Wall clock time and date at job start Mon Mar 30 2020 01:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35736 * 116.99916 * 2 1 4 4 C 1.39282 * 120.84895 * 359.97239 * 3 2 1 5 5 C 1.37952 * 119.09287 * 180.02562 * 4 3 2 6 6 N 1.31969 * 120.82385 * 359.72464 * 5 4 3 7 7 C 1.31941 * 121.86173 * 0.56286 * 6 5 4 8 8 C 1.50706 * 119.58746 * 179.71267 * 7 6 5 9 9 N 1.46906 * 109.46929 * 274.73109 * 8 7 6 10 10 C 1.46844 * 110.99887 * 66.04691 * 9 8 7 11 11 C 1.53045 * 109.52143 * 185.83959 * 10 9 8 12 12 C 1.53120 * 109.27382 * 300.82250 * 11 10 9 13 13 C 1.53112 * 109.16707 * 57.65353 * 12 11 10 14 14 H 1.09007 * 109.49891 * 62.28504 * 13 12 11 15 15 C 1.50698 * 109.50763 * 182.36204 * 13 12 11 16 16 H 1.08005 * 120.00042 * 119.99912 * 15 13 12 17 17 C 1.37879 * 120.00027 * 300.00147 * 15 13 12 18 18 N 1.31516 * 119.99957 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00004 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47164 * 59.99976 * 19 17 15 21 21 H 1.48502 * 109.47163 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47263 * 299.99993 * 19 17 15 23 23 C 1.46853 * 110.99832 * 190.25815 * 9 8 7 24 24 C 1.37997 * 120.82570 * 359.43886 * 7 6 5 25 25 H 1.09000 * 109.47647 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47726 * 300.00553 * 1 2 3 27 27 H 1.09009 * 109.47007 * 60.00685 * 1 2 3 28 28 H 1.08005 * 120.45315 * 0.04114 * 4 3 2 29 29 H 1.08003 * 119.58289 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.46946 * 154.73335 * 8 7 6 31 31 H 1.09000 * 109.47319 * 34.73135 * 8 7 6 32 32 H 1.09000 * 109.46299 * 305.85220 * 10 9 8 33 33 H 1.08997 * 109.46352 * 65.82665 * 10 9 8 34 34 H 1.08996 * 109.50312 * 60.75518 * 11 10 9 35 35 H 1.08994 * 109.50179 * 180.87913 * 11 10 9 36 36 H 1.09001 * 109.51934 * 177.56230 * 12 11 10 37 37 H 1.08999 * 109.52540 * 297.68138 * 12 11 10 38 38 H 0.97003 * 119.99935 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.46125 * 294.17808 * 23 9 8 40 40 H 1.09003 * 109.46462 * 54.14202 * 23 9 8 41 41 H 1.07998 * 120.45208 * 180.24828 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3886 -0.0006 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 0.0044 7 6 4.0230 2.5510 -0.0004 8 6 5.5257 2.6652 -0.0003 9 7 6.0049 2.8220 -1.3801 10 6 5.5576 4.0990 -1.9506 11 6 5.9491 4.1640 -3.4287 12 6 7.4693 4.0316 -3.5551 13 6 7.9147 2.7162 -2.9105 14 1 7.4632 1.8789 -3.4428 15 6 9.4161 2.6052 -2.9791 16 1 9.9936 2.5232 -2.0701 17 6 10.0524 2.6083 -4.2022 18 7 9.3492 2.7087 -5.3091 19 14 11.9134 2.4715 -4.2873 20 1 12.3450 1.1957 -3.6616 21 1 12.3474 2.4987 -5.7072 22 1 12.5274 3.6118 -3.5605 23 6 7.4662 2.6932 -1.4475 24 6 3.4345 1.3028 0.0001 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2244 2.3566 -0.0004 29 1 1.4007 4.5173 -0.0020 30 1 5.9585 1.7642 0.4344 31 1 5.8242 3.5323 0.5888 32 1 4.4744 4.1786 -1.8580 33 1 6.0293 4.9218 -1.4135 34 1 5.4668 3.3495 -3.9690 35 1 5.6307 5.1185 -3.8478 36 1 7.7487 4.0339 -4.6087 37 1 7.9512 4.8680 -3.0488 38 1 9.7969 2.7113 -6.1696 39 1 7.9290 3.5225 -0.9127 40 1 7.7693 1.7516 -0.9895 41 1 4.0432 0.4107 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595617330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:37 Heat of formation + Delta-G solvation = -3.294056 kcal Electronic energy + Delta-G solvation = -21324.062314 eV Core-core repulsion = 18204.019793 eV Total energy + Delta-G solvation = -3120.042521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71098 -38.71637 -37.70041 -33.99238 -32.25732 -31.56046 -30.73451 -29.69575 -27.94309 -25.97946 -24.87462 -23.50626 -22.41597 -21.54976 -20.80210 -18.51698 -18.03625 -17.04550 -16.34281 -16.05944 -15.74917 -15.13196 -15.01659 -14.61843 -14.21239 -13.90753 -13.57757 -13.38264 -13.15310 -12.84444 -12.51454 -12.24604 -11.93734 -11.76011 -11.71234 -11.29010 -11.18947 -10.88835 -10.64613 -10.59647 -10.01426 -9.76248 -9.55394 -9.38221 -9.16834 -8.96164 -8.84058 -8.64414 -8.24483 -7.61272 -5.92252 -3.98562 1.08053 1.33678 2.93120 3.35746 3.40308 3.42672 3.73374 4.31105 4.47187 4.52841 4.77207 4.80289 4.82561 4.86614 5.14000 5.14554 5.23221 5.37572 5.52466 5.75333 5.79370 5.90606 5.95024 5.99037 6.09328 6.22795 6.38692 6.47390 6.52102 6.61273 6.83276 6.84939 7.02886 7.06320 7.29665 7.46268 7.72758 7.79866 7.86231 8.08264 8.14615 8.23889 8.53465 9.05362 9.65343 11.13577 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031748 B = 0.003653 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.727273 B = 7662.152898 C = 7897.603162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.164 3.836 4 C -0.270 4.270 5 C 0.135 3.865 6 N -0.501 5.501 7 C 0.183 3.817 8 C 0.100 3.900 9 N -0.532 5.532 10 C 0.063 3.937 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.056 3.944 14 H 0.034 0.966 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.068 3.932 24 C -0.185 4.185 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.135 0.865 29 H 0.155 0.845 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.260 0.740 39 H 0.021 0.979 40 H 0.060 0.940 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.613 -1.379 10.726 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.111 3.889 4 C -0.292 4.292 5 C -0.022 4.022 6 N -0.214 5.214 7 C 0.046 3.954 8 C -0.029 4.029 9 N -0.257 5.257 10 C -0.065 4.065 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.037 3.963 14 H 0.052 0.948 15 C -0.554 4.554 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.058 4.058 24 C -0.206 4.206 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.152 0.848 29 H 0.172 0.828 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.291 -1.179 10.253 20.137 hybrid contribution 0.516 -0.100 0.347 0.629 sum -16.775 -1.280 10.600 19.885 Atomic orbital electron populations 1.23100 0.78068 1.04161 1.01517 1.86076 1.21657 1.26544 1.87993 1.19323 0.92441 0.84414 0.92704 1.22132 1.01178 0.93410 1.12439 1.22501 0.90203 0.96805 0.92728 1.67596 1.06742 1.32142 1.14945 1.21060 0.96509 0.87180 0.90636 1.20981 0.87685 1.01950 0.92245 1.62033 1.13993 1.34380 1.15323 1.22090 0.99471 0.88930 0.95969 1.21685 0.99810 0.99731 0.94296 1.21651 0.90511 0.98408 1.04278 1.18651 0.94707 0.94472 0.88458 0.94788 1.21117 0.91666 1.50283 0.92291 0.92863 1.24934 0.97936 0.95184 0.95790 1.69890 1.35003 1.50399 0.97417 0.86689 0.86039 0.78575 0.76834 1.20313 1.21369 1.20403 1.22342 0.83152 0.98976 1.01363 1.21300 0.91678 1.00023 1.07570 0.88019 0.92534 0.92394 0.84757 0.82768 0.89384 0.93241 0.91407 0.95784 0.92418 0.93659 0.89192 0.95158 0.93046 0.96068 0.92148 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.18 16 2 O -0.31 -3.57 10.51 -18.92 -0.20 -3.77 16 3 C 0.16 2.08 6.74 -38.82 -0.26 1.82 16 4 C -0.27 -2.93 9.11 -39.30 -0.36 -3.29 16 5 C 0.14 1.61 11.17 -17.60 -0.20 1.41 16 6 N -0.50 -7.47 8.72 -9.55 -0.08 -7.55 16 7 C 0.18 2.78 5.69 -82.63 -0.47 2.31 16 8 C 0.10 1.60 5.28 -4.97 -0.03 1.58 16 9 N -0.53 -10.30 4.65 -236.10 -1.10 -11.39 16 10 C 0.06 1.22 5.25 -3.83 -0.02 1.20 16 11 C -0.12 -2.45 6.09 -26.65 -0.16 -2.61 16 12 C -0.11 -2.70 5.02 -26.61 -0.13 -2.83 16 13 C 0.06 1.43 2.26 -91.70 -0.21 1.22 16 14 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.51 -14.25 8.57 -34.44 -0.30 -14.55 16 16 H 0.05 1.44 7.75 -52.48 -0.41 1.04 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.66 11.35 55.43 0.63 -25.04 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C 0.07 1.47 4.68 -3.83 -0.02 1.45 16 24 C -0.18 -2.61 9.68 -39.30 -0.38 -2.99 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 27 H 0.06 0.35 7.71 -51.92 -0.40 -0.05 16 28 H 0.13 1.04 6.47 -52.48 -0.34 0.70 16 29 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.09 1.26 7.88 -51.93 -0.41 0.85 16 31 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.07 1.26 6.03 -51.93 -0.31 0.95 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 1.25 8.01 -51.93 -0.42 0.84 16 41 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -30.68 328.02 -8.82 -39.50 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.37 Total: -0.67 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.63 Total: -12.44 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.55 Total: -43.98 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.68 -8.82 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.208 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds