48050 8.98614 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.037911 B = 0.003453 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.400098 B = 8106.859687 C = 8162.860250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.295 3.705 4 C -0.191 4.191 5 C -0.034 4.034 6 C -0.160 4.160 7 C 0.104 3.896 8 N -0.546 5.546 9 C 0.067 3.933 10 C -0.111 4.111 11 C -0.103 4.103 12 C 0.052 3.948 13 H -0.006 1.006 14 C -0.534 4.534 15 H 0.054 0.946 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 0.953 3.047 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.083 3.917 23 C 0.146 3.854 24 N -0.557 5.557 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.123 0.877 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.025 0.975 38 H 0.259 0.741 39 H 0.062 0.938 40 H 0.021 0.979 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 -15.563 11.948 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.116 3.884 4 C -0.211 4.211 5 C -0.059 4.059 6 C -0.162 4.162 7 C -0.024 4.024 8 N -0.270 5.270 9 C -0.061 4.061 10 C -0.149 4.149 11 C -0.142 4.142 12 C 0.034 3.966 13 H 0.012 0.988 14 C -0.572 4.572 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.779 3.221 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.045 4.045 23 C -0.009 4.009 24 N -0.281 5.281 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.178 0.822 29 H 0.178 0.822 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.235 -15.936 11.523 20.116 hybrid contribution 1.455 1.458 -0.173 2.067 sum -2.780 -14.477 11.350 18.605 Atomic orbital electron populations 1.23010 0.76146 1.04505 1.02011 1.86204 1.24136 1.24474 1.88034 1.20175 0.90249 0.84847 0.93117 1.21275 0.91615 1.00298 1.07898 1.21608 1.01432 0.90368 0.92529 1.20642 0.94760 0.96131 1.04708 1.20891 0.99832 0.92438 0.89230 1.61939 1.47095 1.02964 1.15049 1.22046 0.92951 0.97090 0.93993 1.21581 1.00299 0.96846 0.96194 1.21456 0.97359 0.93430 1.01921 1.18584 0.93994 0.93070 0.90995 0.98771 1.21545 1.46078 0.97156 0.92469 0.92781 1.25727 0.95448 1.01937 0.95500 1.70043 1.50103 1.37677 0.97804 0.85630 0.78335 0.80487 0.77628 1.20208 1.21159 1.19138 1.21985 0.97346 0.86885 0.98253 1.22471 0.92894 0.93479 0.92068 1.67321 1.41507 0.99201 1.20034 0.92571 0.93093 0.85878 0.82198 0.82232 0.89175 0.92888 0.94871 0.90018 0.93825 0.91462 0.92701 0.95624 0.93180 0.91992 0.96104 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.84 16 2 O -0.32 -7.44 10.48 -90.00 -0.94 -8.38 16 3 C 0.29 7.45 7.49 84.79 0.63 8.08 16 4 C -0.19 -4.06 10.04 22.47 0.23 -3.83 16 5 C -0.03 -0.70 8.04 22.45 0.18 -0.52 16 6 C -0.16 -3.86 4.89 -19.77 -0.10 -3.95 16 7 C 0.10 2.67 5.14 85.56 0.44 3.11 16 8 N -0.55 -18.51 4.65 -900.88 -4.19 -22.70 16 9 C 0.07 2.15 5.18 86.33 0.45 2.60 16 10 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 11 C -0.10 -4.94 5.03 30.68 0.15 -4.78 16 12 C 0.05 2.64 2.26 -11.49 -0.03 2.61 16 13 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 14 C -0.53 -29.34 8.56 25.60 0.22 -29.12 16 15 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 16 C 0.01 0.69 5.30 84.66 0.45 1.14 16 17 N -0.92 -53.56 11.36 21.45 0.24 -53.32 16 18 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 C 0.08 3.34 4.68 86.32 0.40 3.74 16 23 C 0.15 3.76 10.85 84.62 0.92 4.68 16 24 N -0.56 -15.06 9.22 -308.95 -2.85 -17.91 16 25 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 26 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 27 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.16 2.57 7.98 -2.92 -0.02 2.55 16 30 H 0.09 2.18 7.94 -2.39 -0.02 2.16 16 31 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 2.29 5.76 -2.39 -0.01 2.27 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.05 3.00 6.16 -2.39 -0.01 2.98 16 37 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 39 H 0.06 2.45 8.02 -2.39 -0.02 2.43 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.17 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -64.21 329.81 0.60 -63.60 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.00 Total: 11.57 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 5.31 Total: -18.50 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -6.79 Total: -93.92 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.94 Total: -8.38 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -64.21 0.60 -63.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.345 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds