Wall clock time and date at job start Mon Mar 30 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35740 * 116.99832 * 2 1 4 4 C 1.39282 * 120.84657 * 0.02562 * 3 2 1 5 5 C 1.37950 * 119.09252 * 179.97438 * 4 3 2 6 6 N 1.31984 * 120.82333 * 359.97438 * 5 4 3 7 7 C 1.31944 * 121.86365 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.58804 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47143 * 274.99794 * 8 7 6 10 10 C 1.46839 * 111.00391 * 294.20970 * 9 8 7 11 11 C 1.53037 * 109.52405 * 174.16003 * 10 9 8 12 12 C 1.53118 * 109.28136 * 59.18409 * 11 10 9 13 13 C 1.53119 * 109.15388 * 302.34536 * 12 11 10 14 14 H 1.09000 * 109.54117 * 297.68798 * 13 12 11 15 15 C 1.50701 * 109.50210 * 177.59500 * 13 12 11 16 16 H 1.08001 * 120.00130 * 240.20108 * 15 13 12 17 17 C 1.37881 * 119.99784 * 60.19193 * 15 13 12 18 18 N 1.31511 * 120.00145 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99795 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47356 * 60.00064 * 19 17 15 21 21 H 1.48505 * 109.46813 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47153 * 299.99955 * 19 17 15 23 23 C 1.46854 * 111.00106 * 170.00052 * 9 8 7 24 24 C 1.37990 * 120.82304 * 359.97438 * 7 6 5 25 25 H 1.08999 * 109.47053 * 300.00036 * 1 2 3 26 26 H 1.08994 * 109.47093 * 60.00118 * 1 2 3 27 27 H 1.09001 * 109.47120 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.45828 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.58998 * 180.27841 * 5 4 3 30 30 H 1.08997 * 109.47347 * 35.00236 * 8 7 6 31 31 H 1.09004 * 109.47471 * 155.00412 * 8 7 6 32 32 H 1.09004 * 109.46722 * 294.17716 * 10 9 8 33 33 H 1.09001 * 109.46032 * 54.14384 * 10 9 8 34 34 H 1.09003 * 109.50355 * 299.23686 * 11 10 9 35 35 H 1.09006 * 109.50273 * 179.12481 * 11 10 9 36 36 H 1.09000 * 109.52414 * 182.44059 * 12 11 10 37 37 H 1.08993 * 109.57365 * 62.27834 * 12 11 10 38 38 H 0.97005 * 120.00050 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.46132 * 305.85772 * 23 9 8 40 40 H 1.08993 * 109.46076 * 65.82261 * 23 9 8 41 41 H 1.08003 * 120.45676 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2865 3.6458 0.0016 7 6 4.0230 2.5511 0.0011 8 6 5.5256 2.6653 0.0011 9 7 6.0047 2.8233 -1.3786 10 6 5.7411 1.6142 -2.1690 11 6 6.1188 1.8661 -3.6305 12 6 7.6017 2.2386 -3.7125 13 6 7.8587 3.4720 -2.8422 14 1 7.2838 4.3149 -3.2256 15 6 9.3270 3.8104 -2.8703 16 1 9.8983 3.8124 -1.9538 17 6 9.9410 4.1172 -4.0661 18 7 9.2452 4.1151 -5.1821 19 14 11.7612 4.5359 -4.1010 20 1 12.5437 3.3862 -3.5806 21 1 12.1756 4.8261 -5.4972 22 1 12.0109 5.7291 -3.2530 23 6 7.4307 3.1735 -1.4037 24 6 3.4346 1.3029 0.0006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2245 2.3567 0.0005 29 1 1.4007 4.5173 0.0060 30 1 5.8242 3.5319 0.5909 31 1 5.9586 1.7639 0.4350 32 1 6.3346 0.7878 -1.7778 33 1 4.6824 1.3626 -2.1056 34 1 5.5158 2.6833 -4.0265 35 1 5.9375 0.9634 -4.2140 36 1 7.8647 2.4612 -4.7466 37 1 8.2075 1.4068 -3.3534 38 1 9.6771 4.3313 -6.0234 39 1 7.5992 4.0546 -0.7844 40 1 8.0162 2.3400 -1.0160 41 1 4.0432 0.4107 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595617328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:34 Heat of formation + Delta-G solvation = -24.304444 kcal Electronic energy + Delta-G solvation = -21355.786525 eV Core-core repulsion = 18234.832925 eV Total energy + Delta-G solvation = -3120.953599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.67245 -39.93761 -39.02816 -35.77483 -33.92337 -32.56126 -32.08348 -31.52193 -28.67910 -27.24957 -26.90226 -24.45277 -23.92474 -23.27444 -22.09306 -20.35941 -18.95607 -18.37611 -17.95020 -16.97887 -16.78641 -16.61298 -16.37936 -15.92090 -15.73698 -15.09970 -14.95043 -14.72208 -14.56359 -14.35860 -14.08226 -13.78939 -13.40981 -13.02870 -12.83959 -12.76336 -12.53889 -12.48058 -12.42699 -12.12394 -11.86451 -11.72177 -11.38456 -10.90821 -10.66697 -10.43357 -10.35608 -10.06509 -9.84454 -9.12887 -8.05708 -6.20077 0.08218 0.38433 1.43263 1.45055 1.52471 2.16290 2.44434 2.70092 3.21206 3.27115 3.35562 3.70334 3.92976 4.11582 4.16360 4.21420 4.25986 4.35942 4.38289 4.39751 4.47983 4.61063 4.63229 4.70978 4.74745 4.80943 4.88207 4.93834 4.97929 5.06789 5.09681 5.18611 5.37621 5.51853 5.54921 5.65039 5.96362 6.13316 6.21275 6.23773 6.29990 6.46688 6.92428 7.14959 7.47658 8.99044 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.038624 B = 0.003605 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.766014 B = 7765.466670 C = 8020.167722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.161 3.839 4 C -0.257 4.257 5 C 0.128 3.872 6 N -0.523 5.523 7 C 0.167 3.833 8 C 0.103 3.897 9 N -0.542 5.542 10 C 0.067 3.933 11 C -0.109 4.109 12 C -0.102 4.102 13 C 0.054 3.946 14 H -0.007 1.007 15 C -0.536 4.536 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.956 3.044 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.084 3.916 24 C -0.211 4.211 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.122 0.878 28 H 0.171 0.829 29 H 0.183 0.817 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.024 0.976 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.642 -8.152 11.298 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.107 3.893 4 C -0.278 4.278 5 C -0.029 4.029 6 N -0.236 5.236 7 C 0.031 3.969 8 C -0.025 4.025 9 N -0.267 5.267 10 C -0.061 4.061 11 C -0.147 4.147 12 C -0.140 4.140 13 C 0.035 3.965 14 H 0.011 0.989 15 C -0.575 4.575 16 H 0.072 0.928 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.781 3.219 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.044 4.044 24 C -0.232 4.232 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.140 0.860 28 H 0.188 0.812 29 H 0.200 0.800 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.401 -7.169 10.905 22.559 hybrid contribution 0.893 -0.902 -0.083 1.272 sum -17.508 -8.071 10.822 22.109 Atomic orbital electron populations 1.23459 0.75622 1.06031 1.02777 1.86056 1.24172 1.25934 1.87727 1.19391 0.92144 0.85508 0.92253 1.22487 1.02905 0.92234 1.10168 1.23094 0.89443 0.98655 0.91689 1.67532 1.08240 1.32605 1.15224 1.20857 0.95927 0.87720 0.92443 1.20951 0.88816 1.02275 0.90422 1.61823 1.18285 1.35695 1.10893 1.22044 1.00162 0.90189 0.93660 1.21571 0.97124 1.00262 0.95768 1.21448 0.93400 0.97103 1.02065 1.18572 0.93909 0.93401 0.90637 0.98914 1.21501 0.95597 1.46856 0.93517 0.92753 1.25746 1.02249 0.95247 0.95347 1.70043 1.37385 1.49537 0.98649 0.85649 0.80367 0.78869 0.76972 1.19514 1.21033 1.19687 1.22002 0.85197 0.98362 0.98800 1.21381 0.93026 0.99360 1.09426 0.90966 0.91379 0.86021 0.81197 0.79972 0.89378 0.91930 0.94736 0.90704 0.93848 0.91220 0.92410 0.95412 0.93102 0.92276 0.95779 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.26 16 2 O -0.33 -6.39 10.51 -90.64 -0.95 -7.34 16 3 C 0.16 3.62 6.74 22.77 0.15 3.77 16 4 C -0.26 -4.85 9.11 22.45 0.20 -4.64 16 5 C 0.13 2.89 11.17 84.60 0.95 3.84 16 6 N -0.52 -15.94 10.27 -184.13 -1.89 -17.83 16 7 C 0.17 5.00 5.64 42.48 0.24 5.24 16 8 C 0.10 3.27 5.29 85.55 0.45 3.73 16 9 N -0.54 -20.93 4.65 -900.95 -4.19 -25.12 16 10 C 0.07 2.41 5.20 86.33 0.45 2.86 16 11 C -0.11 -4.48 6.09 30.65 0.19 -4.29 16 12 C -0.10 -5.05 5.03 30.67 0.15 -4.90 16 13 C 0.05 2.83 2.26 -11.49 -0.03 2.81 16 14 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 15 C -0.54 -30.41 8.56 25.60 0.22 -30.19 16 16 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 17 C 0.01 0.72 5.30 84.66 0.45 1.17 16 18 N -0.92 -54.55 11.36 21.45 0.24 -54.30 16 19 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.08 3.67 4.68 86.32 0.40 4.07 16 24 C -0.21 -5.49 8.17 22.46 0.18 -5.30 16 25 H 0.07 0.50 7.71 -2.39 -0.02 0.48 16 26 H 0.07 0.54 7.71 -2.39 -0.02 0.53 16 27 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.17 1.89 6.47 -2.91 -0.02 1.87 16 29 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 30 H 0.09 2.82 7.99 -2.39 -0.02 2.80 16 31 H 0.06 1.74 8.02 -2.39 -0.02 1.73 16 32 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.07 2.46 6.05 -2.39 -0.01 2.45 16 34 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.06 3.23 6.17 -2.39 -0.01 3.22 16 37 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 39 H 0.06 2.58 8.02 -2.38 -0.02 2.56 16 40 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -68.48 328.02 1.37 -67.11 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.00 Total: 11.57 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 5.13 Total: -20.57 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -5.84 Total: -97.26 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.95 Total: -7.34 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.48 1.37 -67.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.803 kcal (2) G-P(sol) polarization free energy of solvation -68.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds