Wall clock time and date at job start Mon Mar 30 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35740 * 116.99832 * 2 1 4 4 C 1.39282 * 120.84657 * 0.02562 * 3 2 1 5 5 C 1.37950 * 119.09252 * 179.97438 * 4 3 2 6 6 N 1.31984 * 120.82333 * 359.97438 * 5 4 3 7 7 C 1.31944 * 121.86365 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.58804 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47143 * 274.99794 * 8 7 6 10 10 C 1.46839 * 111.00391 * 294.20970 * 9 8 7 11 11 C 1.53037 * 109.52405 * 174.16003 * 10 9 8 12 12 C 1.53118 * 109.28136 * 59.18409 * 11 10 9 13 13 C 1.53119 * 109.15388 * 302.34536 * 12 11 10 14 14 H 1.09000 * 109.54117 * 297.68798 * 13 12 11 15 15 C 1.50701 * 109.50210 * 177.59500 * 13 12 11 16 16 H 1.08001 * 120.00130 * 240.20108 * 15 13 12 17 17 C 1.37881 * 119.99784 * 60.19193 * 15 13 12 18 18 N 1.31511 * 120.00145 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99795 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47356 * 60.00064 * 19 17 15 21 21 H 1.48505 * 109.46813 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47153 * 299.99955 * 19 17 15 23 23 C 1.46854 * 111.00106 * 170.00052 * 9 8 7 24 24 C 1.37990 * 120.82304 * 359.97438 * 7 6 5 25 25 H 1.08999 * 109.47053 * 300.00036 * 1 2 3 26 26 H 1.08994 * 109.47093 * 60.00118 * 1 2 3 27 27 H 1.09001 * 109.47120 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.45828 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.58998 * 180.27841 * 5 4 3 30 30 H 1.08997 * 109.47347 * 35.00236 * 8 7 6 31 31 H 1.09004 * 109.47471 * 155.00412 * 8 7 6 32 32 H 1.09004 * 109.46722 * 294.17716 * 10 9 8 33 33 H 1.09001 * 109.46032 * 54.14384 * 10 9 8 34 34 H 1.09003 * 109.50355 * 299.23686 * 11 10 9 35 35 H 1.09006 * 109.50273 * 179.12481 * 11 10 9 36 36 H 1.09000 * 109.52414 * 182.44059 * 12 11 10 37 37 H 1.08993 * 109.57365 * 62.27834 * 12 11 10 38 38 H 0.97005 * 120.00050 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.46132 * 305.85772 * 23 9 8 40 40 H 1.08993 * 109.46076 * 65.82261 * 23 9 8 41 41 H 1.08003 * 120.45676 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2865 3.6458 0.0016 7 6 4.0230 2.5511 0.0011 8 6 5.5256 2.6653 0.0011 9 7 6.0047 2.8233 -1.3786 10 6 5.7411 1.6142 -2.1690 11 6 6.1188 1.8661 -3.6305 12 6 7.6017 2.2386 -3.7125 13 6 7.8587 3.4720 -2.8422 14 1 7.2838 4.3149 -3.2256 15 6 9.3270 3.8104 -2.8703 16 1 9.8983 3.8124 -1.9538 17 6 9.9410 4.1172 -4.0661 18 7 9.2452 4.1151 -5.1821 19 14 11.7612 4.5359 -4.1010 20 1 12.5437 3.3862 -3.5806 21 1 12.1756 4.8261 -5.4972 22 1 12.0109 5.7291 -3.2530 23 6 7.4307 3.1735 -1.4037 24 6 3.4346 1.3029 0.0006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2245 2.3567 0.0005 29 1 1.4007 4.5173 0.0060 30 1 5.8242 3.5319 0.5909 31 1 5.9586 1.7639 0.4350 32 1 6.3346 0.7878 -1.7778 33 1 4.6824 1.3626 -2.1056 34 1 5.5158 2.6833 -4.0265 35 1 5.9375 0.9634 -4.2140 36 1 7.8647 2.4612 -4.7466 37 1 8.2075 1.4068 -3.3534 38 1 9.6771 4.3313 -6.0234 39 1 7.5992 4.0546 -0.7844 40 1 8.0162 2.3400 -1.0160 41 1 4.0432 0.4107 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595617328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:34 Heat of formation + Delta-G solvation = -4.112402 kcal Electronic energy + Delta-G solvation = -21354.910932 eV Core-core repulsion = 18234.832925 eV Total energy + Delta-G solvation = -3120.078007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73265 -38.71921 -37.76891 -34.03498 -32.21709 -31.59783 -30.76793 -29.71926 -27.93845 -26.05988 -24.89496 -23.49322 -22.46433 -21.61159 -20.80108 -18.55426 -18.05043 -17.03661 -16.35791 -16.09176 -15.80664 -15.11602 -15.01104 -14.65110 -14.26524 -13.86113 -13.67122 -13.42077 -13.17601 -12.94229 -12.50080 -12.25088 -11.99480 -11.79719 -11.73388 -11.30948 -11.21631 -10.89129 -10.65508 -10.62437 -10.08365 -9.79408 -9.46835 -9.39789 -9.15404 -8.96810 -8.90430 -8.65615 -8.25008 -7.62146 -5.92277 -3.98396 1.05438 1.33348 2.89571 3.35970 3.40489 3.42919 3.74298 4.32758 4.46371 4.51257 4.70439 4.78090 4.80148 4.83429 5.10721 5.16149 5.21735 5.37677 5.48163 5.68337 5.72414 5.78817 5.88912 5.94336 6.04738 6.14316 6.30946 6.44827 6.48052 6.56859 6.76641 6.80062 7.01570 7.02923 7.27357 7.43898 7.69680 7.79246 7.84421 8.13850 8.14671 8.23039 8.53147 9.05533 9.65495 11.13746 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.038624 B = 0.003605 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.766014 B = 7765.466670 C = 8020.167722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.164 3.836 4 C -0.271 4.271 5 C 0.138 3.862 6 N -0.486 5.486 7 C 0.186 3.814 8 C 0.100 3.900 9 N -0.528 5.528 10 C 0.059 3.941 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.056 3.944 14 H 0.035 0.965 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.069 3.931 24 C -0.201 4.201 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.024 0.976 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.124 -7.060 10.200 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.111 3.889 4 C -0.292 4.292 5 C -0.020 4.020 6 N -0.198 5.198 7 C 0.049 3.951 8 C -0.028 4.028 9 N -0.252 5.252 10 C -0.069 4.069 11 C -0.154 4.154 12 C -0.148 4.148 13 C 0.037 3.963 14 H 0.053 0.947 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.057 4.057 24 C -0.222 4.222 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.153 0.847 29 H 0.174 0.826 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.861 -6.066 9.790 20.419 hybrid contribution 0.579 -1.225 0.246 1.377 sum -16.282 -7.291 10.036 20.469 Atomic orbital electron populations 1.23102 0.78013 1.04146 1.01591 1.86064 1.21716 1.26575 1.88064 1.19279 0.92327 0.84441 0.92824 1.22159 1.01212 0.93420 1.12404 1.22589 0.90285 0.96822 0.92284 1.67598 1.06450 1.31940 1.13856 1.21069 0.96613 0.86969 0.90493 1.20969 0.87607 1.01670 0.92584 1.61949 1.20111 1.34756 1.08420 1.22122 0.99025 0.90296 0.95453 1.21662 1.00261 0.99890 0.93582 1.21651 0.90770 0.97899 1.04499 1.18658 0.95313 0.94354 0.87999 0.94664 1.21114 0.94290 1.46621 0.93308 0.92852 1.24933 0.97805 0.95383 0.95715 1.69887 1.35672 1.48954 0.98211 0.86689 0.85702 0.78865 0.76888 1.20411 1.21369 1.20303 1.22343 0.83375 0.98303 1.01690 1.21348 0.91903 0.99884 1.09106 0.92485 0.92356 0.88033 0.84705 0.82620 0.88914 0.93652 0.95777 0.92450 0.92192 0.93610 0.89152 0.95136 0.93041 0.91954 0.96134 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.84 101.05 0.99 1.17 16 2 O -0.31 -3.48 10.51 -18.93 -0.20 -3.68 16 3 C 0.16 2.05 6.74 -38.82 -0.26 1.79 16 4 C -0.27 -2.96 9.11 -39.30 -0.36 -3.32 16 5 C 0.14 1.70 11.17 -17.59 -0.20 1.50 16 6 N -0.49 -7.62 10.27 -9.55 -0.10 -7.72 16 7 C 0.19 2.86 5.64 -82.64 -0.47 2.39 16 8 C 0.10 1.61 5.29 -4.98 -0.03 1.59 16 9 N -0.53 -10.20 4.65 -236.12 -1.10 -11.30 16 10 C 0.06 1.09 5.20 -3.84 -0.02 1.07 16 11 C -0.12 -2.37 6.09 -26.65 -0.16 -2.54 16 12 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 13 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 14 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 15 C -0.51 -14.25 8.56 -34.44 -0.29 -14.55 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.68 11.36 55.43 0.63 -25.05 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.07 1.50 4.68 -3.83 -0.02 1.48 16 24 C -0.20 -2.78 8.17 -39.30 -0.32 -3.10 16 25 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 26 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.14 1.04 6.47 -52.49 -0.34 0.71 16 29 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.09 1.47 7.99 -51.93 -0.41 1.06 16 31 H 0.05 0.66 8.02 -51.93 -0.42 0.24 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.99 6.05 -51.93 -0.31 0.68 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.06 1.33 8.02 -51.93 -0.42 0.91 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -30.91 328.02 -8.78 -39.69 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.37 Total: -0.89 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.57 Total: -12.43 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.57 Total: -44.07 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.20 Total: -3.68 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.91 -8.78 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.574 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds