Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35736 * 116.99916 * 2 1 4 4 C 1.39282 * 120.84895 * 359.97239 * 3 2 1 5 5 C 1.37952 * 119.09287 * 180.02562 * 4 3 2 6 6 N 1.31969 * 120.82385 * 359.72464 * 5 4 3 7 7 C 1.31941 * 121.86173 * 0.56286 * 6 5 4 8 8 C 1.50706 * 119.58746 * 179.71267 * 7 6 5 9 9 N 1.46906 * 109.46929 * 274.73109 * 8 7 6 10 10 C 1.46844 * 110.99887 * 66.04691 * 9 8 7 11 11 C 1.53045 * 109.52143 * 185.83959 * 10 9 8 12 12 C 1.53120 * 109.27382 * 300.82250 * 11 10 9 13 13 C 1.53112 * 109.16707 * 57.65353 * 12 11 10 14 14 H 1.09007 * 109.49891 * 62.28504 * 13 12 11 15 15 C 1.50698 * 109.50763 * 182.36204 * 13 12 11 16 16 H 1.08005 * 120.00042 * 119.99912 * 15 13 12 17 17 C 1.37879 * 120.00027 * 300.00147 * 15 13 12 18 18 N 1.31516 * 119.99957 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00004 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47164 * 59.99976 * 19 17 15 21 21 H 1.48502 * 109.47163 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47263 * 299.99993 * 19 17 15 23 23 C 1.46853 * 110.99832 * 190.25815 * 9 8 7 24 24 C 1.37997 * 120.82570 * 359.43886 * 7 6 5 25 25 H 1.09000 * 109.47647 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47726 * 300.00553 * 1 2 3 27 27 H 1.09009 * 109.47007 * 60.00685 * 1 2 3 28 28 H 1.08005 * 120.45315 * 0.04114 * 4 3 2 29 29 H 1.08003 * 119.58289 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.46946 * 154.73335 * 8 7 6 31 31 H 1.09000 * 109.47319 * 34.73135 * 8 7 6 32 32 H 1.09000 * 109.46299 * 305.85220 * 10 9 8 33 33 H 1.08997 * 109.46352 * 65.82665 * 10 9 8 34 34 H 1.08996 * 109.50312 * 60.75518 * 11 10 9 35 35 H 1.08994 * 109.50179 * 180.87913 * 11 10 9 36 36 H 1.09001 * 109.51934 * 177.56230 * 12 11 10 37 37 H 1.08999 * 109.52540 * 297.68138 * 12 11 10 38 38 H 0.97003 * 119.99935 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.46125 * 294.17808 * 23 9 8 40 40 H 1.09003 * 109.46462 * 54.14202 * 23 9 8 41 41 H 1.07998 * 120.45208 * 180.24828 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3886 -0.0006 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 0.0044 7 6 4.0230 2.5510 -0.0004 8 6 5.5257 2.6652 -0.0003 9 7 6.0049 2.8220 -1.3801 10 6 5.5576 4.0990 -1.9506 11 6 5.9491 4.1640 -3.4287 12 6 7.4693 4.0316 -3.5551 13 6 7.9147 2.7162 -2.9105 14 1 7.4632 1.8789 -3.4428 15 6 9.4161 2.6052 -2.9791 16 1 9.9936 2.5232 -2.0701 17 6 10.0524 2.6083 -4.2022 18 7 9.3492 2.7087 -5.3091 19 14 11.9134 2.4715 -4.2873 20 1 12.3450 1.1957 -3.6616 21 1 12.3474 2.4987 -5.7072 22 1 12.5274 3.6118 -3.5605 23 6 7.4662 2.6932 -1.4475 24 6 3.4345 1.3028 0.0001 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2244 2.3566 -0.0004 29 1 1.4007 4.5173 -0.0020 30 1 5.9585 1.7642 0.4344 31 1 5.8242 3.5323 0.5888 32 1 4.4744 4.1786 -1.8580 33 1 6.0293 4.9218 -1.4135 34 1 5.4668 3.3495 -3.9690 35 1 5.6307 5.1185 -3.8478 36 1 7.7487 4.0339 -4.6087 37 1 7.9512 4.8680 -3.0488 38 1 9.7969 2.7113 -6.1696 39 1 7.9290 3.5225 -0.9127 40 1 7.7693 1.7516 -0.9895 41 1 4.0432 0.4107 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595617330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = -22.784334 kcal Electronic energy + Delta-G solvation = -21324.907476 eV Core-core repulsion = 18204.019793 eV Total energy + Delta-G solvation = -3120.887682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65394 -39.94123 -38.99855 -35.73794 -33.94345 -32.52387 -32.08677 -31.52393 -28.69697 -27.18342 -26.89033 -24.48042 -23.89476 -23.21404 -22.11542 -20.35098 -18.95590 -18.37655 -17.95059 -16.95347 -16.76203 -16.61337 -16.39495 -16.02770 -15.46660 -15.23669 -14.93881 -14.67959 -14.52837 -14.37339 -14.06436 -13.76294 -13.40620 -13.00567 -12.82603 -12.73358 -12.55533 -12.48407 -12.42380 -12.10914 -11.80562 -11.70608 -11.38884 -10.94743 -10.65907 -10.48418 -10.33243 -10.05657 -9.82963 -9.15889 -8.05534 -6.19990 0.10789 0.38270 1.43499 1.45132 1.52601 2.18273 2.44486 2.69238 3.21235 3.24166 3.44674 3.71789 3.91116 4.13170 4.18300 4.24983 4.27841 4.35642 4.38417 4.43239 4.52114 4.61530 4.68474 4.72579 4.77160 4.85095 4.91287 4.96123 4.99504 5.08994 5.13329 5.19416 5.38022 5.52156 5.58207 5.65377 5.96560 6.12284 6.21137 6.25856 6.28413 6.46675 6.92386 7.09573 7.47731 8.99059 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031748 B = 0.003653 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.727273 B = 7662.152898 C = 7897.603162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.159 3.841 4 C -0.257 4.257 5 C 0.129 3.871 6 N -0.526 5.526 7 C 0.165 3.835 8 C 0.103 3.897 9 N -0.541 5.541 10 C 0.073 3.927 11 C -0.110 4.110 12 C -0.103 4.103 13 C 0.054 3.946 14 H -0.004 1.004 15 C -0.536 4.536 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 0.956 3.044 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.082 3.918 24 C -0.202 4.202 25 H 0.120 0.880 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.170 0.830 29 H 0.187 0.813 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.023 0.977 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.019 0.981 40 H 0.065 0.935 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.264 -1.156 11.882 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.105 3.895 4 C -0.278 4.278 5 C -0.028 4.028 6 N -0.240 5.240 7 C 0.029 3.971 8 C -0.025 4.025 9 N -0.266 5.266 10 C -0.054 4.054 11 C -0.148 4.148 12 C -0.141 4.141 13 C 0.035 3.965 14 H 0.014 0.986 15 C -0.575 4.575 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.781 3.219 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.046 4.046 24 C -0.223 4.223 25 H 0.139 0.861 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.188 0.812 29 H 0.204 0.796 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.962 -0.964 11.427 22.160 hybrid contribution 0.873 -0.224 -0.001 0.901 sum -18.088 -1.187 11.426 21.427 Atomic orbital electron populations 1.23456 0.75615 1.05993 1.02788 1.86061 1.24206 1.26145 1.87717 1.19441 0.92177 0.85577 0.92306 1.22477 1.02873 0.92211 1.10229 1.23080 0.89409 0.98583 0.91684 1.67545 1.08319 1.32147 1.15972 1.20823 0.95850 0.87878 0.92541 1.20985 0.88945 1.02527 0.90032 1.61934 1.12280 1.34479 1.17929 1.21977 1.00112 0.88918 0.94440 1.21593 0.96928 1.00386 0.95864 1.21460 0.93097 0.97579 1.01950 1.18572 0.93751 0.93452 0.90723 0.98560 1.21500 0.93043 1.50392 0.92550 0.92735 1.25745 1.02590 0.94807 0.95440 1.70042 1.36748 1.50975 0.97816 0.85648 0.80432 0.78861 0.76909 1.19534 1.21045 1.19677 1.22030 0.84888 0.99155 0.98480 1.21347 0.92935 0.99599 1.08448 0.86148 0.90846 0.91382 0.81226 0.79610 0.88198 0.93169 0.90094 0.95840 0.93619 0.91543 0.92302 0.95795 0.93101 0.96258 0.91670 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 113.37 1.12 1.28 16 2 O -0.33 -6.93 10.51 -90.60 -0.95 -7.88 16 3 C 0.16 3.73 6.74 22.76 0.15 3.88 16 4 C -0.26 -4.77 9.11 22.45 0.20 -4.57 16 5 C 0.13 2.71 11.17 84.60 0.95 3.66 16 6 N -0.53 -14.81 8.72 -184.12 -1.61 -16.42 16 7 C 0.16 4.90 5.69 42.49 0.24 5.14 16 8 C 0.10 3.27 5.28 85.56 0.45 3.72 16 9 N -0.54 -20.95 4.65 -900.89 -4.19 -25.13 16 10 C 0.07 2.79 5.25 86.33 0.45 3.24 16 11 C -0.11 -4.61 6.09 30.65 0.19 -4.42 16 12 C -0.10 -5.16 5.02 30.67 0.15 -5.01 16 13 C 0.05 2.84 2.26 -11.49 -0.03 2.81 16 14 H 0.00 -0.23 8.14 -2.38 -0.02 -0.24 16 15 C -0.54 -30.32 8.57 25.60 0.22 -30.10 16 16 H 0.05 2.99 7.75 -2.91 -0.02 2.96 16 17 C 0.01 0.73 5.30 84.65 0.45 1.18 16 18 N -0.92 -54.37 11.35 21.45 0.24 -54.12 16 19 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 C 0.08 3.57 4.68 86.32 0.40 3.98 16 24 C -0.20 -5.59 9.68 22.45 0.22 -5.37 16 25 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.54 7.71 -2.39 -0.02 0.52 16 27 H 0.07 0.60 7.71 -2.38 -0.02 0.58 16 28 H 0.17 1.84 6.47 -2.91 -0.02 1.82 16 29 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.10 2.84 7.88 -2.39 -0.02 2.82 16 31 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 32 H 0.08 2.91 6.03 -2.39 -0.01 2.89 16 33 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.06 3.32 6.15 -2.39 -0.01 3.30 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 2.74 8.01 -2.39 -0.02 2.72 16 41 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -67.48 328.02 1.70 -65.78 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.00 Total: 11.99 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 5.17 Total: -20.59 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -5.55 Total: -95.67 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.95 Total: -7.88 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -67.48 1.70 -65.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.994 kcal (2) G-P(sol) polarization free energy of solvation -67.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds